Carg03939-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03939-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Hydroxyproline O-arabinosyltransferase
Location	Cucurbita_argyrosperma_scaffold_011 : 886642 .. 888767 (-)
Sequence length	1374

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTACCTTGAGTTTAGCCTGATTTCTTTGTCTAAAATGATGTTTTATAGTTACATACTCATGTCAGAGCCGGATCATATTATTGTCAAACCTATACCAAATTTATCTAAGGATGGGCTTGGGGCTGCATTTCCTTTCTTTTACATTGAACCCAAGAAGTATGAGAAGCAACTACGGAAGTTCTTCCCTGAAGACATGGGTCCAATTACGAACGTCGATCCGATAGGGAATTCGCCTGTTATTGTTGGAAAGGTATGCACACCATGCTTCTAAGTGATAACATTAGGATTCTTCTCAGCTGTTTACACTCTCTTACTCTTTCGATTAAATTTTGCTAGGATTCTCTCAACAAAATAGCTCCCACTTGGATGAATGTTTCCTTGGCTATGAAGAAGGATCCTGAAACTGATAAGGCTTTTGGTTGGGTTCTTGAAATGTAAGCTTTTCTCCTTGGAGGTTCAATTTATCTTCATCACTTCCATGGTTTTCCTTGACTTCTTTCCTTTTCATTTCCATTTGTCTTCTTCTTACATCGTGACTGCAGGTATGCTTATGCCGTTGCTTCCGCTCTACATGGTGTTGGTAACATTCTGTATAAGGACTTCATGATTCAGGTTCTAAGAGAAAATCCCTTTCTGTTTCTTTTCTGTCAGATTATCTTTTTGTATACAGCATAACATTTGTATCCATTCTCAATGCTATTTGATAACTTCATCTGGGGAAGAAGCAAAACATAATTAGCTTGAATGAGGGATAACAATTTGAAATCTTTTTGCCAAACCACGTGATATCTTACCTAATTCCATTTAGGAAACATGTGAATGTAGGAAATGAGGGACATTGGCCTTTCATTCTCCTAGGTGATGGATATCCTGATTTTCTCTGTTAGTTAACTTTTGGGACGTTGTTTCTTTACAGCCACCATGGGATACCGAAGTTGGCAAGAAGTTCATAATCCATTATACTTACGGATGTGACTACACTATGAAGGTAACAAAACAATGTCGATTATGTCGTACCAGTCTCTCTCATCGATTTACATAGCATGGCTTACCTTCTGTCTGTCTTGTTATGTCTCTGGAATACAGGGAGAACTGACTTATGGGAAGATTGGAGAATGGAGATTTGACAAAAGGTCTTATGATAGTGTCGTTCCCCCAAGAAACCTTCCCTTGCCACCACCTGGCGTACCCGAAAGCGTGGTACGTGTCCTAACCTTTGTCCTATACAGCTATCATGGTTAACTTGGTACAGGAAGTGTATTATGATTGAGTAGTTCTTAATGAATTTAAAAATTTTCAAACACAGTCTAAACTTCTATTGATGACTGAGAACATTTTCCATTAATGCATTTGCAGGTGACACTGGTGAAAATGGTTAATGAAGCCACAGCAAACATTCCTAACTGGGGATCGTAAGTAAGTTCTGATAGATGTGCTCGAGAAGTATGTTGACCCGGTACTTAATTCGATTCTTACACAATATATTATACGTTATTGGATATGTATCGATTATCTCGTATCTGATTGGCTAAGTGATAGGCAAATGTATCAATTCTGTGTAAACGTTGTTTGGTTTTTGTGCAAAATAAATAGGCTAGCATTCTCTTCAATTGTCTTGTGAAACATCATGATCATGAATGTTGAATATTTATTCCAAATTCCATGGCTAAACCCATGAAACAATCAGAGGGTTGATTGATTGAATCCAAATGTAGTAGAATATGTATGCAAAAATGAAGGTTCATAAGAGAAAGGAAAAGACCGAACCCATTATCCTCGGTGTGCTTCATTCTGTTTAGTGTCAGTCATGGCTCCCATCCATGGCGGGGGAAGCACTCTAGTTTGCTCATGAACCGTTTGAAACAATTGTGGCAGGATTATGAACTCCAGCCACTTCTTTCATAGCCACAGGACCAGCTCTGCCTCCTTCCAAGCCCTGTCCATCCCCCTTTCGCTCACATGCTAATCTTAGGGAAGCCCCTTAATGTCATTGTCATTAATGTTGGCAATTTCTTGAAACATCCCTCCACTGACCATTAGGTAATCTCGTAGTTCCAACCCAATGCTTCTAGTCAAGATTACAGGTACTTGAAATCTCACATTAATTGGAGAGGGGAACGA

