Bhi06M001319 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06M001319
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Cell wall-associated hydrolase
Location	chr6 : 44557976 .. 44558343 (+)
Sequence length	303

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCGAACTGTCTCACGACGTTCTGAACCCAGTTCACGTACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGCCTCAGGTGGCGAAGAGCCGACATTGAGGTGCCAAACCTTCCCATCGATGTGAGCTCTTGGGGAAGATCAGCTTGTTATCCCTAGAGTAACTTTTATCCGTAGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTGCTCGACGGGTTGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTTGAGGGCCAATCTCTGTCTGGCCTGAGGAAACCTTTGCACACCTCCGTTACCTTTTGGGAGGCCTACGCCCTATAG

mRNA sequence

ATGAACCGAACTGTCTCACGACGTTCTGAACCCAGTTCACGTACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGCCTCAGCTTGTTATCCCTAGAGTAACTTTTATCCGTAGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTGCTCGACGGGTTGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTTGAGGGCCAATCTCTGTCTGGCCTGAGGAAACCTTTGCACACCTCCGTTACCTTTTGGGAGGCCTACGCCCTATAG

Coding sequence (CDS)

ATGAACCGAACTGTCTCACGACGTTCTGAACCCAGTTCACGTACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGCCTCAGCTTGTTATCCCTAGAGTAACTTTTATCCGTAGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTGCTCGACGGGTTGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTTGAGGGCCAATCTCTGTCTGGCCTGAGGAAACCTTTGCACACCTCCGTTACCTTTTGGGAGGCCTACGCCCTATAG

Protein sequence

MNRTVSRRSEPSSRTALMGEQPNPWNILQPQLVIPRVTFIRRATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSLSGLRKPLHTSVTFWEAYAL

Homology

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BLAST of Bhi06M001319 vs. TrEMBL
Match: tr|A0A2N9GA72|A0A2N9GA72_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23936 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 42  RATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSLSGLRKPLHTSVTFWEAY 99
           RATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQS SG RKPLH SVTFWEAY
Sbjct: 122 RATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPSGPRKPLHASVTFWEAY 178

[Close]

BLAST of Bhi06M001319 vs. TrEMBL
Match: tr|W9RPF7|W9RPF7_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018827 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 42  RATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSLSGLRKPLHTSVTFWEAYA 100
           RATALP GTVGSLRPTFVPARRVGLAVKLPSAFALEGQS SG RKPLH SVTFWEAYA
Sbjct: 80  RATALPPGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPSGPRKPLHASVTFWEAYA 137

[Close]

BLAST of Bhi06M001319 vs. TrEMBL
Match: tr|A0A2N9IVY3|A0A2N9IVY3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57409 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18
Identity = 50/53 (94.34%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 47  PLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSLSGLRKPLHTSVTFWEAYA 100
           PLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQS SG RKPLH SVTFWEAYA
Sbjct: 27  PLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPSGPRKPLHASVTFWEAYA 79

[Close]

BLAST of Bhi06M001319 vs. TrEMBL
Match: tr|W9SEP0|W9SEP0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000614 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-18
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 42  RATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSLSGLRKPLHTSVTFWEAYA 100
           RATALP GTVGSLR TFVPAR VGLA+KLPSAFALEGQS SG RKPLH SVTFWEAYA
Sbjct: 124 RATALPPGTVGSLRLTFVPARWVGLAIKLPSAFALEGQSPSGPRKPLHASVTFWEAYA 181

[Close]

BLAST of Bhi06M001319 vs. TrEMBL
Match: tr|A0A2P5SF32|A0A2P5SF32_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD05319 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-17
Identity = 54/70 (77.14%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 13  SRTALMGEQPNPWNILQPQLVIPRVTFIRRATALPLGTVGSLRPTFVPARRVGLAVKLPS 72
           SR ALMG+QPNPWNILQPQ+V  R     RATALPLGT+GSLR TFVP R VGLAVKLPS
Sbjct: 120 SRMALMGKQPNPWNILQPQVVKSR----HRATALPLGTIGSLRLTFVPVRPVGLAVKLPS 179

Query: 73  AFALEGQSLS 83
            FALEGQS S
Sbjct: 180 -FALEGQSPS 184

[Close]

BLAST of Bhi06M001319 vs. NCBI nr
Match: KZV45021.1 (Metallocarboxypeptidase inhibitor [Dorcoceras hygrometricum])

