Carg24531-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCTTATTTAAGGCTTCCAAGACATGCCAATCTCTGTATTGCGTATTGAATTTTCTGCGAATATTCTGTTTCTTTCTCCCTCTCTCAAGGAGTGACCCTAAAGGAAAGAAGATTGTTGTTAAAACAGATTTCAATTTCGTTTCTGTTTCTGTTTCTCTTTCTTCATCCTTTCCTCTGGGTTTTCTGTTTGTTTCCCGAGAAAACAACGGAAAGTGAAAAAGGGGATCCGGGAAAATCCTTGAGGAAAATGGAGAAGAAAGGGGAAAAGAATGTGGGCGAAAAGATGAGCAAATTTCGATTGAGTTTTTGGGATTTGGCTGTGTTTAGCACCGTTGTTATTGCCTTCCTTTTTGGCCTTCTTTGTGTTTACCTAACCATGCCGGCCTCCGATTATAGCTTTCTTAAGCTTCCTCGCAACCTTCAAGATCTTCAAATCCTCAGGTATTTCTTCTGTTCATTGCGTTTTCTTTCGATTTTGATGATGGATATTTTCGTTTCGTTCGTTTTGTGGATTCTTTTTTGTGTTTGATCGCTTGATTAGGTCATTTTTCTTGTGATTTCTGGAATTGGGTTTGGCTGTGTTCTTGTTCTTGTTCTTGTTCTTGTTCTTGGAGTGATTACCCAAGCTTTCAATGGCTTGCTCTTGAATGATTTGATTGTCTTTTGAATGGGCACTAAATACTTCTTTTAGGGAGTTTCAAATTCAAGTGTTTGTATCAGAAATATGATCAGATCTGGCACTTTCCTTGATAATGTTCTTGCGGGATTCTTATGGTTTGGCTGATGAGATTTTGGCAGCACTTTCTTGAATGTTTGTGGATATGGTTTGTGTGAGATACACGTTGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTAGGGAAACCTTTCTCTAACCGTGAGGCTGACAGCTATGCGTCACGGGGAAAAACGGACAATATCTATTAGCAATGGACTTGGGTTGTTACAAATGGTATTAAGCCACCAAGGGGAGTGGATTGTGAGATCCCACGTTGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGATGCGTTTTAAAATCGTGAGGCTGATGGTGATACGTAATGGGTCAAAGCAAACAATATTTGCTAGTGGTGGGTTTGGACTGTTACAAATGGCATTAGAGCCAGACATTGGGCCGTGTTCTAGCGAGGATGCTGGTCCTAAAGGGAGATGAATTGTGAGATCTCACGTTGGTTGGAGAGGGGAAAGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGATTGCGTTTTAAAATTGTGAGATTGATGGTGATACGTAATGGGCTAAAGCAACCAATATCTGCTAGCGGTGGGTTTGGGCCATTACAAATGGCATTAGAGCCAGACACTAGGCCGTGTGCCATCGAGGATGCTGGTCTCCAAGGGAGATGGATTGTGAGATCCCATATTGGTCGGAGAGCGGAATGAAGCATTCCTTTACAAGGGTGTGAAAACCTCTCTCTAATAGACACGTTTTAAAACCGTGAGACTAACGACAATACGTAATAGGCCAAAACAGACAATATCTACTAGCGGTGGGCTTGGGTTATTACTTATCTCGTCATCAATGTTGCTATGTAAAAGCTTGTGGATGGTTAAAATGTGGCTAGAATGTTTGGATATGGATCATTGTTTGATGAATATTCTTTCTTTTAGAGATCACCTTGAGGAATATACAAGTGACTACACTGCACAGGTCTTAGTAGGATACTGCGTTGTATACATCTTTATGCAAACCTTCATGATACCTGGAACTGTTTTCATGTCACTGCTGGCTGGAGCCCTTTTTGGGGTCTTCAAGGGCGTTGCTCTCGTTGTCTTCACCGCTACAGCCGGAGCTTCCTCTTGCTATTTCCTCTCGAAGATGATCGGGAAGCCCCTCGCCTTTACTCTTTGGCCTGACAAGGTGAAGTTCTTTCAAGATCAGGTAAGTTTCATATCCCCGTCTCTTTCGTAGTCGATTCTATAAGGTTTTTTCGATGTTGAATTGATTCCTCTCTCAGGTTTCTAGGAGAAGGGAAGGGCTGTTGAACTACATGCTTTTTCTAAGATTGACTCCGACCTTGCCAAATACATTCATCAATGTTGCATCTCCGATCGTCGATGTGCCTTACCATACCTTCTTCTTTGCTACCGTCGTTGGTCTCATCCCGGCTGCCTACGTTACAGTCAAGGTAATCACTTCTCCATTGCTGTTGTTTGTCTTTGTGTTGCTTGTAGCTCATTGTCATGGGTTTCTAGAGAGGGATGATGTGAGATCGGTTAGATAGGGGAATGAACCATTCCTTATAAGGGTGTGGAAACCTCTTCCTAGTAGACACGTTTTAAAAACTTCTGTTAGTGGTGGACTTGGTCTGTTACAAATAGTATTAGAGCTAGACATCGGTCGGTGTGCCAGCGGGATGCTGGCCCCCAAGGGAGGTGGATTGTAAGATCCCACACCGGTTGGAGAGGGAAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCCTTAATTACATAGTTCGGAAATGCAGTTAGAAGCATACTTGACATTCTTAGGTGAGTGAGTGAGAGTGAGTGAAGAACTAACGTTGATTTGGCTGTTTGCTTCTCAGCTCATATTTTGATGTTTCTAAACTGTATATTGAGTGACTCGAACATCTCGAATTGTATGACAGGCTGGGCTGACGCTCGGAGAATTGCAATCGGTTGGTGATCTTTACGACTTCAACTCGATTGCCACATTGTTTCTGATCGGAATTGTGTCGGTGACCCCGACATTAGTTGGCAAGAGTAAAGCATAGGATCCTATGGCGTAATGCTTGAGCGAATTTGCAGCCTCGTTCCTTGTACAGGTACAGTGTCATCACCCGAACAAGCCATTGAAGGTGATTATGGATCGTTTGGTTTCGAATATAATGTGGATGTCGGGTTTGGAGGGGATTGGGAGAAGGGTCAGAGTTATTAAATTTGGATAATTGTATTTGATTGACCAGAAAAATGATAAAAGGAATGATCATATTCATTTGATTCCCCAGAAAATTATAAAATGGAAGATCATATTCATTTGTG CCTTATTTAAGGCTTCCAAGACATGCCAATCTCTGTATTGCGTATTGAATTTTCTGCGAATATTCTGTTTCTTTCTCCCTCTCTCAAGGAGTGACCCTAAAGGAAAGAAGATTGTTGTTAAAACAGATTTCAATTTCGTTTCTGTTTCTGTTTCTCTTTCTTCATCCTTTCCTCTGGGTTTTCTGTTTGTTTCCCGAGAAAACAACGGAAAGTGAAAAAGGGGATCCGGGAAAATCCTTGAGGAAAATGGAGAAGAAAGGGGAAAAGAATGTGGGCGAAAAGATGAGCAAATTTCGATTGAGTTTTTGGGATTTGGCTGTGTTTAGCACCGTTGTTATTGCCTTCCTTTTTGGCCTTCTTTGTGTTTACCTAACCATGCCGGCCTCCGATTATAGCTTTCTTAAGCTTCCTCGCAACCTTCAAGATCTTCAAATCCTCAGAGATCACCTTGAGGAATATACAAGTGACTACACTGCACAGGTCTTAGTAGGATACTGCGTTGTATACATCTTTATGCAAACCTTCATGATACCTGGAACTGTTTTCATGTCACTGCTGGCTGGAGCCCTTTTTGGGGTCTTCAAGGGCGTTGCTCTCGTTGTCTTCACCGCTACAGCCGGAGCTTCCTCTTGCTATTTCCTCTCGAAGATGATCGGGAAGCCCCTCGCCTTTACTCTTTGGCCTGACAAGGTGAAGTTCTTTCAAGATCAGGTTTCTAGGAGAAGGGAAGGGCTGTTGAACTACATGCTTTTTCTAAGATTGACTCCGACCTTGCCAAATACATTCATCAATGTTGCATCTCCGATCGTCGATGTGCCTTACCATACCTTCTTCTTTGCTACCGTCGTTGGTCTCATCCCGGCTGCCTACGTTACAGCTGGGCTGACGCTCGGAGAATTGCAATCGGTTGGTGATCTTTACGACTTCAACTCGATTGCCACATTGTTTCTGATCGGAATTGTGTCGGTGACCCCGACATTAGTTGGCAAGAGTAAAGCATAGGATCCTATGGCGTAATGCTTGAGCGAATTTGCAGCCTCGTTCCTTGTACAGGTACAGTGTCATCACCCGAACAAGCCATTGAAGGTGATTATGGATCGTTTGGTTTCGAATATAATGTGGATGTCGGGTTTGGAGGGGATTGGGAGAAGGGTCAGAGTTATTAAATTTGGATAATTGTATTTGATTGACCAGAAAAATGATAAAAGGAATGATCATATTCATTTGATTCCCCAGAAAATTATAAAATGGAAGATCATATTCATTTGTG ATGGAGAAGAAAGGGGAAAAGAATGTGGGCGAAAAGATGAGCAAATTTCGATTGAGTTTTTGGGATTTGGCTGTGTTTAGCACCGTTGTTATTGCCTTCCTTTTTGGCCTTCTTTGTGTTTACCTAACCATGCCGGCCTCCGATTATAGCTTTCTTAAGCTTCCTCGCAACCTTCAAGATCTTCAAATCCTCAGAGATCACCTTGAGGAATATACAAGTGACTACACTGCACAGGTCTTAGTAGGATACTGCGTTGTATACATCTTTATGCAAACCTTCATGATACCTGGAACTGTTTTCATGTCACTGCTGGCTGGAGCCCTTTTTGGGGTCTTCAAGGGCGTTGCTCTCGTTGTCTTCACCGCTACAGCCGGAGCTTCCTCTTGCTATTTCCTCTCGAAGATGATCGGGAAGCCCCTCGCCTTTACTCTTTGGCCTGACAAGGTGAAGTTCTTTCAAGATCAGGTTTCTAGGAGAAGGGAAGGGCTGTTGAACTACATGCTTTTTCTAAGATTGACTCCGACCTTGCCAAATACATTCATCAATGTTGCATCTCCGATCGTCGATGTGCCTTACCATACCTTCTTCTTTGCTACCGTCGTTGGTCTCATCCCGGCTGCCTACGTTACAGCTGGGCTGACGCTCGGAGAATTGCAATCGGTTGGTGATCTTTACGACTTCAACTCGATTGCCACATTGTTTCTGATCGGAATTGTGTCGGTGACCCCGACATTAGTTGGCAAGAGTAAAGCATAG MEKKGEKNVGEKMSKFRLSFWDLAVFSTVVIAFLFGLLCVYLTMPASDYSFLKLPRNLQDLQILRDHLEEYTSDYTAQVLVGYCVVYIFMQTFMIPGTVFMSLLAGALFGVFKGVALVVFTATAGASSCYFLSKMIGKPLAFTLWPDKVKFFQDQVSRRREGLLNYMLFLRLTPTLPNTFINVASPIVDVPYHTFFFATVVGLIPAAYVTAGLTLGELQSVGDLYDFNSIATLFLIGIVSVTPTLVGKSKA