mRNA sequence

ATGCTTTACCTTGAGTTTAGCCTGATTTCTTTGTCTAAAATGATGTTTTATAGTTACATACTCATGTCAGAGCCGGATCATATTATTGTCAAACCTATACCAAATTTATCTAAGGATGGGCTTGGGGCTGCATTTCCTTTCTTTTACATTGAACCCAAGAAGTATGAGAAGCAACTACGGAAGTTCTTCCCTGAAGACATGGGTCCAATTACGAACGTCGATCCGATAGGGAATTCGCCTGTTATTGTTGGAAAGGATTCTCTCAACAAAATAGCTCCCACTTGGATGAATGTTTCCTTGGCTATGAAGAAGGATCCTGAAACTGATAAGGCTTTTGGTTGGGTTCTTGAAATGTATGCTTATGCCGTTGCTTCCGCTCTACATGGTGTTGGTAACATTCTGTATAAGGACTTCATGATTCAGCCACCATGGGATACCGAAGTTGGCAAGAAGTTCATAATCCATTATACTTACGGATGTGACTACACTATGAAGGGAGAACTGACTTATGGGAAGATTGGAGAATGGAGATTTGACAAAAGGTCTTATGATAGTGTCGTTCCCCCAAGAAACCTTCCCTTGCCACCACCTGGCGTACCCGAAAGCGTGGTGACACTGGTGAAAATGGTTAATGAAGCCACAGCAAACATTCCTAACTGGGGATCGTAAGTAAGTTCTGATAGATGTGCTCGAGAAGTATGTTGACCCGGTACTTAATTCGATTCTTACACAATATATTATACGTTATTGGATATGTATCGATTATCTCGTATCTGATTGGCTAAGTGATAGGCAAATGTATCAATTCTGTGTAAACGTTGTTTGGTTTTTGTGCAAAATAAATAGGCTAGCATTCTCTTCAATTGTCTTGTGAAACATCATGATCATGAATGTTGAATATTTATTCCAAATTCCATGGCTAAACCCATGAAACAATCAGAGGGTTGATTGATTGAATCCAAATGTAGTAGAATATGTATGCAAAAATGAAGGTTCATAAGAGAAAGGAAAAGACCGAACCCATTATCCTCGGTGTGCTTCATTCTGTTTAGTGTCAGTCATGGCTCCCATCCATGGCGGGGGAAGCACTCTAGTTTGCTCATGAACCGTTTGAAACAATTGTGGCAGGATTATGAACTCCAGCCACTTCTTTCATAGCCACAGGACCAGCTCTGCCTCCTTCCAAGCCCTGTCCATCCCCCTTTCGCTCACATGCTAATCTTAGGGAAGCCCCTTAATGTCATTGTCATTAATGTTGGCAATTTCTTGAAACATCCCTCCACTGACCATTAGGTAATCTCGTAGTTCCAACCCAATGCTTCTAGTCAAGATTACAGGTACTTGAAATCTCACATTAATTGGAGAGGGGAACGA

Coding sequence (CDS)

