Bhi10M001435 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi10M001435
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr10 : 45512270 .. 45513227 (+)
Sequence length	612

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGATTTCTTCTCATTTGAAACTTGGGGACTGGACGCAGAGTAATCTCTGCAAACCCATGAACAGTTGCATTCGGAGGCTTCTTCCTTTCTTCTTTTTAGTCTTCAATGTAAAGATTTGGAATCTCACTTCCATTCTGCTCAAGAGATGATTCGGATCTAGTACCAAGAGTTTGAGCAATGGGAGAAAGTCATCGCATTGAAGGAATCGTGGTTTGATGATGCGGAGAAATCATTACAAGCGCGCTCAGAGAATGTCAAGAAAGAAGAAGTCTATTTGGAAAGACGAAGAGAGCAGCTCGAGAAACAATATGAGAAAGGGAGGACGTTCCTAAAGGAGATTGAATCTTTAAAAGCTGACATGGATTCACAGATATTACTGCTGGAAAAAGGCAGGGAAGAACTAAGGTTAAAGGAAATACAACACAAGGTATTGGCTAACGAACTTGAGTAAAAAAAAAAACATATCAATCTAGTCAGAGGTTTGATGAACAAATATAATGAAAAGGTTAATAAAGAGGTGGAATTGAATTTAGCCCAAGAGAGATTAGGAGTTTTGTCGAAAGATATTAAATTGAAAGAAGACGAGGTTGATAAAGTATGCACGAGATTCTTGGACGTTGAGATTGAATTCGCGAAAAAGGAGAAGGATTTTGATCAACTTAGCATGGAACCAAACGAGAAGGGTTTATATTTCCACCTGAACACGAAGTTGACTGGACCGAAATTGATACCATGTATAATTTTATTCGTTCTTAAAACAGTCTTCAGACCCTGCAAAACTTGTCTTGAATCTGATTTTTAGGTTCTTTTGACCAACAGTTGAAGAAAGAACAACTGGGCCTGGAAGAAAGTTTCTTGAGGTGGTCCACACTTCTTTTCAAGACAATTAGAGCAGATCTCACCCATTATTGGTCCAAAGGAAAGAGAATATGCAATGAAGCTTGCAGTTGA

mRNA sequence

ATGGAGAAGATTTCTTCTCATTTGAAACTTGGGGACTGGACGCAGATCATCGCATTGAAGGAATCGTGGTTTGATGATGCGGAGAAATCATTACAAGCGCGCTCAGAGAATGTCAAGAAAGAAGAAGTCTATTTGGAAAGACGAAGAGAGCAGCTCGAGAAACAATATGAGAAAGGGAGGACGTTCCTAAAGGAGATTGAATCTTTAAAAGCTGACATGGATTCACAGATATTACTGCTGGAAAAAGGCAGGGAAGAACTAAGGTTAAAGGAAATACAACACAAGGTTAATAAAGAGGTGGAATTGAATTTAGCCCAAGAGAGATTAGGAGTTTTGTCGAAAGATATTAAATTGAAAGAAGACGAGGTTGATAAAGTATGCACGAGATTCTTGGACGTTGAGATTGAATTCGCGAAAAAGGAGAAGGATTTTGATCAACTTAGCATGGAACCAAACGAGAAGGGTTCTTTTGACCAACAGTTGAAGAAAGAACAACTGGGCCTGGAAGAAAGTTTCTTGAGGTGGTCCACACTTCTTTTCAAGACAATTAGAGCAGATCTCACCCATTATTGGTCCAAAGGAAAGAGAATATGCAATGAAGCTTGCAGTTGA

Coding sequence (CDS)

