Carg24506-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24506-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dbj\|BAA96220.1
Location	Cucurbita_argyrosperma_scaffold_121 : 66204 .. 69698 (+)
Sequence length	725

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCTAAGAACAGTATCGCGGAAACATCGAATGCAACGGATGATCGGGTGAGTTCTTAGCTCCCTCGCTAAGTCTCTACACAGATCATGAAGTTGAACAATAATTGAATTGCGAATTCGCAAAAGTGCAATCGTCGAGGAAGGTTTGGATCATGGAGGACAAGGGCAAAGGAACGGACAGATGGAGCGGTGCCGTAGCCAATATCACGGAGATGGCCTCCAACCTAGAATCACTCCAGAAGATTTTAGTAAAGAAAGCCGTCTATGTAGACGACGAGACGTTTGCCAGAGCTTCATTGTGCTCCGAACAGGCAAGGACGATCAAGGTTACTAGAACTCGCTTTTGCATTTTTTTCCCCTTTTTTTTTTCATGTTCTGTAGTTAGGTGTTTTTAATCTGATGTCTGGATTGGAATTTCGATTTTGCTCTTTGAAATTGGGTGGAGTGAGGAATTGGTGGGATTGCCTTCGTTCGTATTAGCGATCTAAATATTAGTTTTCTTGCTATATGCTGAATCGGAGTGGTATACATGTTGATCTAGGTTGCTTAGACATCTGATATAGGGTTTGAAATTTCAATTTTCTTATGGAATGTGGAGTGGGAGAGTGATGGATTGCCCAAAGGATTAGCAGATTTGGCAGATTCAGGAAGTCATTCTCTTAATCGATCCTGTTAAGAGGCCATTTTGAATGTGGGGTCTTTGAAGAATCAAGGAGTGAATACACCTGATCTTCGAAGACCTTCTTGGAGAAATGGATGTTGTGTAGAGTAGTGAACTTTAGCCAAATGAGTGGGTGGAGATTGCCAACTCTCAGGTAAAATGTGAGTCATGCACATGATGGAGGGATATTGAGAATAGAGATACTAATGTACTCACTGGGTTGGAGGAATTCAGGATCAGTTAAAAGTGATATGAACCAAGAGACATCAATCATACAATATACTTCAATGAAGATGTGAAAAAAATGTTGTCAAAATTATCAAAAAATGTTTCAATTCATGCCACGTTGAAGAAGAATCAAGCTTCATTGTTATAGATTTGGGTGGATCATAATTTAGAGTAATTTAGAGTTATGGTGTTTTTTTAATGTATTTTAAGGCTTATTTACATAGTGGTTAATTATGGCCCTAAAGTATATATATTGGTGAATTATGGTCATAAAATATAGTTACAACTCTTGGAATGCCTAATGGAAGGTTAAAGGTTTTTATTTTGATGCTATATAAAGCTATGTATGTTATCTTTGTAAAAGAAACTTGGAAAATGTATGTAAAATGAGCATTTGTACTTTCTTTAACCAATGACTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCTTCAAGCTTGACATGATCAATCTTGCTTGTGGAGTAATTCGAATCTCAAACAAGTATTCTTGCCTTGAGATATTTGATCTACAAGAATCATTCAGGCTAGACATGATCGATCTTGTTTGTGGAGTGATTCGAATCTCAAACAAGTGTTCTTGCCTTGAGATATTCGATCAACAAGTTAATCTAAATCTTACTTCCCTTGTAGTGATCCTTATCATTTGGTATAAGAGATTTCCCTGGCGTCTTGGGTAGATTCCTTATCACTTTTGTAGGAAAATTTGTTTGCTTCTCTCTAGCATTTTATCTTTGAATACGACTTTGTTCTCGCCTTTTGAACCTGGCCGATCTTTCTTTTACTAATCTACTTCTGTTTAGATTAAAATTGTCTGGTAAATCATTTGCTTTAACATCACAACCCACCATTAAATATCAAATAGCATATCACATGAGCTTAAGTGATGCTCTTTGTTTAAATAACATGCCATTTGGCTTTTGTTTATTACGGATGTATGATACAATTTTGCCCACTGGTTATGATAATGAAATAATCTTTTGCTAGGTTCTTGAACAAAGGGTTGAGACTTTGGAAAGAGAACTTGATGCTGCTATCACTGCTGCTGCTCATGCTCGTTCAGAAAAACGTCAGGCTGAGGCAGCACAAAAAGCTGCTGAACTACATGTGCAGGAGGTCACTAGAGAGCTCGAGAACACGACAAGTATGGAATATCTTACTCTTTTCCAGCTTCTTCTTCTAATTTTCTCGACTTTTAGACCATTTTAATTTCTAAACAAAAATATTTGTTGACTTGCCTTGCCTAACCCCTAAACCCTAAAATTAATTGATTTGTTGAGCATAAATTGGAATTTTGTGTAGTGGAACCTTCAGTTTTCAATTTCGTGTTTAGTAGGTACGTGAATTTTAAAAAATATTGATTATGTTAAAGACCTATCATATACAAAATAGGACATAATATTGATAGTTGAGGGACTGATCAAATACTTTTTAAAATCCAAGGACTCAATGGACACAAGATTGAAAAGATCAGAAAGTTTATAGATCAAACGTCAAAATTTAGAGACTAAATTTATAATTAAACGTTACATAATCTAGCCTGTGATTTTTCTCTCTTTCTTTTTTTTTTTTTTTTTTTTTTTCCAACCAATCAGGACTGCTGTTGGGCTAAATAGTTTATACTAATGTTTAAAGAGGGGAAGTCGGTATTGATAAAGGAAAAGAAGTATTGTGGGTGACTTTGGTTGTATTTAGTTCTTTCTTTCCTTTCTGGAGTTCACGACTGATTGTTTGATAGCTCGCTGCATGACTTTCTCCACACATTGTCTAACCAAATCCAATGACCATCGGTGTGATTGTCTCTTATAGAAACGATAATAATAGACGGAATATTGATTAATAGGCAATTATTGTTCTTCAATAGCATAGTACCATAAGAAATCTCCACGCAGAGATGGGTGTTCTTTAAAATTACTCTGTTAATGTTATTGAATGATACTGCAGAGGTATTTCAACTGCACATGGATGAATTGCGTGCAAAGCAAGAGGAAATCAACAAGCGTGATAAGGATATCAAGCTCTTGGAAGCAATAATTCAAACTCTCGGTGGTAAAGAATAATATTTGATGGTAATTAGGGTGTTGGTATTTTTCCTTTTTCCTTATTCTGCGTGGGTGAAGTTTTAGTGTAAAATATCTATGGTTAATCTGGTTGAGTCTGATTAGGAATATGGTGCATAATATATTATTTTGAACATAGTGAAGCATTAGTTTATACAATACGAATAAGTAAAATTCAAATCACTTTTGATTGAAGAACAACGTACAAGTTATTCGCTCCCAACGTCTTTTAATTACTACGGTTTAGTTTTTGTTGATTTGTTTGTTGAAAATAGTTTTTGAGAACAAGGGCTTGTTTTAGGATTACTTTTTTTTTTATAAAAGTTCAAGTTATTGTAGGTTTTATAATCATTATTTATAACCGATCAACTATTGTAGCATAGTTAGCCAATTTCACATGCTTCAAAGTTCAACTCAACTTCAAGCAGCAAAAGGATCTTCACTGTCTGAAGAGCAGAATTTCACTTGGCTTTAAGGTTTTTTCTTCACCCTATCACTGACACTTGTTATACTAA