ATGCTTTACCTTGAGTTTAGCCTGATTTCTTTGTCTAAAATGATGTTTTATAGTTACATACTCATGTCAGAGCCGGATCATATTATTGTCAAACCTATACCAAATTTATCTAAGGATGGGCTTGGGGCTGCATTTCCTTTCTTTTACATTGAACCCAAGAAGTATGAGAAGCAACTACGGAAGTTCTTCCCTGAAGACATGGGTCCAATTACGAACGTCGATCCGATAGGGAATTCGCCTGTTATTGTTGGAAAGGATTCTCTCAACAAAATAGCTCCCACTTGGATGAATGTTTCCTTGGCTATGAAGAAGGATCCTGAAACTGATAAGGCTTTTGGTTGGGTTCTTGAAATGTATGCTTATGCCGTTGCTTCCGCTCTACATGGTGTTGGTAACATTCTGTATAAGGACTTCATGATTCAGCCACCATGGGATACCGAAGTTGGCAAGAAGTTCATAATCCATTATACTTACGGATGTGACTACACTATGAAGGGAGAACTGACTTATGGGAAGATTGGAGAATGGAGATTTGACAAAAGGTCTTATGATAGTGTCGTTCCCCCAAGAAACCTTCCCTTGCCACCACCTGGCGTACCCGAAAGCGTGGTGACACTGGTGAAAATGGTTAATGAAGCCACAGCAAACATTCCTAACTGGGGATCGTAA

Protein sequence

MLYLEFSLISLSKMMFYSYILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGNSPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDFMIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPGVPESVVTLVKMVNEATANIPNWGS

Homology

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BLAST of Carg03939-RA vs. NCBI nr
Match: XP_022951448.1 (hydroxyproline O-arabinosyltransferase 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 432.2 bits (1110), Expect = 1.1e-117
Identity = 202/204 (99.02%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITN+DPIGN
Sbjct: 158 YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNIDPIGN 217

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGV NILYKDF
Sbjct: 218 SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVDNILYKDF 277

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG
Sbjct: 278 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 337

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           VPESVVTLVKMVNEATANIPNWGS
Sbjct: 338 VPESVVTLVKMVNEATANIPNWGS 361

[Close]

BLAST of Carg03939-RA vs. NCBI nr
Match: XP_023537512.1 (hydroxyproline O-arabinosyltransferase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 432.2 bits (1110), Expect = 1.1e-117
Identity = 202/204 (99.02%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITN+DPIGN
Sbjct: 158 YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNIDPIGN 217

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGV NILYKDF
Sbjct: 218 SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVDNILYKDF 277

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG
Sbjct: 278 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 337

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           VPESVVTLVKMVNEATANIPNWGS
Sbjct: 338 VPESVVTLVKMVNEATANIPNWGS 361

[Close]

BLAST of Carg03939-RA vs. NCBI nr
Match: XP_023002399.1 (hydroxyproline O-arabinosyltransferase 1-like [Cucurbita maxima])

HSP 1 Score: 430.3 bits (1105), Expect = 4.1e-117
Identity = 200/204 (98.04%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPED GPITN+DPIGN
Sbjct: 158 YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDKGPITNIDPIGN 217

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF
Sbjct: 218 SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 277

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYD VVPPRNLPLPPPG
Sbjct: 278 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDRVVPPRNLPLPPPG 337

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           +PESVVTLVKMVNEATANIPNWGS
Sbjct: 338 IPESVVTLVKMVNEATANIPNWGS 361

[Close]

BLAST of Carg03939-RA vs. NCBI nr
Match: XP_008445244.1 (PREDICTED: uncharacterized protein LOC103488330 [Cucumis melo])

HSP 1 Score: 420.6 bits (1080), Expect = 3.3e-114
Identity = 195/204 (95.59%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYE QLRKFFPED GPITN+DPIGN
Sbjct: 158 YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESQLRKFFPEDKGPITNIDPIGN 217

