Cla97C03G062370.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C03G062370.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr03 : 23196858 .. 23197513 (-)
Sequence length228
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAAGAAAACCCTGTTCTGTTTAGTTTTCTTACTAGTTCTAAAAGTGATCGTAAAGTTCCCCGCTATCGAGTGTGATAAAGCCAAGTTTTCAAGCAGCCAAAAGCTAGTTTGATTGGATGTGCCAGTAGGGCTTCCTAACGTTCTATAATCAACTTAAGCTATCACGAAAAGGCTAAAGATAAAAAAAAGCGAATCATCTTTCTTTCTATACGATACGCAATTTCGAAATCAGGGAAAAATTCATCTTGATAGCACAGGAAAGAGAGAACATCTTCCTTCTGTGACATTTACCCCGAAAAAAAAGCCTATTCTATACCAGCTTCTTCTATAGATGAGATAACTGGAGCAGATTCAATAGCAAGGGATATTCACCCAGCAGCTCAAGCAGCAGATTCTATTCTGGGCATGAATGTGCAACCTAAAGACTCGCAAGTTTTTTTCCTATACTTCCCACCGTGGCAGCCTCTAACTCTAAAGCGTTAGTATATATTATATAAAGTGCGCTTTTGGCCTTAGCAGCAAGTACCTTCTACTCCTTGGCATTCACGGATTGGTTATGTAGCAATGCTTCTTGTAAGGATCTTCAGTTTGGTTTTGATTGCCAGTGGCGTACGACCTTCTGTGCGATAGCATGGAAGATTTTGGTTTAG

mRNA sequence

ATGGGAAAAGAAAACCCTGTTCTGTTTAGTTTTCTTACTAGTTCTAAAAGTGATCGTAAAGTTCCCCGCTATCGAGTTGCGCTTTTGGCCTTAGCAGCAAGTACCTTCTACTCCTTGGCATTCACGGATTGGTTATGTAGCAATGCTTCTTGTAAGGATCTTCAGTTTGGTTTTGATTGCCAGTGGCGTACGACCTTCTGTGCGATAGCATGGAAGATTTTGGTTTAG

Coding sequence (CDS)

ATGGGAAAAGAAAACCCTGTTCTGTTTAGTTTTCTTACTAGTTCTAAAAGTGATCGTAAAGTTCCCCGCTATCGAGTTGCGCTTTTGGCCTTAGCAGCAAGTACCTTCTACTCCTTGGCATTCACGGATTGGTTATGTAGCAATGCTTCTTGTAAGGATCTTCAGTTTGGTTTTGATTGCCAGTGGCGTACGACCTTCTGTGCGATAGCATGGAAGATTTTGGTTTAG

Protein sequence

MGKENPVLFSFLTSSKSDRKVPRYRVALLALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV
Homology
[Close]
BLAST of Cla97C03G062370.1 vs. NCBI nr
Match: KJB09803.1 (hypothetical protein B456_001G167900 [Gossypium raimondii])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 29 LALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SLAFTDWLCSNA CKDL+FGFDCQWRTTF AIAWKILV
Sbjct: 19 MSIKVPSTHSLAFTDWLCSNAFCKDLKFGFDCQWRTTFYAIAWKILV 65

[Close]
BLAST of Cla97C03G062370.1 vs. TrEMBL
Match: tr|A0A0D2NAD0|A0A0D2NAD0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G167900 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 29 LALAASTFYSLAFTDWLCSNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SLAFTDWLCSNA CKDL+FGFDCQWRTTF AIAWKILV
Sbjct: 19 MSIKVPSTHSLAFTDWLCSNAFCKDLKFGFDCQWRTTFYAIAWKILV 65

The following BLAST results are available for this feature:
BLAST of Cla97C03G062370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KJB09803.11.6e-1274.47hypothetical protein B456_001G167900 [Gossypium raimondii][more]
BLAST of Cla97C03G062370.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0D2NAD0|A0A0D2NAD0_GOSRA1.0e-1274.47Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G167900 PE=4 ... [more]
BLAST of Cla97C03G062370.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C03G062370.1 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C03G062370Cla97C03G062370gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C03G062370.1.CDS.2Cla97C03G062370.1.CDS.2CDS
Cla97C03G062370.1.CDS.1Cla97C03G062370.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C03G062370.1.exon.2Cla97C03G062370.1.exon.2exon
Cla97C03G062370.1.exon.1Cla97C03G062370.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C03G062370.1Cla97C03G062370.1-proteinpolypeptide