Carg15119-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCACCTCGCTATGAAGTGGAATTGAAAATACAGTCCGCTAGAGATCTCAAGAACGTCAACTGGCGCAACGGTGCCCTGAAGCCGTACGCCGTCGTTTGGATTGATCCAAGTAACAAATTTTCGACGAAGGTCGACGCCGGAGGTGACACGTCACCTTACTGGAACGAAACGCTTGACATTTCTTTCCCGTCGCCGATCGAAGATGCTACGTTGAACATCAACATCGTTCATGTCGCCAACGGCGAGAATGATGTCAAACCGCTGATCGGCGCCGCCAGACTCCGTCTCTCTGACGTCGTCGACAGTGTCGGCTTCGGCGAACGCACTGATCGAACTCTCCAATTGAAACGGCCCTCCGGCAGGCCTCAAGGGAAGGTCGAAGTTAAAGTAACAGTCCGAGAATCACGTTACCGATCATCCGATTCCTATTACGCGCCGCCGTATGGGGTCCCACCGCCTTCCTATGCCACTTCGTACTCTGCTCCTCGCGATCCATACTATGCAACGGCTCCTCCGTCACGATACTCTTCCGCCGAGTACAATGTACCGGCCCCAGACCCGGTCCCGGCACCAGCTGCGGCTCCGTACGGTCAGGCGAGTTACGGGCAGCCGGCGTATAGCAGTCAAGCGAGTTACGGGCAGCCGGCGTATAGCAGTCAAGCGAGTTACGGGCAGCCGGCGTATAGCAGTCAGGCGAGTTACGGGGAGTCGGCGGCGTATAACAGTCAGACGAGTTACGGGCAGCCGGCGGAAAAGAAGAACAAGTTCGGGATGGGGACTGGATTGGCTGTGGGTGCGGTGGCGGGAGTTTTGGGTGGATTGGCGTTGGGAGAGGGCATCGAACATATGGAGAACAAGAGGGACGAAGAAGCGGCAGAAAAGGCGGAGGAGAACGACTATGATGACTACTAA ATGGCACCTCGCTATGAAGTGGAATTGAAAATACAGTCCGCTAGAGATCTCAAGAACGTCAACTGGCGCAACGGTGCCCTGAAGCCGTACGCCGTCGTTTGGATTGATCCAAGTAACAAATTTTCGACGAAGGTCGACGCCGGAGGTGACACGTCACCTTACTGGAACGAAACGCTTGACATTTCTTTCCCGTCGCCGATCGAAGATGCTACGTTGAACATCAACATCGTTCATGTCGCCAACGGCGAGAATGATGTCAAACCGCTGATCGGCGCCGCCAGACTCCGTCTCTCTGACGTCGTCGACAGTGTCGGCTTCGGCGAACGCACTGATCGAACTCTCCAATTGAAACGGCCCTCCGGCAGGCCTCAAGGGAAGGTCGAAGTTAAAGTAACAGTCCGAGAATCACGTTACCGATCATCCGATTCCTATTACGCGCCGCCGTATGGGGTCCCACCGCCTTCCTATGCCACTTCGTACTCTGCTCCTCGCGATCCATACTATGCAACGGCTCCTCCGTCACGATACTCTTCCGCCGAGTACAATGTACCGGCCCCAGACCCGGTCCCGGCACCAGCTGCGGCTCCGTACGGTCAGGCGAGTTACGGGCAGCCGGCGTATAGCAGTCAAGCGAGTTACGGGCAGCCGGCGTATAGCAGTCAAGCGAGTTACGGGCAGCCGGCGTATAGCAGTCAGGCGAGTTACGGGGAGTCGGCGGCGTATAACAGTCAGACGAGTTACGGGCAGCCGGCGGAAAAGAAGAACAAGTTCGGGATGGGGACTGGATTGGCTGTGGGTGCGGTGGCGGGAGTTTTGGGTGGATTGGCGTTGGGAGAGGGCATCGAACATATGGAGAACAAGAGGGACGAAGAAGCGGCAGAAAAGGCGGAGGAGAACGACTATGATGACTACTAA ATGGCACCTCGCTATGAAGTGGAATTGAAAATACAGTCCGCTAGAGATCTCAAGAACGTCAACTGGCGCAACGGTGCCCTGAAGCCGTACGCCGTCGTTTGGATTGATCCAAGTAACAAATTTTCGACGAAGGTCGACGCCGGAGGTGACACGTCACCTTACTGGAACGAAACGCTTGACATTTCTTTCCCGTCGCCGATCGAAGATGCTACGTTGAACATCAACATCGTTCATGTCGCCAACGGCGAGAATGATGTCAAACCGCTGATCGGCGCCGCCAGACTCCGTCTCTCTGACGTCGTCGACAGTGTCGGCTTCGGCGAACGCACTGATCGAACTCTCCAATTGAAACGGCCCTCCGGCAGGCCTCAAGGGAAGGTCGAAGTTAAAGTAACAGTCCGAGAATCACGTTACCGATCATCCGATTCCTATTACGCGCCGCCGTATGGGGTCCCACCGCCTTCCTATGCCACTTCGTACTCTGCTCCTCGCGATCCATACTATGCAACGGCTCCTCCGTCACGATACTCTTCCGCCGAGTACAATGTACCGGCCCCAGACCCGGTCCCGGCACCAGCTGCGGCTCCGTACGGTCAGGCGAGTTACGGGCAGCCGGCGTATAGCAGTCAAGCGAGTTACGGGCAGCCGGCGTATAGCAGTCAAGCGAGTTACGGGCAGCCGGCGTATAGCAGTCAGGCGAGTTACGGGGAGTCGGCGGCGTATAACAGTCAGACGAGTTACGGGCAGCCGGCGGAAAAGAAGAACAAGTTCGGGATGGGGACTGGATTGGCTGTGGGTGCGGTGGCGGGAGTTTTGGGTGGATTGGCGTTGGGAGAGGGCATCGAACATATGGAGAACAAGAGGGACGAAGAAGCGGCAGAAAAGGCGGAGGAGAACGACTATGATGACTACTAA MAPRYEVELKIQSARDLKNVNWRNGALKPYAVVWIDPSNKFSTKVDAGGDTSPYWNETLDISFPSPIEDATLNINIVHVANGENDVKPLIGAARLRLSDVVDSVGFGERTDRTLQLKRPSGRPQGKVEVKVTVRESRYRSSDSYYAPPYGVPPPSYATSYSAPRDPYYATAPPSRYSSAEYNVPAPDPVPAPAAAPYGQASYGQPAYSSQASYGQPAYSSQASYGQPAYSSQASYGESAAYNSQTSYGQPAEKKNKFGMGTGLAVGAVAGVLGGLALGEGIEHMENKRDEEAAEKAEENDYDDY
BLAST of Carg15119-RA vs. NCBI nr
Match: XP_022922918.1 (WW domain-containing protein C11B10.08-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 431.0 bits (1107), Expect = 3.3e-117 Identity = 262/304 (86.18%), Postives = 262/304 (86.18%), Query Frame = 0
BLAST of Carg15119-RA vs. NCBI nr