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGK+SL KIAPTWMNVSLAMKKDP+TDKAFGWVLEMYAYAVASALHGVGNILYKDF
Sbjct: 218 SPVIVGKESLKKIAPTWMNVSLAMKKDPDTDKAFGWVLEMYAYAVASALHGVGNILYKDF 277

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTEVGKKFIIHYTYGCDY MKG+LTYGKIGEWRFDKRSYD+VVPPRNLPLPPPG
Sbjct: 278 MIQPPWDTEVGKKFIIHYTYGCDYDMKGKLTYGKIGEWRFDKRSYDNVVPPRNLPLPPPG 337

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           VPESVVTLVKMVNEATANIPNWGS
Sbjct: 338 VPESVVTLVKMVNEATANIPNWGS 361

[Close]

BLAST of Carg03939-RA vs. NCBI nr
Match: XP_004138714.1 (PREDICTED: uncharacterized protein LOC101214063 [Cucumis sativus] >KGN62972.1 hypothetical protein Csa_2G382460 [Cucumis sativus])

HSP 1 Score: 419.1 bits (1076), Expect = 9.5e-114
Identity = 195/204 (95.59%), Postives = 199/204 (97.55%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYE QLRKFFPED GPITN+DPIGN
Sbjct: 158 YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESQLRKFFPEDKGPITNIDPIGN 217

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGK+SL KIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALH VGNILYKDF
Sbjct: 218 SPVIVGKESLKKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHDVGNILYKDF 277

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTEVGKKFIIHYTYGCDY MKG+LTYGKIGEWRFDKRSYD+VVPPRNLPLPPPG
Sbjct: 278 MIQPPWDTEVGKKFIIHYTYGCDYDMKGKLTYGKIGEWRFDKRSYDNVVPPRNLPLPPPG 337

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           VPESVVTLVKMVNEATANIPNWGS
Sbjct: 338 VPESVVTLVKMVNEATANIPNWGS 361

[Close]

BLAST of Carg03939-RA vs. TAIR10
Match: AT5G25265.1 (unknown protein)

HSP 1 Score: 389.0 bits (998), Expect = 1.9e-108
Identity = 178/204 (87.25%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILMSEPDHIIVKPIPNL+KDGLGAAFPFFYIEPKKYEK LRK++PE  GP+TN+DPIGN
Sbjct: 163 YILMSEPDHIIVKPIPNLAKDGLGAAFPFFYIEPKKYEKVLRKYYPEVRGPVTNIDPIGN 222

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGKD+L KIAPTWMNVSLAMKKDPE DKAFGWVLEMYAYAV+SALHGV NIL+KDF
Sbjct: 223 SPVIVGKDALKKIAPTWMNVSLAMKKDPEADKAFGWVLEMYAYAVSSALHGVSNILHKDF 282

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWD EVG K+IIHYTYGCDY MKG+LTYGKIGEWRFDKRSYDS  PPRNL +PPPG
Sbjct: 283 MIQPPWDIEVGDKYIIHYTYGCDYDMKGKLTYGKIGEWRFDKRSYDSKPPPRNLTMPPPG 342

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           V +SVVTLVKM+NEATANIPNWGS
Sbjct: 343 VSQSVVTLVKMINEATANIPNWGS 366

[Close]

BLAST of Carg03939-RA vs. TAIR10
Match: AT2G25260.1 (unknown protein)

HSP 1 Score: 352.4 bits (903), Expect = 2.0e-97
Identity = 163/204 (79.90%), Postives = 179/204 (87.75%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILM+EPDHIIVKPIPNL++  L AAFPFFYIEPKKYE  LRKFFP++ GPI+ +DPIGN
Sbjct: 155 YILMAEPDHIIVKPIPNLARGNLAAAFPFFYIEPKKYESVLRKFFPKENGPISRIDPIGN 214

