Carg24524-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGGAGCTCATCCACCAAAACCACGCCATTTTTCTCGGCAGCTATTCCACCCACTTCTCCTTCCCACTCCTCCTCGGCCCTTCTGCAATTCCTTATCTCATCAATCTCCCCGGTTCCGGCCGCCCGGTCCGTGGTGAGCTGTATGCCGTGTCCGATCGTGGGCTCGCTCTGATCGACGAGTTGGAAGAAACCCGCGTCGGCTACTATGATCGCTTGCCGGTTCAGCTCGTTGGAGGCGGGAACGGCGGCGACACGGTGGTGATCGGAGCTGAGTGCTATTTTGCTGGAAAGGGAAATTGGGAAGGGCTGTGGAGTGGGGAAGATAGAGAGACATTGGAGGAGTATACGGAGCTGGAGGCTATGCAGTATGTGGGGAAGGTTCAAAGATCGAAGCTTTTTCCATTCGGGTTGGATTCGAAAATTTGATGAAGTTTGAAGGGTAGTTTTGGAAGTTTAAAAGTTTCTCACAGGTTCGATGAGATCAGATCTCTCAAACGAGCTATAATTAATGTTTAGAGTATAAATGAAACGAGTGGTACAAATTGTCGTTTTTGGAATTAATAAGAATATAATAACTTAGTATATAAGATATGATAGGATAAATTCATAGTATGGGTGTGACATTTTTCTCACTTAAACTAATCATCGTTCTTGATAACTTTCTCGTGAACACAATTACTTCATGAATTGCAATAACAAACATGACTAATAACGCTCGTGCGAACATGTTTGACACGTATGAACTTTTCCTCGTTTTAGTTATTTGGGCTGTCGGTAAGCTTCCGCTCCAAAATATCATTCCATGTAAATACGGTCGGCTCTTTTTGCCAATCATTAAAAAATAATAATAATTAAATACTCAAGTTGTAAAGAAGTCTTGAAAGATAAATCTAAAACAAAATTTTTAAAAGAAAGTTGATGATTAAATAATATTTAAACCTCAAAAAAGCTTTTGTGGAAAATTAAATTTCCTTTAGTCCTATTAAAAAAAAAGTAATTTTAAAATAGAATTTAATGATTAATAATTATTGTAATAATCCGAAAAAAAAAAATTATCCGAGATCGCTTAAGTTGAGAAGTGGGGAGCTCGCCTTCACTATAAAGGGAGATTTCTTACTCCATTTTATCATCTCACTTGAACGATTCAAAGTCAGTTGAAAAATACATTTTTTTAATGACTCCAGGCCGACATTTTCACTGATCCGACTTGAATATGTTAAACTCTGACTCTTTCCTACTCGTTTCAACACTTCGAAAGCATTCAAGGTTAATATGGTAAAATTTAAATTATTTTATTCAAAATTGATTTTAGCAAACTTTTGGAGTAAAGAGTAAAGTATTTTATGCCGCTCCGACTCTTAATTACTAGTTTCAACTCTTCGAGAGCGTTTAAGGTTAGTATAAGTACCTTTCTAATTTAAATATTTAGAGCAAAATTTAAATTATTTGGACCAGAGTTTAAATTATTTTCTCCAAAATTAGGTTTAACTAGCTTGAATCATCCGGTTTATATTATTTTATAGAATCAATTCTCACATTAGAATTTTGATGGATGATTGTTGGACTGCTTCGGTAGAGTTAAATTTTAGAGACGAGCGTTAAGCTAGCATCAAGCATCAAGGGATCGTAGTAGCTTTAGTCTAGGCCAACGAAGTAAGTGAATCTACTATCGACTCGATCAGAATAGTTATCTTATGGATAATGATACGTGCTCAGCGAACACTGCACGTGTCATGTGTTTGATATGATTTGTTTATGATGATATGTTATGCTATGATGATATGGTGTGTTATGATGCTATGATATGTATGATGACGTGATATGTTATAATGACATGAGATGTATGACGATATAACATGTTATGATGATATATCATGCTATAATGATAATATGCTTGGCAATGAAGTGTATTGCATGCTATGACATGTACAGTTGACGGCGGCATCACATCAAAGGCTATGGAACCTACATAGGGTAGTTGCATTTATTTTCCTAGATCTTGGGTTAGTATTCTTCTATGACACCATTTTATGAAGTCGGTTTTAATGTTTCCACATAAAGAATTTAGGTCATACGTATGGTAGCGACTCTAAGTCCCTAGAAAATTAGGATAATACTAATAATTTCCTCATATAATAATACTTGTCAACCCGTGCATAATTCAACCGATTAATTAAGATATATATTTTAATTTTTGAATTTATGTATTAAATTATGCTGATTGAGCATGAAACGAGTTCCTCTCTACAACAATAATGATCGACTATGTAGCTACTCACGACACTAGTTTTTCTTTATATGTGAGATTCCACATCGGTTAGAGAGGGGAACAAAATATTCCTTATAAGGGTATGAAATCTTTCCATAGTAGGCACGTTTTAAAACCGTGAGGTTGATGGCGATACGCTACAAGTCAAAGCGGACAATATCTGCTAGCGGTGAGCTTATGGTGTTAAAAATAGTATCAGAGCTAAACATCCGACGATATGTCAACGGGGACGCTAGGTCCCTAAAAGGGTAGATAAATAGACACGTTTCTAAACGGTAAAACATATTATAAAAATTATTTGAGTTTTTACCATGTAAAAAGGATAAAAAAATTGGAGAAAGAAGTTGGAAAGCAAGTGGGTAGACTTCGTGGCCACCAACGACAAATCAAGCTGACTCAATTTTGTTTGTCCATATTATGCAATCCTTTTCTTTATAAATAAATAAATAAATAAATTATATGGTTTTTCTAATTTTAATTGGCCTATTTTTTTTATTAAAATTATTATTCATTATCCTAATGCATGACTTATATTTGTATGGTTGATGGGTAATTTTGTAATTTCACTTATCTTTTGTTCATCATTATTGTATAATCGAAATTTTTTCTTGGACTATTCGACAATAAAACCAGAAGCCCATTTTTTTTATAACGAAGGCCCACCTCACGGCCCAACATAGTTTTGGGCTGAACAAGTACATGCCTCAAAAGAACCAAACCGAGCCAGTTTCGACCCGGATGAACCCTTGTGTTTATGAATGAGGGGCAATGATACGAGCCATGGACTAGCAACCTGACCGGTTAGACGAACATGACTCTCCACAATAGTATGATATTGTCCACTTTGAGCACAAAGTCTCATGACTTTGCTTTGGGTTTATCCAAAAGACCTCAAACCAATAGAGAGTCATTCTTTGACTATAAAGCCACGAGTCATTTCTTAAATTAGCTAACGTAGGACAATCCTCAACAAAACAATCATGGTACTTATGTCCAAAGTAAAATCACGAGAGCTTTATGTTCAAAGTGGATAATACCATACCATTGTGTGGAGAGTCGTGATTTCTAACATGGTATCAGAGCCATGCCCTAAACTTAGTCATGCTAATAAAATCCTCAAATGTCAAACAAAGTATTGTGAGTCTTGAAGGTATAGTCAAAAAGTGACTAAAGTGTCGAACAAAAGGTGTATTTTGTTCGAAACCTCTAAAAGAGGAATCGAGCCTCGATTAAGGGGAGGTTGTTTGAGGGTTCCATAGGCCTCAGGGTAGGCTCTATAACGTACTTTGTTCGAGAGGAGGATTGTTGAGAATTGTCCCGCATTGGTTAATTTAGGTAATGATCATGACTTTATAAGTAAGGAATACTATTTCGAGGCCTTCTTGAAAGCCTAAAGCAAAGTGATGAGAGCTTATGTTCAAAGTGGACAACCCCCGATTTTCAGGAGGAGTTCAATGTGGTCGGATGTGAGGGAACCACATATCAAGCCCCGACCCGAATTTATTAATTATTTTATTTTTATAATATATATTTAAGAAGTTAGGAATTGAGAGGAATTTGCAATTGCAATGGAAAACGCAACGGAAAACGAAGGTCCAAAACGACGCCTGATCTTCACCTACGGCACACTAAAAAGAGGCTTCCCAAATCACAACCTGACAAAGGATCTCATCGACAATAACGACGCCGTTTTCCTGGGCAACTATTCCACCCAATTTTCATTCCCTCTCATAATCGGACCTTATGGTGTTCCTTACCTCATCAATCTCCCCGGTTCCGGCCGCCGCGTCCGTGGCGAGGTGTACGCCGTCTCAGATCGTGGTCTCATCAGGCTCGACGAGTTGGAGGACACCGCCGTTGGCCACTACGACAGGCTGCCGGTTCTCGTCGTCGGCAACGACGGCGACACGGTGGGGATCGCGGCGGAGTGCTATTTCGCCGGAAGGGGAGTTTGGGAAGGGCTGTGGAGAGGGAAAGACGGAGAGGAACTGGCGGAGTATACGACACGGGAGGCATTGAAGTATGTGAGGAAGGACCAACGATCCAAGCGTCTTGCACGAATTTAG