mRNA sequence

AAATCTAAGAACAGTATCGCGGAAACATCGAATGCAACGGATGATCGGGTGAGTTCTTAGCTCCCTCGCTAAGTCTCTACACAGATCATGAAGTTGAACAATAATTGAATTGCGAATTCGCAAAAGTGCAATCGTCGAGGAAGGTTTGGATCATGGAGGACAAGGGCAAAGGAACGGACAGATGGAGCGGTGCCGTAGCCAATATCACGGAGATGGCCTCCAACCTAGAATCACTCCAGAAGATTTTAGTAAAGAAAGCCGTCTATGTAGACGACGAGACGTTTGCCAGAGCTTCATTGTGCTCCGAACAGGCAAGGACGATCAAGGTTCTTGAACAAAGGGTTGAGACTTTGGAAAGAGAACTTGATGCTGCTATCACTGCTGCTGCTCATGCTCGTTCAGAAAAACGTCAGGCTGAGGCAGCACAAAAAGCTGCTGAACTACATGTGCAGGAGGTCACTAGAGAGCTCGAGAACACGACAAAGGTATTTCAACTGCACATGGATGAATTGCGTGCAAAGCAAGAGGAAATCAACAAGCGTGATAAGGATATCAAGCTCTTGGAAGCAATAATTCAAACTCTCGGTGCATAGTTAGCCAATTTCACATGCTTCAAAGTTCAACTCAACTTCAAGCAGCAAAAGGATCTTCACTGTCTGAAGAGCAGAATTTCACTTGGCTTTAAGGTTTTTTCTTCACCCTATCACTGACACTTGTTATACTAA

Coding sequence (CDS)

ATGGAGGACAAGGGCAAAGGAACGGACAGATGGAGCGGTGCCGTAGCCAATATCACGGAGATGGCCTCCAACCTAGAATCACTCCAGAAGATTTTAGTAAAGAAAGCCGTCTATGTAGACGACGAGACGTTTGCCAGAGCTTCATTGTGCTCCGAACAGGCAAGGACGATCAAGGTTCTTGAACAAAGGGTTGAGACTTTGGAAAGAGAACTTGATGCTGCTATCACTGCTGCTGCTCATGCTCGTTCAGAAAAACGTCAGGCTGAGGCAGCACAAAAAGCTGCTGAACTACATGTGCAGGAGGTCACTAGAGAGCTCGAGAACACGACAAAGGTATTTCAACTGCACATGGATGAATTGCGTGCAAAGCAAGAGGAAATCAACAAGCGTGATAAGGATATCAAGCTCTTGGAAGCAATAATTCAAACTCTCGGTGCATAG

Protein sequence

MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVLEQRVETLERELDAAITAAAHARSEKRQAEAAQKAAELHVQEVTRELENTTKVFQLHMDELRAKQEEINKRDKDIKLLEAIIQTLGA

Homology

[Close]

BLAST of Carg24506-RA vs. NCBI nr
Match: XP_022963476.1 (uncharacterized protein LOC111463800 isoform X2 [Cucurbita moschata] >XP_023511738.1 uncharacterized protein LOC111776508 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60
           MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL
Sbjct: 1   MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60

Query: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXINKRDKDIKLLEAIIQTLGA 147
           XXXXXXINKRDKDIKLLEAIIQTLGA
Sbjct: 121 XXXXXXINKRDKDIKLLEAIIQTLGA 146

[Close]

BLAST of Carg24506-RA vs. NCBI nr
Match: XP_022963475.1 (uncharacterized protein LOC111463800 isoform X1 [Cucurbita moschata] >XP_023511737.1 uncharacterized protein LOC111776508 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.1 bits (497), Expect = 8.6e-47
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60
           MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL
Sbjct: 1   MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60

Query: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXINKRDKDIKLLEAIIQTLG 146
           XXXXXXINKRDKDIKLLEAIIQTLG
Sbjct: 121 XXXXXXINKRDKDIKLLEAIIQTLG 145

[Close]

BLAST of Carg24506-RA vs. NCBI nr
Match: XP_022967635.1 (uncharacterized protein LOC111467076 isoform X2 [Cucurbita maxima])

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60
           MEDKGKGTDRWS AVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL
Sbjct: 1   MEDKGKGTDRWSDAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60

Query: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXINKRDKDIKLLEAIIQTLGA 147
           XXXXXXINKRDKDIKLLEAIIQTLGA
Sbjct: 121 XXXXXXINKRDKDIKLLEAIIQTLGA 146

[Close]

BLAST of Carg24506-RA vs. NCBI nr
Match: XP_022967634.1 (uncharacterized protein LOC111467076 isoform X1 [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 5.6e-46
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60
           MEDKGKGTDRWS AVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL
Sbjct: 1   MEDKGKGTDRWSDAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60

Query: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXINKRDKDIKLLEAIIQTLG 146
           XXXXXXINKRDKDIKLLEAIIQTLG
Sbjct: 121 XXXXXXINKRDKDIKLLEAIIQTLG 145

[Close]

BLAST of Carg24506-RA vs. NCBI nr
Match: XP_022142007.1 (uncharacterized protein LOC111012242 [Momordica charantia])

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60
           MEDKGKGTDRWSGAVAN+TEMASNLESLQK+L+KKAVYVDDETFA+ASLCSEQARTIKVL
Sbjct: 1   MEDKGKGTDRWSGAVANLTEMASNLESLQKLLLKKAVYVDDETFAKASLCSEQARTIKVL 60

Query: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXINKRDKDIKLLEAIIQTLGA 147
           XXXXX I+KRDKDIKLLEAIIQTLGA
Sbjct: 121 XXXXXEIDKRDKDIKLLEAIIQTLGA 146