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIV K++L KIAPTWMNVSLAMK DP+TDKAFGWVLEMYAYAV+SALHGV NIL+KDF
Sbjct: 215 SPVIVTKNALMKIAPTWMNVSLAMKNDPQTDKAFGWVLEMYAYAVSSALHGVSNILHKDF 274

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTE  K FIIHYTYGCD+ MKG++  GKIGEWRFDKRSY    PPRNL LPP G
Sbjct: 275 MIQPPWDTETKKTFIIHYTYGCDFDMKGKMMVGKIGEWRFDKRSYGDKPPPRNLTLPPRG 334

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           VPESVVTLV M+NEATANIPNW S
Sbjct: 335 VPESVVTLVTMINEATANIPNWES 358

[Close]

BLAST of Carg03939-RA vs. TAIR10
Match: AT5G13500.1 (unknown protein)

HSP 1 Score: 342.4 bits (877), Expect = 2.0e-94
Identity = 153/202 (75.74%), Postives = 173/202 (85.64%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           Y+LM+EPDH+ V P+PNL+  G  AAFPFFYI P+KYE  +RK++P +MGP+TN+DPIGN
Sbjct: 154 YVLMAEPDHVFVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYPAEMGPVTNIDPIGN 213

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVI+ K+SL KIAPTWMNVSL MK DPETDKAFGWVLEMY YA+ASA+HGV +IL KDF
Sbjct: 214 SPVIISKESLEKIAPTWMNVSLTMKNDPETDKAFGWVLEMYGYAIASAIHGVRHILRKDF 273

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           M+QPPWD     KFIIHYTYGCDY MKGELTYGKIGEWRFDKRS+    PPRN+ LPPPG
Sbjct: 274 MLQPPWDLSTKGKFIIHYTYGCDYNMKGELTYGKIGEWRFDKRSHLRGPPPRNMSLPPPG 333

Query: 199 VPESVVTLVKMVNEATANIPNW 221
           VPESVVTLVKMVNEATA IPNW
Sbjct: 334 VPESVVTLVKMVNEATATIPNW 355

[Close]

BLAST of Carg03939-RA vs. Swiss-Prot
Match: sp|Q8W4E6|HPAT1_ARATH (Hydroxyproline O-arabinosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=HPAT1 PE=1 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 3.4e-107
Identity = 178/204 (87.25%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILMSEPDHIIVKPIPNL+KDGLGAAFPFFYIEPKKYEK LRK++PE  GP+TN+DPIGN
Sbjct: 163 YILMSEPDHIIVKPIPNLAKDGLGAAFPFFYIEPKKYEKVLRKYYPEVRGPVTNIDPIGN 222

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGKD+L KIAPTWMNVSLAMKKDPE DKAFGWVLEMYAYAV+SALHGV NIL+KDF
Sbjct: 223 SPVIVGKDALKKIAPTWMNVSLAMKKDPEADKAFGWVLEMYAYAVSSALHGVSNILHKDF 282

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWD EVG K+IIHYTYGCDY MKG+LTYGKIGEWRFDKRSYDS  PPRNL +PPPG
Sbjct: 283 MIQPPWDIEVGDKYIIHYTYGCDYDMKGKLTYGKIGEWRFDKRSYDSKPPPRNLTMPPPG 342

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           V +SVVTLVKM+NEATANIPNWGS
Sbjct: 343 VSQSVVTLVKMINEATANIPNWGS 366

[Close]

BLAST of Carg03939-RA vs. Swiss-Prot
Match: sp|Q494Q2|HPAT2_ARATH (Hydroxyproline O-arabinosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=HPAT2 PE=1 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.6e-96
Identity = 163/204 (79.90%), Postives = 179/204 (87.75%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILM+EPDHIIVKPIPNL++  L AAFPFFYIEPKKYE  LRKFFP++ GPI+ +DPIGN
Sbjct: 155 YILMAEPDHIIVKPIPNLARGNLAAAFPFFYIEPKKYESVLRKFFPKENGPISRIDPIGN 214

