Bhi12G001887 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi12G001887
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Ribulose bisphosphate carboxylase large chain
Location	chr12 : 65982698 .. 65983009 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGAATTCATGAGTTGTAGGGAGGGACTTATGTCACCACAAATAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTCTAAATTGACTTATTCGATTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAACATTCCGAGTAACTCCTCAACTGGGAGTTCCACCTGAGGAAGCAGGGGCCGATGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGATTTCGAGCCTGTTTAA

mRNA sequence

ATGCGAGAATTCATGAGTTGTAGGGAGGGACTTATGTCACCACAAATAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTCTAAATTGACTTATTCGATTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAACATTCCGAGTAACTCCTCAACTGGGAGTTCCACCTGAGGAAGCAGGGGCCGATGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGATTTCGAGCCTGTTTAA

Coding sequence (CDS)

ATGCGAGAATTCATGAGTTGTAGGGAGGGACTTATGTCACCACAAATAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGATTCTAAATTGACTTATTCGATTCCTGAATATGAAACCAAAGATACTGATATCTTGGCAACATTCCGAGTAACTCCTCAACTGGGAGTTCCACCTGAGGAAGCAGGGGCCGATGTAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGATTTCGAGCCTGTTTAA

Protein sequence

MREFMSCREGLMSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEAGADVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV

Homology

[Close]

BLAST of Bhi12G001887 vs. Swiss-Prot
Match: sp|Q37192|RBL_BARSO (Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida OX=13517 GN=rbcL PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-40
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 12  MSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEAGADVAAE 71
           MSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEAGA VAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 72  SSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           SSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 90

[Close]

BLAST of Bhi12G001887 vs. Swiss-Prot
Match: sp|P48693|RBL_CICIN (Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus OX=13427 GN=rbcL PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-40
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 12  MSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEAGADVAAE 71
           MSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEAGA VAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 72  SSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           SSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 90

[Close]

BLAST of Bhi12G001887 vs. Swiss-Prot
Match: sp|P27064|RBL_CUCSA (Ribulose bisphosphate carboxylase large chain OS=Cucumis sativus OX=3659 GN=rbcL PE=1 SV=5)

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-40
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 12  MSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEAGADVAAE 71
           MSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEAGA VAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 72  SSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           SSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 90

[Close]

BLAST of Bhi12G001887 vs. Swiss-Prot
Match: sp|P19161|RBL_FLABI (Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis OX=4224 GN=rbcL PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-40
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 12  MSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEAGADVAAE 71
           MSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEAGA VAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 72  SSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           SSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 90

[Close]

BLAST of Bhi12G001887 vs. Swiss-Prot
Match: sp|P19162|RBL_FLAPR (Ribulose bisphosphate carboxylase large chain OS=Flaveria pringlei OX=4226 GN=rbcL PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-40
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 12  MSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEAGADVAAE 71
           MSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEAGA VAAE
Sbjct: 1   MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 72  SSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           SSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 90

[Close]

BLAST of Bhi12G001887 vs. TAIR10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases)

HSP 1 Score: 161.4 bits (407), Expect = 3.0e-40
Identity = 81/92 (88.04%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 12  MSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEAGADVAAE 71
           MSPQ ETKASVGFKAGVK+ KLTY  PEYETKDTDILA FRVTPQ GVPPEEAGA VAAE
Sbjct: 1   MSPQTETKASVGFKAGVKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60

Query: 72  SSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           SSTGTWTTVWTDGLTSLDRYKGRCY I  EPV
Sbjct: 61  SSTGTWTTVWTDGLTSLDRYKGRCYHI--EPV 90

[Close]

BLAST of Bhi12G001887 vs. TrEMBL
Match: tr|A0A1P8LDI3|A0A1P8LDI3_CITLA (Ribulose bisphosphate carboxylase large chain OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rbcL PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-42
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 5   MSCREGLMSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEA 64
           MSCREGLMSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 65  GADVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 97

[Close]

BLAST of Bhi12G001887 vs. TrEMBL
Match: tr|A0A1P8LE76|A0A1P8LE76_9ROSI (Ribulose bisphosphate carboxylase large chain OS=Citrullus mucosospermus OX=519315 GN=rbcL PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-42
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 5   MSCREGLMSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEA 64
           MSCREGLMSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 65  GADVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 97

[Close]

BLAST of Bhi12G001887 vs. TrEMBL
Match: tr|A0A2H4T280|A0A2H4T280_CUCMO (Ribulose bisphosphate carboxylase large chain OS=Cucurbita moschata OX=3662 GN=rbcL PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-42
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 5   MSCREGLMSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEA 64
           MSCREGLMSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 65  GADVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 97

[Close]

BLAST of Bhi12G001887 vs. TrEMBL
Match: tr|A0A2H4T203|A0A2H4T203_CUCMA (Ribulose bisphosphate carboxylase large chain OS=Cucurbita maxima OX=3661 GN=rbcL PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-42
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 5   MSCREGLMSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEA 64
           MSCREGLMSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 65  GADVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 97

[Close]