[Close]

BLAST of Carg24506-RA vs. TAIR10
Match: AT5G64180.1 (unknown protein)

HSP 1 Score: 134.8 bits (338), Expect = 4.3e-32
Identity = 96/146 (65.75%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 1   MEDKGKGTD-RWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKV 60
           ME++  G+D RW G++ NITEMASNL+SLQK+L+KKAV+V+++TF+RASL SEQARTIKV
Sbjct: 1   MEEQFGGSDERWKGSLENITEMASNLDSLQKLLLKKAVFVEEDTFSRASLVSEQARTIKV 60

Query: 61  LEQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           LEQRV+TLERELDAAITAAAHARSE         XXXXXXXXXXXXXXX           
Sbjct: 61  LEQRVQTLERELDAAITAAAHARSEXXXXXXXXXXXXXXXXXXXXXXXXTTKVFKLHMEE 120

Query: 121 XXXXXXXINKRDKDIKLLEAIIQTLG 146
                  I+KRD +IKLLEAIIQTLG
Sbjct: 121 LRGMQEQISKRDNEIKLLEAIIQTLG 146

[Close]

BLAST of Carg24506-RA vs. TrEMBL
Match: tr|A0A1S3C1M4|A0A1S3C1M4_CUCME (uncharacterized protein LOC103495430 OS=Cucumis melo OX=3656 GN=LOC103495430 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 127/145 (87.59%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60
           MEDKGKGTDRWSGAVAN+TEM SNL+ LQK+L+KKAVYVDDETFARASLCSEQARTIKVL
Sbjct: 1   MEDKGKGTDRWSGAVANLTEMTSNLDLLQKLLLKKAVYVDDETFARASLCSEQARTIKVL 60

Query: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EQRVETLERELDAAITAAAHARSEKRQAEAA  XXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAXXXXXXXXXXXXXXXXXXXXXXXXXMDEL 120

Query: 121 XXXXXXINKRDKDIKLLEAIIQTLG 146
                 INKRDKDIKLLEAIIQTLG
Sbjct: 121 RAKQEEINKRDKDIKLLEAIIQTLG 145

[Close]

BLAST of Carg24506-RA vs. TrEMBL
Match: tr|A0A0A0K2J2|A0A0A0K2J2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062790 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 9.4e-42
Identity = 128/145 (88.28%), Postives = 133/145 (91.72%), Query Frame = 0


Query: 1   MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60
           MEDKGKGTDRWSGAVAN+TEM SNL+SLQK+L+KKAVYVDDETFARASLCSEQARTIKVL
Sbjct: 1   MEDKGKGTDRWSGAVANLTEMTSNLDSLQKLLLKKAVYVDDETFARASLCSEQARTIKVL 60

Query: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EQRVETLERELDAAIT+AAHARSEKRQA     XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  EQRVETLERELDAAITSAAHARSEKRQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXINKRDKDIKLLEAIIQTLG 146
                 INKRDKDIKLLEAIIQTLG
Sbjct: 121 RAKQEEINKRDKDIKLLEAIIQTLG 145

[Close]

BLAST of Carg24506-RA vs. TrEMBL
Match: tr|A0A2I4GGG4|A0A2I4GGG4_9ROSI (uncharacterized protein LOC109007675 OS=Juglans regia OX=51240 GN=LOC109007675 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.4e-39
Identity = 125/144 (86.81%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 2   EDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVLE 61
           E+K KG++RW+GA+ N+TEMASNLESLQK+L+KK+V+VD+ETFA+ASL SEQARTIKVLE
Sbjct: 4   EEKSKGSERWTGAITNLTEMASNLESLQKLLLKKSVFVDEETFAKASLSSEQARTIKVLE 63

Query: 62  QRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121
           QRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 64  QRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 123

Query: 122 XXXXXINKRDKDIKLLEAIIQTLG 146
           XX   I+KRDKDIKLLEAIIQTLG
Sbjct: 124 XXQDEISKRDKDIKLLEAIIQTLG 147

[Close]

BLAST of Carg24506-RA vs. TrEMBL
Match: tr|M5VXG1|M5VXG1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G061800 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.4e-39
Identity = 116/145 (80.00%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60
           MEDKGKG +RW+GA++N+TEM+ NLESLQK+L+KKAV+VD+ETFA+ASLCSEQARTIKVL
Sbjct: 1   MEDKGKGNERWNGAISNLTEMSFNLESLQKLLLKKAVFVDEETFAKASLCSEQARTIKVL 60