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIV K++L KIAPTWMNVSLAMK DP+TDKAFGWVLEMYAYAV+SALHGV NIL+KDF
Sbjct: 215 SPVIVTKNALMKIAPTWMNVSLAMKNDPQTDKAFGWVLEMYAYAVSSALHGVSNILHKDF 274

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTE  K FIIHYTYGCD+ MKG++  GKIGEWRFDKRSY    PPRNL LPP G
Sbjct: 275 MIQPPWDTETKKTFIIHYTYGCDFDMKGKMMVGKIGEWRFDKRSYGDKPPPRNLTLPPRG 334

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           VPESVVTLV M+NEATANIPNW S
Sbjct: 335 VPESVVTLVTMINEATANIPNWES 358

[Close]

BLAST of Carg03939-RA vs. Swiss-Prot
Match: sp|Q9FY51|HPAT3_ARATH (Hydroxyproline O-arabinosyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=HPAT3 PE=1 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.7e-93
Identity = 153/202 (75.74%), Postives = 173/202 (85.64%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           Y+LM+EPDH+ V P+PNL+  G  AAFPFFYI P+KYE  +RK++P +MGP+TN+DPIGN
Sbjct: 154 YVLMAEPDHVFVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYPAEMGPVTNIDPIGN 213

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVI+ K+SL KIAPTWMNVSL MK DPETDKAFGWVLEMY YA+ASA+HGV +IL KDF
Sbjct: 214 SPVIISKESLEKIAPTWMNVSLTMKNDPETDKAFGWVLEMYGYAIASAIHGVRHILRKDF 273

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           M+QPPWD     KFIIHYTYGCDY MKGELTYGKIGEWRFDKRS+    PPRN+ LPPPG
Sbjct: 274 MLQPPWDLSTKGKFIIHYTYGCDYNMKGELTYGKIGEWRFDKRSHLRGPPPRNMSLPPPG 333

Query: 199 VPESVVTLVKMVNEATANIPNW 221
           VPESVVTLVKMVNEATA IPNW
Sbjct: 334 VPESVVTLVKMVNEATATIPNW 355

[Close]

BLAST of Carg03939-RA vs. TrEMBL
Match: tr|A0A1S3BBR3|A0A1S3BBR3_CUCME (uncharacterized protein LOC103488330 OS=Cucumis melo OX=3656 GN=LOC103488330 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 2.2e-114
Identity = 195/204 (95.59%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYE QLRKFFPED GPITN+DPIGN
Sbjct: 158 YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESQLRKFFPEDKGPITNIDPIGN 217

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGK+SL KIAPTWMNVSLAMKKDP+TDKAFGWVLEMYAYAVASALHGVGNILYKDF
Sbjct: 218 SPVIVGKESLKKIAPTWMNVSLAMKKDPDTDKAFGWVLEMYAYAVASALHGVGNILYKDF 277

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTEVGKKFIIHYTYGCDY MKG+LTYGKIGEWRFDKRSYD+VVPPRNLPLPPPG
Sbjct: 278 MIQPPWDTEVGKKFIIHYTYGCDYDMKGKLTYGKIGEWRFDKRSYDNVVPPRNLPLPPPG 337

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           VPESVVTLVKMVNEATANIPNWGS
Sbjct: 338 VPESVVTLVKMVNEATANIPNWGS 361

[Close]

BLAST of Carg03939-RA vs. TrEMBL
Match: tr|A0A0A0LQB9|A0A0A0LQB9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382460 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 6.3e-114
Identity = 195/204 (95.59%), Postives = 199/204 (97.55%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYE QLRKFFPED GPITN+DPIGN
Sbjct: 158 YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESQLRKFFPEDKGPITNIDPIGN 217

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGK+SL KIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALH VGNILYKDF
Sbjct: 218 SPVIVGKESLKKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHDVGNILYKDF 277

