Carg27542 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGGCTCTCCAAAATGGGTTTCTCTTGGTTTTCTTGTAATTTGCATTGTGCTCCATTTGAGTGCTCTTGCTCTAGCTGATAACAAGCTTGAAAAGAGTAGGTTTAGGGATGATGATTGTTGGGGCCGACGTTGCGGTGGCAGATATGGAGGTCGTGGACCGCGATATGGTAGGGGAGGTGGTTTTGGAGGCGGTAGAGGAGGTGGGTTTGGTGGTGGTAGAGGGGGTGGATCGGGTGGAGGGTTTGGAGGCGGCGGTGGAGTAGGTGGCGGTGTTGGAGGAGGAGGTGGAGTGGGAGGTGGTTCTGGACATGGTGGAGGGTTTGGAGCTGGAGGTGGCGTTGGTGGAGGTGCAGGAGGAGGTGGCGGTGGAGGAGGTGGTGGCGGCGGAAATGGTGGTGGGTCTGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTATAGGTAGTGGCGCTGGCGGAGGTGGAGGCGGAGGTGGAGGTGGAGGTGGCGGAGGAAGTGGCAGTGGGTCGGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTGTGGGTAGTGGGGCTGGCGGAGGCGGAGGCGGTGGTGGTGGTGGAGGAGGTGGCGGAGGAAGTGGTGGTGGGTCAGGCCATGGTGGAGGCTTTGGAGTTGGTGGAGGTGTAGGTAGTGGGGCTGGCGGAGGAGGAGGCGGAGGTGGAGGCGGAGGCGGTGGTGGTGGTGGTCTAGGCGGAGGTTCAGGTCATGGAGGTGGATTTGGAGCCGGCGGAGGAGCTGGATCCGGAGGAGGTTTAGGGCATGGCGGCAGTGGTGGTCACAGCGGAGGATTTGGAATAGGAATAGGGATTGGAATAGGAGTTGGTAGCGGATCAGGTCGCGGCGTCGGCGTTGGCTCCGGGTCCAGTGGAGGAGGTGGTGGTCGTCGTTAA ATGGGTGGCTCTCCAAAATGGGTTTCTCTTGGTTTTCTTGTAATTTGCATTGTGCTCCATTTGAGTGCTCTTGCTCTAGCTGATAACAAGCTTGAAAAGAGTAGGTTTAGGGATGATGATTGTTGGGGCCGACGTTGCGGTGGCAGATATGGAGGTCGTGGACCGCGATATGGTAGGGGAGGTGGTTTTGGAGGCGGTAGAGGAGGTGGGTTTGGTGGTGGTAGAGGGGGTGGATCGGGTGGAGGGTTTGGAGGCGGCGGTGGAGTAGGTGGCGGTGTTGGAGGAGGAGGTGGAGTGGGAGGTGGTTCTGGACATGGTGGAGGGTTTGGAGCTGGAGGTGGCGTTGGTGGAGGTGCAGGAGGAGGTGGCGGTGGAGGAGGTGGTGGCGGCGGAAATGGTGGTGGGTCTGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTATAGGTAGTGGCGCTGGCGGAGGTGGAGGCGGAGGTGGAGGTGGAGGTGGCGGAGGAAGTGGCAGTGGGTCGGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTGTGGGTAGTGGGGCTGGCGGAGGCGGAGGCGGTGGTGGTGGTGGAGGAGGTGGCGGAGGAAGTGGTGGTGGGTCAGGCCATGGTGGAGGCTTTGGAGTTGGTGGAGGTGTAGGTAGTGGGGCTGGCGGAGGAGGAGGCGGAGGTGGAGGCGGAGGCGGTGGTGGTGGTGGTCTAGGCGGAGGTTCAGGTCATGGAGGTGGATTTGGAGCCGGCGGAGGAGCTGGATCCGGAGGAGGTTTAGGGCATGGCGGCAGTGGTGGTCACAGCGGAGGATTTGGAATAGGAATAGGGATTGGAATAGGAGTTGGTAGCGGATCAGGTCGCGGCGTCGGCGTTGGCTCCGGGTCCAGTGGAGGAGGTGGTGGTCGTCGTTAA ATGGGTGGCTCTCCAAAATGGGTTTCTCTTGGTTTTCTTGTAATTTGCATTGTGCTCCATTTGAGTGCTCTTGCTCTAGCTGATAACAAGCTTGAAAAGAGTAGGTTTAGGGATGATGATTGTTGGGGCCGACGTTGCGGTGGCAGATATGGAGGTCGTGGACCGCGATATGGTAGGGGAGGTGGTTTTGGAGGCGGTAGAGGAGGTGGGTTTGGTGGTGGTAGAGGGGGTGGATCGGGTGGAGGGTTTGGAGGCGGCGGTGGAGTAGGTGGCGGTGTTGGAGGAGGAGGTGGAGTGGGAGGTGGTTCTGGACATGGTGGAGGGTTTGGAGCTGGAGGTGGCGTTGGTGGAGGTGCAGGAGGAGGTGGCGGTGGAGGAGGTGGTGGCGGCGGAAATGGTGGTGGGTCTGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTATAGGTAGTGGCGCTGGCGGAGGTGGAGGCGGAGGTGGAGGTGGAGGTGGCGGAGGAAGTGGCAGTGGGTCGGGCCATGGTGGAGGCTTTGGAGCTGGTGGAGGTGTGGGTAGTGGGGCTGGCGGAGGCGGAGGCGGTGGTGGTGGTGGAGGAGGTGGCGGAGGAAGTGGTGGTGGGTCAGGCCATGGTGGAGGCTTTGGAGTTGGTGGAGGTGTAGGTAGTGGGGCTGGCGGAGGAGGAGGCGGAGGTGGAGGCGGAGGCGGTGGTGGTGGTGGTCTAGGCGGAGGTTCAGGTCATGGAGGTGGATTTGGAGCCGGCGGAGGAGCTGGATCCGGAGGAGGTTTAGGGCATGGCGGCAGTGGTGGTCACAGCGGAGGATTTGGAATAGGAATAGGGATTGGAATAGGAGTTGGTAGCGGATCAGGTCGCGGCGTCGGCGTTGGCTCCGGGTCCAGTGGAGGAGGTGGTGGTCGTCGTTAA