Match: XP_023552410.1 (protein SRC2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 430.3 bits (1105), Expect = 5.6e-117 Identity = 259/304 (85.20%), Postives = 260/304 (85.53%), Query Frame = 0
BLAST of Carg15119-RA vs. NCBI nr
Match: XP_022922921.1 (protein SRC2 homolog isoform X3 [Cucurbita moschata]) HSP 1 Score: 422.2 bits (1084), Expect = 1.5e-114 Identity = 247/304 (81.25%), Postives = 247/304 (81.25%), Query Frame = 0
BLAST of Carg15119-RA vs. NCBI nr
Match: XP_022922919.1 (protein SRC2 homolog isoform X2 [Cucurbita moschata]) HSP 1 Score: 418.7 bits (1075), Expect = 1.7e-113 Identity = 254/304 (83.55%), Postives = 254/304 (83.55%), Query Frame = 0
BLAST of Carg15119-RA vs. NCBI nr
Match: XP_022984981.1 (protein SRC2-like [Cucurbita maxima]) HSP 1 Score: 377.5 bits (968), Expect = 4.3e-101 Identity = 193/207 (93.24%), Postives = 198/207 (95.65%), Query Frame = 0
BLAST of Carg15119-RA vs. TAIR10
Match: AT5G23950.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 133.3 bits (334), Expect = 2.6e-31 Identity = 69/117 (58.97%), Postives = 82/117 (70.09%), Query Frame = 0
BLAST of Carg15119-RA vs. TAIR10
Match: AT1G07310.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 97.1 bits (240), Expect = 2.0e-20 Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 0
BLAST of Carg15119-RA vs. TAIR10
Match: AT2G13350.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 63.2 bits (152), Expect = 3.3e-10 Identity = 44/133 (33.08%), Postives = 67/133 (50.38%), Query Frame = 0
BLAST of Carg15119-RA vs. TAIR10
Match: AT3G04360.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 63.2 bits (152), Expect = 3.3e-10 Identity = 50/149 (33.56%), Postives = 74/149 (49.66%), Query Frame = 0
BLAST of Carg15119-RA vs. TAIR10
Match: AT4G01200.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 60.1 bits (144), Expect = 2.8e-09 Identity = 38/139 (27.34%), Postives = 67/139 (48.20%), Query Frame = 0
BLAST of Carg15119-RA vs. TrEMBL
Match: tr|A5BD86|A5BD86_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_002549 PE=4 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 9.0e-63 Identity = 154/303 (50.83%), Postives = 194/303 (64.03%), Query Frame = 0
BLAST of Carg15119-RA vs. TrEMBL
Match: tr|A0A1S3AZ17|A0A1S3AZ17_CUCME (protein SRC2 homolog OS=Cucumis melo OX=3656 GN=LOC103484099 PE=4 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 5.8e-62 Identity = 118/157 (75.16%), Postives = 132/157 (84.08%), Query Frame = 0
BLAST of Carg15119-RA vs. TrEMBL
Match: tr|A0A0A0LBH6|A0A0A0LBH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G183350 PE=4 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 6.0e-59 Identity = 179/299 (59.87%), Postives = 208/299 (69.57%), Query Frame = 0
BLAST of Carg15119-RA vs. TrEMBL
Match: tr|A0A2K3MB71|A0A2K3MB71_TRIPR (Putative peroxisomal membrane protein PEX13-like OS=Trifolium pratense OX=57577 GN=L195_g044130 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 1.9e-57 Identity = 181/310 (58.39%), Postives = 214/310 (69.03%), Query Frame = 0
BLAST of Carg15119-RA vs. TrEMBL
Match: tr|A0A172MLE1|A0A172MLE1_LINUS (Putative C2 domain-protein binding OS=Linum usitatissimum OX=4006 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56 Identity = 170/308 (55.19%), Postives = 202/308 (65.58%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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