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTEVGKKFIIHYTYGCDY MKG+LTYGKIGEWRFDKRSYD+VVPPRNLPLPPPG
Sbjct: 278 MIQPPWDTEVGKKFIIHYTYGCDYDMKGKLTYGKIGEWRFDKRSYDNVVPPRNLPLPPPG 337

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           VPESVVTLVKMVNEATANIPNWGS
Sbjct: 338 VPESVVTLVKMVNEATANIPNWGS 361

[Close]

BLAST of Carg03939-RA vs. TrEMBL
Match: tr|A0A2I4GIQ1|A0A2I4GIQ1_9ROSI (uncharacterized protein LOC109008222 OS=Juglans regia OX=51240 GN=LOC109008222 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 1.5e-112
Identity = 190/204 (93.14%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILM+EPDHIIVKPIPNLS+DGLGAAFPFFYIEPKKYE  LRK+FPED GP+TN+DPIGN
Sbjct: 163 YILMAEPDHIIVKPIPNLSRDGLGAAFPFFYIEPKKYESVLRKYFPEDKGPVTNIDPIGN 222

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGK+SL KIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF
Sbjct: 223 SPVIVGKESLKKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 282

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTEVGKKFIIHYTYGCDY MKGELTYGKIGEWRFDKRSYD++ PPRNLPLPPPG
Sbjct: 283 MIQPPWDTEVGKKFIIHYTYGCDYNMKGELTYGKIGEWRFDKRSYDAIPPPRNLPLPPPG 342

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           VPESVVTLVKMVNEATANIPNWGS
Sbjct: 343 VPESVVTLVKMVNEATANIPNWGS 366

[Close]

BLAST of Carg03939-RA vs. TrEMBL
Match: tr|B9IL17|B9IL17_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G023100v3 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 2.6e-112
Identity = 190/204 (93.14%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILM+EPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYE  LRK+FPED GPITN+DPIGN
Sbjct: 159 YILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPEDKGPITNIDPIGN 218

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGK+SL KIAPTWMNVSLAMKKDPETDKAFGWVLEMY YAV+SALHGVGNILYKDF
Sbjct: 219 SPVIVGKESLKKIAPTWMNVSLAMKKDPETDKAFGWVLEMYGYAVSSALHGVGNILYKDF 278

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTEVGKKFIIHYTYGCDY MKG+LTYGKIGEWRFDKRSYD+V+PPRNLPLPPPG
Sbjct: 279 MIQPPWDTEVGKKFIIHYTYGCDYDMKGKLTYGKIGEWRFDKRSYDTVIPPRNLPLPPPG 338

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           VPESVVTLVKMVNEATANIPNWGS
Sbjct: 339 VPESVVTLVKMVNEATANIPNWGS 362

[Close]

BLAST of Carg03939-RA vs. TrEMBL
Match: tr|A0A2K1WUN5|A0A2K1WUN5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G023100v3 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 2.6e-112
Identity = 190/204 (93.14%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 19  YILMSEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYEKQLRKFFPEDMGPITNVDPIGN 78
           YILM+EPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYE  LRK+FPED GPITN+DPIGN
Sbjct: 68  YILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLRKYFPEDKGPITNIDPIGN 127

Query: 79  SPVIVGKDSLNKIAPTWMNVSLAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILYKDF 138
           SPVIVGK+SL KIAPTWMNVSLAMKKDPETDKAFGWVLEMY YAV+SALHGVGNILYKDF
Sbjct: 128 SPVIVGKESLKKIAPTWMNVSLAMKKDPETDKAFGWVLEMYGYAVSSALHGVGNILYKDF 187

Query: 139 MIQPPWDTEVGKKFIIHYTYGCDYTMKGELTYGKIGEWRFDKRSYDSVVPPRNLPLPPPG 198
           MIQPPWDTEVGKKFIIHYTYGCDY MKG+LTYGKIGEWRFDKRSYD+V+PPRNLPLPPPG
Sbjct: 188 MIQPPWDTEVGKKFIIHYTYGCDYDMKGKLTYGKIGEWRFDKRSYDTVIPPRNLPLPPPG 247