ATGCAGGAGCTCATCCACCAAAACCACGCCATTTTTCTCGGCAGCTATTCCACCCACTTCTCCTTCCCACTCCTCCTCGGCCCTTCTGCAATTCCTTATCTCATCAATCTCCCCGGTTCCGGCCGCCCGGTCCGTGGTGAGCTGTATGCCGTGTCCGATCGTGGGCTCGCTCTGATCGACGAGTTGGAAGAAACCCGCGTCGGCTACTATGATCGCTTGCCGGTTCAGCTCGTTGGAGGCGGGAACGGCGGCGACACGGTGGTGATCGGAGCTGAGTGCTATTTTGCTGGAAAGGGAAATTGGGAAGGGCTGTGGAGTGGGGAAGATAGAGAGACATTGGAGGAGTATACGGAGCTGGAGGCTATGCAGTATGTGGGGAAGGTTCAAAGATCGAAGCTTTTTCCATTCGGAGGCTTCCCAAATCACAACCTGACAAAGGATCTCATCGACAATAACGACGCCGTTTTCCTGGGCAACTATTCCACCCAATTTTCATTCCCTCTCATAATCGGACCTTATGGTGTTCCTTACCTCATCAATCTCCCCGGTTCCGGCCGCCGCGTCCGTGGCGAGGTGTACGCCGTCTCAGATCGTGGTCTCATCAGGCTCGACGAGTTGGAGGACACCGCCGTTGGCCACTACGACAGGCTGCCGGTTCTCGTCGTCGGCAACGACGGCGACACGGTGGGGATCGCGGCGGAGTGCTATTTCGCCGGAAGGGGAGTTTGGGAAGGGCTGTGGAGAGGGAAAGACGGAGAGGAACTGGCGGAGTATACGACACGGGAGGCATTGAAGTATGTGAGGAAGGACCAACGATCCAAGCGTCTTGCACGAATTTAG ATGCAGGAGCTCATCCACCAAAACCACGCCATTTTTCTCGGCAGCTATTCCACCCACTTCTCCTTCCCACTCCTCCTCGGCCCTTCTGCAATTCCTTATCTCATCAATCTCCCCGGTTCCGGCCGCCCGGTCCGTGGTGAGCTGTATGCCGTGTCCGATCGTGGGCTCGCTCTGATCGACGAGTTGGAAGAAACCCGCGTCGGCTACTATGATCGCTTGCCGGTTCAGCTCGTTGGAGGCGGGAACGGCGGCGACACGGTGGTGATCGGAGCTGAGTGCTATTTTGCTGGAAAGGGAAATTGGGAAGGGCTGTGGAGTGGGGAAGATAGAGAGACATTGGAGGAGTATACGGAGCTGGAGGCTATGCAGTATGTGGGGAAGGTTCAAAGATCGAAGCTTTTTCCATTCGGAGGCTTCCCAAATCACAACCTGACAAAGGATCTCATCGACAATAACGACGCCGTTTTCCTGGGCAACTATTCCACCCAATTTTCATTCCCTCTCATAATCGGACCTTATGGTGTTCCTTACCTCATCAATCTCCCCGGTTCCGGCCGCCGCGTCCGTGGCGAGGTGTACGCCGTCTCAGATCGTGGTCTCATCAGGCTCGACGAGTTGGAGGACACCGCCGTTGGCCACTACGACAGGCTGCCGGTTCTCGTCGTCGGCAACGACGGCGACACGGTGGGGATCGCGGCGGAGTGCTATTTCGCCGGAAGGGGAGTTTGGGAAGGGCTGTGGAGAGGGAAAGACGGAGAGGAACTGGCGGAGTATACGACACGGGAGGCATTGAAGTATGTGAGGAAGGACCAACGATCCAAGCGTCTTGCACGAATTTAG MQELIHQNHAIFLGSYSTHFSFPLLLGPSAIPYLINLPGSGRPVRGELYAVSDRGLALIDELEETRVGYYDRLPVQLVGGGNGGDTVVIGAECYFAGKGNWEGLWSGEDRETLEEYTELEAMQYVGKVQRSKLFPFGGFPNHNLTKDLIDNNDAVFLGNYSTQFSFPLIIGPYGVPYLINLPGSGRRVRGEVYAVSDRGLIRLDELEDTAVGHYDRLPVLVVGNDGDTVGIAAECYFAGRGVWEGLWRGKDGEELAEYTTREALKYVRKDQRSKRLARI
BLAST of Carg24524-RA vs. NCBI nr
Match: XP_022963779.1 (putative gamma-glutamylcyclotransferase At3g02910 [Cucurbita moschata]) HSP 1 Score: 297.0 bits (759), Expect = 6.8e-77 Identity = 145/155 (93.55%), Postives = 148/155 (95.48%), Query Frame = 0
BLAST of Carg24524-RA vs. NCBI nr
Match: XP_022967444.1 (putative gamma-glutamylcyclotransferase At3g02910 [Cucurbita maxima]) HSP 1 Score: 285.0 bits (728), Expect = 2.7e-73 Identity = 139/152 (91.45%), Postives = 142/152 (93.42%), Query Frame = 0
BLAST of Carg24524-RA vs. NCBI nr
Match: XP_023511540.1 (putative gamma-glutamylcyclotransferase At3g02910 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 284.3 bits (726), Expect = 4.6e-73 Identity = 139/155 (89.68%), Postives = 142/155 (91.61%), Query Frame = 0
BLAST of Carg24524-RA vs. NCBI nr
Match: XP_023511539.1 (putative gamma-glutamylcyclotransferase At3g02910 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 273.5 bits (698), Expect = 8.1e-70 Identity = 131/137 (95.62%), Postives = 132/137 (96.35%), Query Frame = 0
BLAST of Carg24524-RA vs. NCBI nr
Match: XP_004136393.1 (PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Cucumis sativus] >KGN60378.1 hypothetical protein Csa_3G902210 [Cucumis sativus]) HSP 1 Score: 195.3 bits (495), Expect = 2.8e-46 Identity = 94/150 (62.67%), Postives = 115/150 (76.67%), Query Frame = 0
BLAST of Carg24524-RA vs. TAIR10
Match: AT5G46720.1 (AIG2-like (avirulence induced gene) family protein) HSP 1 Score: 125.9 bits (315), Expect = 3.8e-29 Identity = 65/156 (41.67%), Postives = 92/156 (58.97%), Query Frame = 0
BLAST of Carg24524-RA vs. TAIR10
Match: AT3G02910.1 (AIG2-like (avirulence induced gene) family protein) HSP 1 Score: 119.0 bits (297), Expect = 4.6e-27 Identity = 66/151 (43.71%), Postives = 84/151 (55.63%), Query Frame = 0
BLAST of Carg24524-RA vs. Swiss-Prot
Match: sp|Q9M8T3|Y2910_ARATH (Putative gamma-glutamylcyclotransferase At3g02910 OS=Arabidopsis thaliana OX=3702 GN=At3g02910 PE=2 SV=2) HSP 1 Score: 119.0 bits (297), Expect = 8.3e-26 Identity = 66/151 (43.71%), Postives = 84/151 (55.63%), Query Frame = 0
BLAST of Carg24524-RA vs. Swiss-Prot
Match: sp|Q9W0Y2|YS11_DROME (Putative gamma-glutamylcyclotransferase CG2811 OS=Drosophila melanogaster OX=7227 GN=CG2811 PE=2 SV=2) HSP 1 Score: 68.9 bits (167), Expect = 9.9e-11 Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 0
BLAST of Carg24524-RA vs. Swiss-Prot
