Bhi12G001874 (gene) Wax gourd

NameBhi12G001874
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A2
Locationchr12 : 65550692 .. 65551135 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGGTGGAGTATTAGACTATTTCTATTACTCGATATCTGAGAATTCTTAATTAACTAGTTGTAAATAGACCCAAACTGTGGAACAAATCTATGCTATAGAGTATATAACTTCGATCATAGGGACCAATTTCTAGTCGCATAGCTTCATAATAATTTTGTAGAGCTCATTTGGGGCAATTAGCAATAATTTTTCTACAGACTTTCGGAAATCTGTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTAAAAGACCCTTTACATGTAAGACCGATTGCTCATGCAATTTGGGATCCTCATTTTAGTCAATCGGCCGTCGAAGCTTTTACTCAAGGTGGTGCTCTTGGCCCAGTGAATGTCACAGGGTGGGTCGGTAGGCTGGGCGGACGGGGACCATTGAAGAAGTGCCTTGACGTGCCGCATCATAGGAATTAA

mRNA sequence

ATGACAAAGACTTTCGGAAATCTGTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTAAAAGACCCTTTACATGTAAGACCGATTGCTCATGCAATTTGGGATCCTCATTTTAGTCAATCGGCCGTCGAAGCTTTTACTCAAGGTGGTGCTCTTGGCCCAGTGAATGTCACAGGGTGGGTCGGTAGGCTGGGCGGACGGGGACCATTGAAGAAGTGCCTTGACGTGCCGCATCATAGGAATTAA

Coding sequence (CDS)

ATGACAAAGACTTTCGGAAATCTGTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTAAAAGACCCTTTACATGTAAGACCGATTGCTCATGCAATTTGGGATCCTCATTTTAGTCAATCGGCCGTCGAAGCTTTTACTCAAGGTGGTGCTCTTGGCCCAGTGAATGTCACAGGGTGGGTCGGTAGGCTGGGCGGACGGGGACCATTGAAGAAGTGCCTTGACGTGCCGCATCATAGGAATTAA

Protein sequence

MTKTFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNVTGWVGRLGGRGPLKKCLDVPHHRN
BLAST of Bhi12G001874 vs. Swiss-Prot
Match: sp|Q4VZN4|PSAB_CUCSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psaB PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-25
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHF Q AVEAFT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. Swiss-Prot
Match: sp|Q49KZ9|PSAB_EUCGG (Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=psaB PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-25
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHF Q AVEAFT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. Swiss-Prot
Match: sp|P58385|PSAB_LOTJA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lotus japonicus OX=34305 GN=psaB PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-25
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHF Q AVEAFT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. Swiss-Prot
Match: sp|Q09X18|PSAB_MORIN (Photosystem I P700 chlorophyll a apoprotein A2 OS=Morus indica OX=248361 GN=psaB PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-25
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHF Q AVEAFT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. Swiss-Prot
Match: sp|Q9MTN7|PSAB_OENEH (Photosystem I P700 chlorophyll a apoprotein A2 OS=Oenothera elata subsp. hookeri OX=85636 GN=psaB PE=3 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-25
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHF Q AVEAFT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. TAIR10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 114.4 bits (285), Expect = 3.3e-26
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFE WV+DPLHVRPIAHAIWDPHF Q AVEAFT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. TAIR10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 41.6 bits (96), Expect = 2.8e-04
Identity = 19/49 (38.78%), Postives = 24/49 (48.98%), Query Frame = 0

Query: 6   GNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALG 55
           G  FH A   N+EAW+ DP H+ P A  +W P   Q  +     GG  G
Sbjct: 87  GMYFHGARFSNYEAWLSDPTHIGPSAQVVW-PIVGQEILNGDVGGGFRG 134

BLAST of Bhi12G001874 vs. TrEMBL
Match: tr|A0A1J7IYU3|A0A1J7IYU3_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_07600 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.0e-24
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           TFGNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHF Q AVEAFT+GGALGPVN+
Sbjct: 61  TFGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. TrEMBL
Match: tr|A0A2G2XVJ3|A0A2G2XVJ3_CAPAN (Photosystem I chlorophyll a apoprotein A2 OS=Capsicum annuum OX=4072 GN=T459_34644 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           TFGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHF Q AVEAFT+GGALGPVN+
Sbjct: 61  TFGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. TrEMBL
Match: tr|A0A2D1GRV1|A0A2D1GRV1_9MAGN (Photosystem I P700 chlorophyll a apoprotein A2 OS=Taxillus chinensis OX=227909 GN=psaB PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHF QSAVE FT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQSAVEVFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. TrEMBL
Match: tr|A0A2D1GS27|A0A2D1GS27_9MAGN (Photosystem I P700 chlorophyll a apoprotein A2 OS=Taxillus sutchuenensis OX=227910 GN=psaB PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHF QSAVE FT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQSAVEVFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. TrEMBL
Match: tr|K4KAN7|K4KAN7_IRVMA (PsaB (Fragment) OS=Irvingia malayana OX=85215 GN=psaB PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHF QSAVEAFT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQSAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. NCBI nr
Match: OIW18016.1 (hypothetical protein TanjilG_07600 [Lupinus angustifolius])