Query: 199 VPESVVTLVKMVNEATANIPNWGS 223
           VPESVVTLVKMVNEATANIPNWGS
Sbjct: 248 VPESVVTLVKMVNEATANIPNWGS 271

The following BLAST results are available for this feature:

BLAST of Carg03939-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951448.1	1.1e-117	99.02	hydroxyproline O-arabinosyltransferase 1-like isoform X1 [Cucurbita moschata]	[more]
XP_023537512.1	1.1e-117	99.02	hydroxyproline O-arabinosyltransferase 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023002399.1	4.1e-117	98.04	hydroxyproline O-arabinosyltransferase 1-like [Cucurbita maxima]	[more]
XP_008445244.1	3.3e-114	95.59	PREDICTED: uncharacterized protein LOC103488330 [Cucumis melo]	[more]
XP_004138714.1	9.5e-114	95.59	PREDICTED: uncharacterized protein LOC101214063 [Cucumis sativus] >KGN62972.1 hy...	[more]

BLAST of Carg03939-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25265.1	1.9e-108	87.25	unknown protein	[more]
AT2G25260.1	2.0e-97	79.90	unknown protein	[more]
AT5G13500.1	2.0e-94	75.74	unknown protein	[more]

BLAST of Carg03939-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8W4E6\|HPAT1_ARATH	3.4e-107	87.25	Hydroxyproline O-arabinosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=HPAT...	[more]
sp\|Q494Q2\|HPAT2_ARATH	3.6e-96	79.90	Hydroxyproline O-arabinosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=HPAT...	[more]
sp\|Q9FY51\|HPAT3_ARATH	3.7e-93	75.74	Hydroxyproline O-arabinosyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=HPAT...	[more]

BLAST of Carg03939-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BBR3\|A0A1S3BBR3_CUCME	2.2e-114	95.59	uncharacterized protein LOC103488330 OS=Cucumis melo OX=3656 GN=LOC103488330 PE=...	[more]
tr\|A0A0A0LQB9\|A0A0A0LQB9_CUCSA	6.3e-114	95.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382460 PE=4 SV=1	[more]
tr\|A0A2I4GIQ1\|A0A2I4GIQ1_9ROSI	1.5e-112	93.14	uncharacterized protein LOC109008222 OS=Juglans regia OX=51240 GN=LOC109008222 P...	[more]
tr\|B9IL17\|B9IL17_POPTR	2.6e-112	93.14	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G023100v3 PE=...	[more]
tr\|A0A2K1WUN5\|A0A2K1WUN5_POPTR	2.6e-112	93.14	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G023100v3 PE=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03939	Carg03939	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03939-RA	Carg03939-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03939-RA.three_prime_UTR.1	Carg03939-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03939-RA.CDS.6	Carg03939-RA.CDS.6	CDS
Carg03939-RA.CDS.5	Carg03939-RA.CDS.5	CDS
Carg03939-RA.CDS.4	Carg03939-RA.CDS.4	CDS
Carg03939-RA.CDS.3	Carg03939-RA.CDS.3	CDS
Carg03939-RA.CDS.2	Carg03939-RA.CDS.2	CDS
Carg03939-RA.CDS.1	Carg03939-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03939-RA.exon.6	Carg03939-RA.exon.6	exon
Carg03939-RA.exon.5	Carg03939-RA.exon.5	exon
Carg03939-RA.exon.4	Carg03939-RA.exon.4	exon
Carg03939-RA.exon.3	Carg03939-RA.exon.3	exon
Carg03939-RA.exon.2	Carg03939-RA.exon.2	exon
Carg03939-RA.exon.1	Carg03939-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31485:SF3	SUBFAMILY NOT NAMED	coord: 18..222
None	No IPR available	PANTHER	PTHR31485	FAMILY NOT NAMED	coord: 18..222