BLAST of Bhi12G001887 vs. TrEMBL
Match: tr|A0A2I6C082|A0A2I6C082_LAGSI (Ribulose bisphosphate carboxylase large chain OS=Lagenaria siceraria OX=3668 GN=rbcL PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-42
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 5   MSCREGLMSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEA 64
           MSCREGLMSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 65  GADVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 97

[Close]

BLAST of Bhi12G001887 vs. NCBI nr
Match: AXR94555.1 (ribulose bisophosphate carboxylase (chloroplast) [Hodgsonia macrocarpa] >AXR94641.1 ribulose bisophosphate carboxylase (chloroplast) [Hodgsonia macrocarpa] >AXR94725.1 ribulose bisophosphate carboxylase (chloroplast) [Hodgsonia macrocarpa] >AXR94810.1 ribulose bisophosphate carboxylase (chloroplast) [Hodgsonia macrocarpa])

HSP 1 Score: 180.6 bits (457), Expect = 2.6e-42
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 5   MSCREGLMSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEA 64
           MSCREGLMSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 65  GADVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 97

[Close]

BLAST of Bhi12G001887 vs. NCBI nr
Match: AAZ94659.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 2.6e-42
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 5   MSCREGLMSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEA 64
           MSCREGLMSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 65  GADVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 97

[Close]

BLAST of Bhi12G001887 vs. NCBI nr
Match: YP_009325997.1 (ribulose-1 (chloroplast) [Citrullus lanatus] >YP_009348039.1 ribulose-1 (plastid) [Citrullus mucosospermus] >YP_009420802.1 ribulose-1 (chloroplast) [Citrullus colocynthis] >YP_009431565.1 ribulose-1 (chloroplast) [Citrullus amarus] >YP_009431650.1 ribulose-1 (chloroplast) [Citrullus rehmii] >APD52488.1 ribulose-1 (chloroplast) [Citrullus lanatus] >APW82469.1 ribulose-1 (plastid) [Citrullus lanatus subsp. vulgaris] >APW82554.1 ribulose-1 (plastid) [Citrullus lanatus subsp. vulgaris] >APW82639.1 ribulose-1 (plastid) [Citrullus lanatus subsp. vulgaris] >APW82724.1 ribulose-1 (plastid) [Citrullus mucosospermus] >APW82809.1 ribulose-1 (plastid) [Citrullus mucosospermus] >APW82894.1 ribulose-1 (plastid) [Citrullus lanatus subsp. vulgaris] >APW82979.1 ribulose-1 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83064.1 ribulose-1 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83149.1 ribulose-1 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83234.1 ribulose-1 (plastid) [Citrullus lanatus subsp. vulgaris] >APW83319.1 ribulose-1 (plastid) [Citrullus mucosospermus] >ASP44494.1 ribulose-1 (chloroplast) [Citrullus colocynthis] >ASY96192.1 ribulose-1 (chloroplast) [Citrullus amarus] >ASY96280.1 ribulose-1 (chloroplast) [Citrullus rehmii])

HSP 1 Score: 180.6 bits (457), Expect = 2.6e-42
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 5   MSCREGLMSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEA 64
           MSCREGLMSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 65  GADVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 97

[Close]

BLAST of Bhi12G001887 vs. NCBI nr
Match: YP_009447458.1 (ribulose-1 (chloroplast) [Cucurbita maxima] >YP_009505088.1 ribulose-1 (chloroplast) [Cucurbita pepo] >ATY69901.1 ribulose-1 (chloroplast) [Cucurbita maxima] >AWX90378.1 ribulose-1 (chloroplast) [Cucurbita pepo])

HSP 1 Score: 180.6 bits (457), Expect = 2.6e-42
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 5   MSCREGLMSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEA 64
           MSCREGLMSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 65  GADVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 97

[Close]

BLAST of Bhi12G001887 vs. NCBI nr
Match: YP_009447543.1 (ribulose-1 (chloroplast) [Cucurbita moschata] >ATY69984.1 ribulose-1 (chloroplast) [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 2.6e-42
Identity = 90/99 (90.91%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 5   MSCREGLMSPQIETKASVGFKAGVKDSKLTYSIPEYETKDTDILATFRVTPQLGVPPEEA 64
           MSCREGLMSPQ ETKASVGFKAGVKD KLTY  PEYETKDTDILA FRVTPQ GVPPEEA
Sbjct: 1   MSCREGLMSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEA 60

Query: 65  GADVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIDFEPV 104
           GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI  EPV
Sbjct: 61  GAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGI--EPV 97

The following BLAST results are available for this feature:

BLAST of Bhi12G001887 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q37192\|RBL_BARSO	2.2e-40	90.22	Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida OX=13517 GN...	[more]
sp\|P48693\|RBL_CICIN	2.2e-40	90.22	Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus OX=13427 GN=r...	[more]
sp\|P27064\|RBL_CUCSA	2.2e-40	90.22	Ribulose bisphosphate carboxylase large chain OS=Cucumis sativus OX=3659 GN=rbcL...	[more]
sp\|P19161\|RBL_FLABI	2.2e-40	90.22	Ribulose bisphosphate carboxylase large chain OS=Flaveria bidentis OX=4224 GN=rb...	[more]
sp\|P19162\|RBL_FLAPR	2.2e-40	90.22	Ribulose bisphosphate carboxylase large chain OS=Flaveria pringlei OX=4226 GN=rb...	[more]