ATGGAGAAGATTTCTTCTCATTTGAAACTTGGGGACTGGACGCAGATCATCGCATTGAAGGAATCGTGGTTTGATGATGCGGAGAAATCATTACAAGCGCGCTCAGAGAATGTCAAGAAAGAAGAAGTCTATTTGGAAAGACGAAGAGAGCAGCTCGAGAAACAATATGAGAAAGGGAGGACGTTCCTAAAGGAGATTGAATCTTTAAAAGCTGACATGGATTCACAGATATTACTGCTGGAAAAAGGCAGGGAAGAACTAAGGTTAAAGGAAATACAACACAAGGTTAATAAAGAGGTGGAATTGAATTTAGCCCAAGAGAGATTAGGAGTTTTGTCGAAAGATATTAAATTGAAAGAAGACGAGGTTGATAAAGTATGCACGAGATTCTTGGACGTTGAGATTGAATTCGCGAAAAAGGAGAAGGATTTTGATCAACTTAGCATGGAACCAAACGAGAAGGGTTCTTTTGACCAACAGTTGAAGAAAGAACAACTGGGCCTGGAAGAAAGTTTCTTGAGGTGGTCCACACTTCTTTTCAAGACAATTAGAGCAGATCTCACCCATTATTGGTCCAAAGGAAAGAGAATATGCAATGAAGCTTGCAGTTGA

Protein sequence

MEKISSHLKLGDWTQIIALKESWFDDAEKSLQARSENVKKEEVYLERRREQLEKQYEKGRTFLKEIESLKADMDSQILLLEKGREELRLKEIQHKVNKEVELNLAQERLGVLSKDIKLKEDEVDKVCTRFLDVEIEFAKKEKDFDQLSMEPNEKGSFDQQLKKEQLGLEESFLRWSTLLFKTIRADLTHYWSKGKRICNEACS

Homology

[Close]

BLAST of Bhi10M001435 vs. TrEMBL
Match: tr|A0A0A0LMH5|A0A0A0LMH5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G277090 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.7e-10
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 46  ERRREQLEKQYEKGRTFLKEIESLKADMDSQILLLEKGREELRLKEIQHKV------NKE 105
           +RR E+L K+ EK   +LKEIESLKADMDSQILLLEK REELRLKEIQHK       +KE
Sbjct: 427 KRRMEELNKKDEKVSLYLKEIESLKADMDSQILLLEKDREELRLKEIQHKAPDEELESKE 486

Query: 106 VELNLAQERLGVLSKDIKLKED 122
            E+NL +  +   ++ +KL +D
Sbjct: 487 KEINLVRALIQKCNEKVKLIDD 508

[Close]

BLAST of Bhi10M001435 vs. NCBI nr
Match: XP_004151190.1 (PREDICTED: FRIGIDA-like protein 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 4.0e-10
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 46  ERRREQLEKQYEKGRTFLKEIESLKADMDSQILLLEKGREELRLKEIQHKV------NKE 105
           +RR E+L K+ EK   +LKEIESLKADMDSQILLLEK REELRLKEIQHK       +KE
Sbjct: 430 KRRMEELNKKDEKVSLYLKEIESLKADMDSQILLLEKDREELRLKEIQHKAPDEELESKE 489

Query: 106 VELNLAQERLGVLSKDIKLKED 122
            E+NL +  +   ++ +KL +D
Sbjct: 490 KEINLVRALIQKCNEKVKLIDD 511

[Close]

BLAST of Bhi10M001435 vs. NCBI nr
Match: XP_011649315.1 (PREDICTED: FRIGIDA-like protein 5 isoform X2 [Cucumis sativus] >KGN61967.1 hypothetical protein Csa_2G277090 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 4.0e-10
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 46  ERRREQLEKQYEKGRTFLKEIESLKADMDSQILLLEKGREELRLKEIQHKV------NKE 105
           +RR E+L K+ EK   +LKEIESLKADMDSQILLLEK REELRLKEIQHK       +KE
Sbjct: 427 KRRMEELNKKDEKVSLYLKEIESLKADMDSQILLLEKDREELRLKEIQHKAPDEELESKE 486

Query: 106 VELNLAQERLGVLSKDIKLKED 122
            E+NL +  +   ++ +KL +D
Sbjct: 487 KEINLVRALIQKCNEKVKLIDD 508

[Close]