HSP 1 Score: 109.8 bits (273), Expect = 5.5e-21
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 42  RATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSLSGLRKPLHTSVTFWEAYA 100
           RATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQS SG RKPLH SVTFWEAYA
Sbjct: 122 RATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPSGPRKPLHASVTFWEAYA 179

[Close]

BLAST of Bhi06M001319 vs. NCBI nr
Match: EXC01915.1 (hypothetical protein L484_018827 [Morus notabilis])

HSP 1 Score: 107.1 bits (266), Expect = 3.6e-20
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 42  RATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSLSGLRKPLHTSVTFWEAYA 100
           RATALP GTVGSLRPTFVPARRVGLAVKLPSAFALEGQS SG RKPLH SVTFWEAYA
Sbjct: 80  RATALPPGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPSGPRKPLHASVTFWEAYA 137

[Close]

BLAST of Bhi06M001319 vs. NCBI nr
Match: EXC50692.1 (hypothetical protein L484_000614 [Morus notabilis])

HSP 1 Score: 99.8 bits (247), Expect = 5.7e-18
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 42  RATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSLSGLRKPLHTSVTFWEAYA 100
           RATALP GTVGSLR TFVPAR VGLA+KLPSAFALEGQS SG RKPLH SVTFWEAYA
Sbjct: 124 RATALPPGTVGSLRLTFVPARWVGLAIKLPSAFALEGQSPSGPRKPLHASVTFWEAYA 181

[Close]

BLAST of Bhi06M001319 vs. NCBI nr
Match: PPD97659.1 (hypothetical protein GOBAR_DD05319 [Gossypium barbadense])

HSP 1 Score: 96.3 bits (238), Expect = 6.3e-17
Identity = 54/70 (77.14%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 13  SRTALMGEQPNPWNILQPQLVIPRVTFIRRATALPLGTVGSLRPTFVPARRVGLAVKLPS 72
           SR ALMG+QPNPWNILQPQ+V  R     RATALPLGT+GSLR TFVP R VGLAVKLPS
Sbjct: 120 SRMALMGKQPNPWNILQPQVVKSR----HRATALPLGTIGSLRLTFVPVRPVGLAVKLPS 179

Query: 73  AFALEGQSLS 83
            FALEGQS S
Sbjct: 180 -FALEGQSPS 184

[Close]

BLAST of Bhi06M001319 vs. NCBI nr
Match: KHN03664.1 (hypothetical protein glysoja_035407 [Glycine soja])

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 45  ALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSLSGLRKPLHTSVTFWEAYA 100
           ALPLG V SLRPTFV  RRVGLA+KLPSAFALEGQ+ SGLRKPLH SVTF EAYA
Sbjct: 2   ALPLGIVRSLRPTFVHNRRVGLAIKLPSAFALEGQTPSGLRKPLHASVTFREAYA 56

The following BLAST results are available for this feature:

BLAST of Bhi06M001319 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi06M001319 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi06M001319 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9GA72\|A0A2N9GA72_FAGSY	1.1e-20	94.74	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23936 PE=4 SV=1	[more]
tr\|W9RPF7\|W9RPF7_9ROSA	2.4e-20	93.10	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018827 PE=4 SV=1	[more]
tr\|A0A2N9IVY3\|A0A2N9IVY3_FAGSY	1.3e-18	94.34	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57409 PE=4 SV=1	[more]
tr\|W9SEP0\|W9SEP0_9ROSA	3.8e-18	87.93	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000614 PE=4 SV=1	[more]
tr\|A0A2P5SF32\|A0A2P5SF32_GOSBA	4.2e-17	77.14	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD05319 PE=4 SV...	[more]

BLAST of Bhi06M001319 vs. NCBI nr


Match Name	E-value	Identity	Description
KZV45021.1	5.5e-21	94.83	Metallocarboxypeptidase inhibitor [Dorcoceras hygrometricum]	[more]
EXC01915.1	3.6e-20	93.10	hypothetical protein L484_018827 [Morus notabilis]	[more]
EXC50692.1	5.7e-18	87.93	hypothetical protein L484_000614 [Morus notabilis]	[more]
PPD97659.1	6.3e-17	77.14	hypothetical protein GOBAR_DD05319 [Gossypium barbadense]	[more]
KHN03664.1	1.0e-14	83.64	hypothetical protein glysoja_035407 [Glycine soja]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016787	hydrolase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi06G001319	Bhi06G001319	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi06M001319.exon1	Bhi06M001319.exon1	exon
Bhi06M001319.exon2	Bhi06M001319.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi06M001319	cds.Bhi06M001319	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi06M001319	Bhi06M001319-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22