HSP 1 Score: 119.0 bits (297), Expect = 7.5e-24
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           TFGNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHF Q AVEAFT+GGALGPVN+
Sbjct: 61  TFGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. NCBI nr
Match: AFU95083.1 (PsaB, partial (chloroplast) [Irvingia malayana])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHF QSAVEAFT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQSAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. NCBI nr
Match: PHT61492.1 (Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           TFGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHF Q AVEAFT+GGALGPVN+
Sbjct: 61  TFGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. NCBI nr
Match: YP_009442330.1 (photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Taxillus chinensis] >ATN95703.1 photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Taxillus chinensis])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHF QSAVE FT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQSAVEVFTRGGALGPVNI 115

BLAST of Bhi12G001874 vs. NCBI nr
Match: YP_009442396.1 (photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Taxillus sutchuenensis] >ATN95774.1 photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Taxillus sutchuenensis])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 4   TFGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFSQSAVEAFTQGGALGPVNV 59
           T GNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHF QSAVE FT+GGALGPVN+
Sbjct: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQSAVEVFTRGGALGPVNI 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|Q4VZN4|PSAB_CUCSA2.1e-2589.09Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psa... [more]
sp|Q49KZ9|PSAB_EUCGG2.1e-2589.09Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. glo... [more]
sp|P58385|PSAB_LOTJA2.1e-2589.09Photosystem I P700 chlorophyll a apoprotein A2 OS=Lotus japonicus OX=34305 GN=ps... [more]
sp|Q09X18|PSAB_MORIN2.1e-2589.09Photosystem I P700 chlorophyll a apoprotein A2 OS=Morus indica OX=248361 GN=psaB... [more]
sp|Q9MTN7|PSAB_OENEH2.1e-2589.09Photosystem I P700 chlorophyll a apoprotein A2 OS=Oenothera elata subsp. hookeri... [more]
Match NameE-valueIdentityDescription
ATCG00340.13.3e-2687.27Photosystem I, PsaA/PsaB protein[more]
ATCG00350.12.8e-0438.78Photosystem I, PsaA/PsaB protein[more]
Match NameE-valueIdentityDescription
tr|A0A1J7IYU3|A0A1J7IYU3_LUPAN5.0e-2490.91Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_07600 PE=4 S... [more]
tr|A0A2G2XVJ3|A0A2G2XVJ3_CAPAN1.1e-2389.09Photosystem I chlorophyll a apoprotein A2 OS=Capsicum annuum OX=4072 GN=T459_346... [more]
tr|A0A2D1GRV1|A0A2D1GRV1_9MAGN1.1e-2390.91Photosystem I P700 chlorophyll a apoprotein A2 OS=Taxillus chinensis OX=227909 G... [more]
tr|A0A2D1GS27|A0A2D1GS27_9MAGN1.1e-2390.91Photosystem I P700 chlorophyll a apoprotein A2 OS=Taxillus sutchuenensis OX=2279... [more]
tr|K4KAN7|K4KAN7_IRVMA1.1e-2390.91PsaB (Fragment) OS=Irvingia malayana OX=85215 GN=psaB PE=3 SV=1[more]
Match NameE-valueIdentityDescription
OIW18016.17.5e-2490.91hypothetical protein TanjilG_07600 [Lupinus angustifolius][more]
AFU95083.11.7e-2390.91PsaB, partial (chloroplast) [Irvingia malayana][more]
PHT61492.11.7e-2389.09Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum][more]
YP_009442330.11.7e-2390.91photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Taxillus chinensis... [more]
YP_009442396.11.7e-2390.91photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Taxillus sutchuene... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0009522photosystem I
GO:0009579thylakoid
Vocabulary: INTERPRO
TermDefinition
IPR001280PSI_PsaA/B
IPR036408PSI_PsaA/B_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0015979 photosynthesis
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0000287 magnesium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M001874Bhi12M001874mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036408Photosystem I PsaA/PsaB superfamilyGENE3DG3DSA:1.20.1130.10coord: 1..65
e-value: 1.9E-20
score: 74.6
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILYSSF81558Photosystem I subunits PsaA/PsaBcoord: 5..58
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 6..59
e-value: 4.0E-17
score: 61.6
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 4..58
NoneNo IPR availablePANTHERPTHR30128:SF4PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2coord: 4..58

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None