BLAST of Carg24531-RA vs. NCBI nr
Match: XP_022963764.1 (uncharacterized membrane protein At4g09580 [Cucurbita moschata]) HSP 1 Score: 478.4 bits (1230), Expect = 1.5e-131 Identity = 250/253 (98.81%), Postives = 251/253 (99.21%), Query Frame = 0
BLAST of Carg24531-RA vs. NCBI nr
Match: XP_023553626.1 (uncharacterized membrane protein At4g09580 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 476.5 bits (1225), Expect = 5.7e-131 Identity = 249/253 (98.42%), Postives = 250/253 (98.81%), Query Frame = 0
BLAST of Carg24531-RA vs. NCBI nr
Match: XP_022967320.1 (uncharacterized membrane protein At4g09580 [Cucurbita maxima]) HSP 1 Score: 471.5 bits (1212), Expect = 1.8e-129 Identity = 247/253 (97.63%), Postives = 249/253 (98.42%), Query Frame = 0
BLAST of Carg24531-RA vs. NCBI nr
Match: XP_004136194.1 (PREDICTED: uncharacterized membrane protein At4g09580 [Cucumis sativus] >KGN60367.1 hypothetical protein Csa_3G901130 [Cucumis sativus]) HSP 1 Score: 448.0 bits (1151), Expect = 2.2e-122 Identity = 233/253 (92.09%), Postives = 242/253 (95.65%), Query Frame = 0
BLAST of Carg24531-RA vs. NCBI nr
Match: XP_008465994.1 (PREDICTED: uncharacterized membrane protein At4g09580 [Cucumis melo]) HSP 1 Score: 445.7 bits (1145), Expect = 1.1e-121 Identity = 233/253 (92.09%), Postives = 241/253 (95.26%), Query Frame = 0
BLAST of Carg24531-RA vs. TAIR10
Match: AT4G17790.1 (SNARE associated Golgi protein family) HSP 1 Score: 370.5 bits (950), Expect = 7.9e-103 Identity = 187/238 (78.57%), Postives = 215/238 (90.34%), Query Frame = 0
BLAST of Carg24531-RA vs. TAIR10
Match: AT4G09580.1 (SNARE associated Golgi protein family) HSP 1 Score: 301.2 bits (770), Expect = 5.9e-82 Identity = 144/241 (59.75%), Postives = 194/241 (80.50%), Query Frame = 0
BLAST of Carg24531-RA vs. TAIR10
Match: AT1G71940.2 (SNARE associated Golgi protein family) HSP 1 Score: 297.4 bits (760), Expect = 8.5e-81 Identity = 145/220 (65.91%), Postives = 184/220 (83.64%), Query Frame = 0
BLAST of Carg24531-RA vs. Swiss-Prot
Match: sp|Q8L586|Y4958_ARATH (Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana OX=3702 GN=At4g09580 PE=1 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 1.1e-80 Identity = 144/241 (59.75%), Postives = 194/241 (80.50%), Query Frame = 0