Query: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EQRVETLERELDAAITAAA  RSEKRQAEAA+K          XXXXXXXXXXXXXXXXX
Sbjct: 61  EQRVETLERELDAAITAAARVRSEKRQAEAAEKAAELHAQEVTXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXINKRDKDIKLLEAIIQTLG 146
           XXXXX I KRDK+IKLLEAIIQTLG
Sbjct: 121 XXXXXEIAKRDKEIKLLEAIIQTLG 145

[Close]

BLAST of Carg24506-RA vs. TrEMBL
Match: tr|A0A251MU07|A0A251MU07_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G061800 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.4e-39
Identity = 116/145 (80.00%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MEDKGKGTDRWSGAVANITEMASNLESLQKILVKKAVYVDDETFARASLCSEQARTIKVL 60
           MEDKGKG +RW+GA++N+TEM+ NLESLQK+L+KKAV+VD+ETFA+ASLCSEQARTIKVL
Sbjct: 1   MEDKGKGNERWNGAISNLTEMSFNLESLQKLLLKKAVFVDEETFAKASLCSEQARTIKVL 60

Query: 61  EQRVETLERELDAAITAAAHARSEKRQAEAAQKXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           EQRVETLERELDAAITAAA  RSEKRQAEAA+K          XXXXXXXXXXXXXXXXX
Sbjct: 61  EQRVETLERELDAAITAAARVRSEKRQAEAAEKAAELHAQEVTXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXINKRDKDIKLLEAIIQTLG 146
           XXXXX I KRDK+IKLLEAIIQTLG
Sbjct: 121 XXXXXEIAKRDKEIKLLEAIIQTLG 145

The following BLAST results are available for this feature:

BLAST of Carg24506-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963476.1	2.9e-47	100.00	uncharacterized protein LOC111463800 isoform X2 [Cucurbita moschata] >XP_0235117...	[more]
XP_022963475.1	8.6e-47	100.00	uncharacterized protein LOC111463800 isoform X1 [Cucurbita moschata] >XP_0235117...	[more]
XP_022967635.1	1.9e-46	99.32	uncharacterized protein LOC111467076 isoform X2 [Cucurbita maxima]	[more]
XP_022967634.1	5.6e-46	99.31	uncharacterized protein LOC111467076 isoform X1 [Cucurbita maxima]	[more]
XP_022142007.1	1.6e-45	95.89	uncharacterized protein LOC111012242 [Momordica charantia]	[more]

BLAST of Carg24506-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64180.1	4.3e-32	65.75	unknown protein	[more]

BLAST of Carg24506-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24506-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1M4\|A0A1S3C1M4_CUCME	2.9e-43	87.59	uncharacterized protein LOC103495430 OS=Cucumis melo OX=3656 GN=LOC103495430 PE=...	[more]
tr\|A0A0A0K2J2\|A0A0A0K2J2_CUCSA	9.4e-42	88.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062790 PE=4 SV=1	[more]
tr\|A0A2I4GGG4\|A0A2I4GGG4_9ROSI	4.4e-39	86.81	uncharacterized protein LOC109007675 OS=Juglans regia OX=51240 GN=LOC109007675 P...	[more]
tr\|M5VXG1\|M5VXG1_PRUPE	7.4e-39	80.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G061800 PE=4 SV=1	[more]
tr\|A0A251MU07\|A0A251MU07_PRUPE	7.4e-39	80.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G061800 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24506	Carg24506	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24506-RA	Carg24506-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24506-RA.exon.1	Carg24506-RA.exon.1	exon
Carg24506-RA.exon.2	Carg24506-RA.exon.2	exon
Carg24506-RA.exon.3	Carg24506-RA.exon.3	exon
Carg24506-RA.exon.4	Carg24506-RA.exon.4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24506-RA.five_prime_UTR.1	Carg24506-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24506-RA.CDS.1	Carg24506-RA.CDS.1	CDS
Carg24506-RA.CDS.2	Carg24506-RA.CDS.2	CDS
Carg24506-RA.CDS.3	Carg24506-RA.CDS.3	CDS
Carg24506-RA.CDS.4	Carg24506-RA.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24506-RA.three_prime_UTR.1	Carg24506-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 50..105
None	No IPR available	PANTHER	PTHR36080:SF1	DBJ\|BAA96220.1	coord: 3..145
None	No IPR available	PANTHER	PTHR36080	FAMILY NOT NAMED	coord: 3..145