BLAST of Bhi12G001887 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00490.1	3.0e-40	88.04	ribulose-bisphosphate carboxylases	[more]

BLAST of Bhi12G001887 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1P8LDI3\|A0A1P8LDI3_CITLA	1.7e-42	90.91	Ribulose bisphosphate carboxylase large chain OS=Citrullus lanatus subsp. vulgar...	[more]
tr\|A0A1P8LE76\|A0A1P8LE76_9ROSI	1.7e-42	90.91	Ribulose bisphosphate carboxylase large chain OS=Citrullus mucosospermus OX=5193...	[more]
tr\|A0A2H4T280\|A0A2H4T280_CUCMO	1.7e-42	90.91	Ribulose bisphosphate carboxylase large chain OS=Cucurbita moschata OX=3662 GN=r...	[more]
tr\|A0A2H4T203\|A0A2H4T203_CUCMA	1.7e-42	90.91	Ribulose bisphosphate carboxylase large chain OS=Cucurbita maxima OX=3661 GN=rbc...	[more]
tr\|A0A2I6C082\|A0A2I6C082_LAGSI	1.7e-42	90.91	Ribulose bisphosphate carboxylase large chain OS=Lagenaria siceraria OX=3668 GN=...	[more]

BLAST of Bhi12G001887 vs. NCBI nr


Match Name	E-value	Identity	Description
AXR94555.1	2.6e-42	90.91	ribulose bisophosphate carboxylase (chloroplast) [Hodgsonia macrocarpa] >AXR9464...	[more]
AAZ94659.1	2.6e-42	90.91	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Cuc...	[more]
YP_009325997.1	2.6e-42	90.91	ribulose-1 (chloroplast) [Citrullus lanatus] >YP_009348039.1 ribulose-1 (plastid...	[more]
YP_009447458.1	2.6e-42	90.91	ribulose-1 (chloroplast) [Cucurbita maxima] >YP_009505088.1 ribulose-1 (chloropl...	[more]
YP_009447543.1	2.6e-42	90.91	ribulose-1 (chloroplast) [Cucurbita moschata] >ATY69984.1 ribulose-1 (chloroplas...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016984	ribulose-bisphosphate carboxylase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015977	carbon fixation

Vocabulary: **INTERPRO**
Term	Definition
IPR036422	RuBisCO_lsu_N_sf
IPR017443	RuBisCO_lsu_fd_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0015977	carbon fixation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031361	integral component of thylakoid membrane
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001887	Bhi12M001887	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	PFAM	PF02788	RuBisCO_large_N	coord: 35..99 e-value: 1.9E-20 score: 73.1
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	GENE3D	G3DSA:3.30.70.150		coord: 33..103 e-value: 3.2E-25 score: 90.4
IPR036422	RuBisCO large subunit, N-terminal domain superfamily	SUPERFAMILY	SSF54966	RuBisCO, large subunit, small (N-terminal) domain	coord: 19..100
None	No IPR available	PANTHER	PTHR42704	FAMILY NOT NAMED	coord: 12..99
None	No IPR available	PANTHER	PTHR42704:SF2	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN	coord: 12..99

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi12G001887	Cucumber (Gy14) v1	cgywgoB205
Bhi12G001887	Cucumber (Gy14) v2	cgybwgoB522
Bhi12G001887	Cucurbita maxima (Rimu)	cmawgoB0457
Bhi12G001887	Cucurbita maxima (Rimu)	cmawgoB1099
Bhi12G001887	Cucurbita moschata (Rifu)	cmowgoB0455
Bhi12G001887	Cucurbita moschata (Rifu)	cmowgoB1093
Bhi12G001887	Cucurbita pepo (Zucchini)	cpewgoB0174
Bhi12G001887	Cucurbita pepo (Zucchini)	cpewgoB0381
Bhi12G001887	Wild cucumber (PI 183967)	cpiwgoB549
Bhi12G001887	Cucumber (Chinese Long) v3	cucwgoB562
Bhi12G001887	Cucumber (Chinese Long) v2	cuwgoB545
Bhi12G001887	Bottle gourd (USVL1VR-Ls)	lsiwgoB011
Bhi12G001887	Melon (DHL92) v3.6.1	medwgoB094
Bhi12G001887	Melon (DHL92) v3.5.1	mewgoB093
Bhi12G001887	Watermelon (Charleston Gray)	wcgwgoB499
Bhi12G001887	Watermelon (97103) v2	wgowmbB094
Bhi12G001887	Watermelon (97103) v1	wgowmB093
Bhi12G001887	Silver-seed gourd	carwgoB0667
Bhi12G001887	Silver-seed gourd	carwgoB0713