Match: sp|Q9BVM4|GGACT_HUMAN (Gamma-glutamylaminecyclotransferase OS=Homo sapiens OX=9606 GN=GGACT PE=1 SV=2) HSP 1 Score: 60.5 bits (145), Expect = 3.5e-08 Identity = 43/143 (30.07%), Postives = 66/143 (46.15%), Query Frame = 0
BLAST of Carg24524-RA vs. Swiss-Prot
Match: sp|Q923B0|GGACT_MOUSE (Gamma-glutamylaminecyclotransferase OS=Mus musculus OX=10090 GN=Ggact PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.7e-07 Identity = 45/140 (32.14%), Postives = 65/140 (46.43%), Query Frame = 0
BLAST of Carg24524-RA vs. Swiss-Prot
Match: sp|Q0VFX9|GGACT_BOVIN (Gamma-glutamylaminecyclotransferase OS=Bos taurus OX=9913 GN=GGACT PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.9e-07 Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 0
BLAST of Carg24524-RA vs. TrEMBL
Match: tr|A0A0A0LF18|A0A0A0LF18_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902210 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 1.9e-46 Identity = 94/150 (62.67%), Postives = 115/150 (76.67%), Query Frame = 0
BLAST of Carg24524-RA vs. TrEMBL
Match: tr|A0A2I4HW64|A0A2I4HW64_9ROSI (putative gamma-glutamylcyclotransferase At3g02910 OS=Juglans regia OX=51240 GN=LOC109022044 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 1.1e-35 Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = 0
BLAST of Carg24524-RA vs. TrEMBL
Match: tr|M5W8Q6|M5W8Q6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G034600 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 1.5e-35 Identity = 75/144 (52.08%), Postives = 102/144 (70.83%), Query Frame = 0
BLAST of Carg24524-RA vs. TrEMBL
Match: tr|A0A2P6PA30|A0A2P6PA30_ROSCH (Putative gamma-glutamylcyclotransferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0209861 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 9.5e-35 Identity = 79/146 (54.11%), Postives = 100/146 (68.49%), Query Frame = 0
BLAST of Carg24524-RA vs. TrEMBL
Match: tr|A0A2N9GB69|A0A2N9GB69_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24276 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 6.2e-34 Identity = 79/146 (54.11%), Postives = 101/146 (69.18%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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