BLAST of Carg24531-RA vs. Swiss-Prot
Match: sp|Q8MXN7|TM41_DICDI (Transmembrane protein 41 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0275543 PE=3 SV=2) HSP 1 Score: 183.0 bits (463), Expect = 4.2e-45 Identity = 91/199 (45.73%), Postives = 138/199 (69.35%), Query Frame = 0
BLAST of Carg24531-RA vs. Swiss-Prot
Match: sp|Q5ZIL6|TM41B_CHICK (Transmembrane protein 41B OS=Gallus gallus OX=9031 GN=TMEM41B PE=2 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 4.2e-37 Identity = 85/231 (36.80%), Postives = 136/231 (58.87%), Query Frame = 0
BLAST of Carg24531-RA vs. Swiss-Prot
Match: sp|Q5BJD5|TM41B_HUMAN (Transmembrane protein 41B OS=Homo sapiens OX=9606 GN=TMEM41B PE=1 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 4.2e-37 Identity = 85/231 (36.80%), Postives = 137/231 (59.31%), Query Frame = 0
BLAST of Carg24531-RA vs. Swiss-Prot
Match: sp|Q5U4K5|TM41B_XENLA (Transmembrane protein 41B OS=Xenopus laevis OX=8355 GN=tmem41b PE=2 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 7.2e-37 Identity = 78/199 (39.20%), Postives = 125/199 (62.81%), Query Frame = 0
BLAST of Carg24531-RA vs. TrEMBL
Match: tr|A0A0A0LI03|A0A0A0LI03_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901130 PE=4 SV=1) HSP 1 Score: 448.0 bits (1151), Expect = 1.4e-122 Identity = 233/253 (92.09%), Postives = 242/253 (95.65%), Query Frame = 0
BLAST of Carg24531-RA vs. TrEMBL
Match: tr|A0A1S3CQ67|A0A1S3CQ67_CUCME (uncharacterized membrane protein At4g09580 OS=Cucumis melo OX=3656 GN=LOC103503560 PE=4 SV=1) HSP 1 Score: 445.7 bits (1145), Expect = 7.1e-122 Identity = 233/253 (92.09%), Postives = 241/253 (95.26%), Query Frame = 0
BLAST of Carg24531-RA vs. TrEMBL
Match: tr|A0A1Q3DF89|A0A1Q3DF89_CEPFO (SNARE_assoc domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34546 PE=4 SV=1) HSP 1 Score: 396.7 bits (1018), Expect = 3.8e-107 Identity = 204/247 (82.59%), Postives = 224/247 (90.69%), Query Frame = 0
BLAST of Carg24531-RA vs. TrEMBL
Match: tr|A0A2I4G4M0|A0A2I4G4M0_9ROSI (uncharacterized membrane protein At4g09580-like OS=Juglans regia OX=51240 GN=LOC109004671 PE=4 SV=1) HSP 1 Score: 393.7 bits (1010), Expect = 3.2e-106 Identity = 203/253 (80.24%), Postives = 226/253 (89.33%), Query Frame = 0
BLAST of Carg24531-RA vs. TrEMBL
Match: tr|A0A061G6G3|A0A061G6G3_THECC (SNARE associated Golgi protein family OS=Theobroma cacao OX=3641 GN=TCM_016549 PE=4 SV=1) HSP 1 Score: 393.7 bits (1010), Expect = 3.2e-106 Identity = 201/250 (80.40%), Postives = 226/250 (90.40%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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