BLAST of Bhi10M001435 vs. NCBI nr
Match: XP_022932917.1 (uncharacterized protein LOC111439474 isoform X1 [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 6.4e-08
Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 24  FDDAEKSLQARSENVKKEEVYLERRREQLEKQYEKGRTFLKEIESLKADMDSQILLLEKG 83
           F+   KS++ RS+N+K EE   E+R E+L K+ EK  T+LKEIE LKAD+ SQ+ LL+KG
Sbjct: 423 FNLLRKSIEERSKNLKNEENNFEKRLEELNKKDEKVSTYLKEIEYLKADLASQVALLDKG 482

Query: 84  REELRLKEIQHK------VNKEVELNLAQERLGVLSKDIKLKEDE 123
            E  RLKEIQHK       +KE +++L ++ +   ++ ++L + E
Sbjct: 483 GEG-RLKEIQHKGLGEKLDSKEKDISLVRDLMETCNEKVRLVKKE 526

[Close]

BLAST of Bhi10M001435 vs. NCBI nr
Match: XP_022932920.1 (uncharacterized protein LOC111439474 isoform X3 [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 6.4e-08
Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 24  FDDAEKSLQARSENVKKEEVYLERRREQLEKQYEKGRTFLKEIESLKADMDSQILLLEKG 83
           F+   KS++ RS+N+K EE   E+R E+L K+ EK  T+LKEIE LKAD+ SQ+ LL+KG
Sbjct: 406 FNLLRKSIEERSKNLKNEENNFEKRLEELNKKDEKVSTYLKEIEYLKADLASQVALLDKG 465

Query: 84  REELRLKEIQHK------VNKEVELNLAQERLGVLSKDIKLKEDE 123
            E  RLKEIQHK       +KE +++L ++ +   ++ ++L + E
Sbjct: 466 GEG-RLKEIQHKGLGEKLDSKEKDISLVRDLMETCNEKVRLVKKE 509

[Close]

BLAST of Bhi10M001435 vs. NCBI nr
Match: XP_022932919.1 (uncharacterized protein LOC111439474 isoform X2 [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 6.4e-08
Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 24  FDDAEKSLQARSENVKKEEVYLERRREQLEKQYEKGRTFLKEIESLKADMDSQILLLEKG 83
           F+   KS++ RS+N+K EE   E+R E+L K+ EK  T+LKEIE LKAD+ SQ+ LL+KG
Sbjct: 423 FNLLRKSIEERSKNLKNEENNFEKRLEELNKKDEKVSTYLKEIEYLKADLASQVALLDKG 482

Query: 84  REELRLKEIQHK------VNKEVELNLAQERLGVLSKDIKLKEDE 123
            E  RLKEIQHK       +KE +++L ++ +   ++ ++L + E
Sbjct: 483 GEG-RLKEIQHKGLGEKLDSKEKDISLVRDLMETCNEKVRLVKKE 526

The following BLAST results are available for this feature:

BLAST of Bhi10M001435 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi10M001435 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi10M001435 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMH5\|A0A0A0LMH5_CUCSA	2.7e-10	57.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G277090 PE=4 SV=1	[more]

BLAST of Bhi10M001435 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151190.1	4.0e-10	57.32	PREDICTED: FRIGIDA-like protein 5 isoform X1 [Cucumis sativus]	[more]
XP_011649315.1	4.0e-10	57.32	PREDICTED: FRIGIDA-like protein 5 isoform X2 [Cucumis sativus] >KGN61967.1 hypot...	[more]
XP_022932917.1	6.4e-08	43.81	uncharacterized protein LOC111439474 isoform X1 [Cucurbita moschata]	[more]
XP_022932920.1	6.4e-08	43.81	uncharacterized protein LOC111439474 isoform X3 [Cucurbita moschata]	[more]
XP_022932919.1	6.4e-08	43.81	uncharacterized protein LOC111439474 isoform X2 [Cucurbita moschata]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi10G001435	Bhi10G001435	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi10M001435.exon1	Bhi10M001435.exon1	exon
Bhi10M001435.exon2	Bhi10M001435.exon2	exon
Bhi10M001435.exon3	Bhi10M001435.exon3	exon
Bhi10M001435.exon4	Bhi10M001435.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi10M001435	cds.Bhi10M001435	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi10M001435	Bhi10M001435-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 102..122
None	No IPR available	COILS	Coil	Coil	coord: 35..55