MGGSPKWVSLGFLVICIVLHLSALALADNKLEKSRFRDDDCWGRRCGGRYGGRGPRYGRGGGFGGGRGGGFGGGRGGGSGGGFGGGGGVGGGVGGGGGVGGGSGHGGGFGAGGGVGGGAGGGGGGGGGGGGNGGGSGHGGGFGAGGGIGSGAGGGGGGGGGGGGGGSGSGSGHGGGFGAGGGVGSGAGGGGGGGGGGGGGGGSGGGSGHGGGFGVGGGVGSGAGGGGGGGGGGGGGGGGLGGGSGHGGGFGAGGGAGSGGGLGHGGSGGHSGGFGIGIGIGIGVGSGSGRGVGVGSGSSGGGGGRR
BLAST of Carg27542 vs. NCBI nr
Match: XP_023530328.1 (glycine-rich cell wall structural protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 101.7 bits (252), Expect = 4.6e-18 Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0
BLAST of Carg27542 vs. NCBI nr
Match: XP_022989506.1 (glycine-rich cell wall structural protein 1-like [Cucurbita maxima]) HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17 Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0
BLAST of Carg27542 vs. NCBI nr
Match: XP_023511646.1 (glycine-rich cell wall structural protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 90.1 bits (222), Expect = 1.4e-14 Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0
BLAST of Carg27542 vs. NCBI nr
Match: XP_015877725.1 (glycine-rich cell wall structural protein 1-like [Ziziphus jujuba]) HSP 1 Score: 71.6 bits (174), Expect = 5.1e-09 Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0
BLAST of Carg27542 vs. NCBI nr
Match: XP_011659702.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus] >KGN43514.1 hypothetical protein Csa_7G043560 [Cucumis sativus]) HSP 1 Score: 71.2 bits (173), Expect = 6.7e-09 Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0
BLAST of Carg27542 vs. TrEMBL
Match: tr|A0A1S4E0F3|A0A1S4E0F3_CUCME (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC107991344 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09 Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0
BLAST of Carg27542 vs. TrEMBL
Match: tr|A0A0A0K3J8|A0A0A0K3J8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G043560 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 4.4e-09 Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0
BLAST of Carg27542 vs. TrEMBL
Match: tr|A0A2I4GX66|A0A2I4GX66_9ROSI (glycine-rich cell wall structural protein 1-like OS=Juglans regia OX=51240 GN=LOC109011653 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 2.1e-06 Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0
BLAST of Carg27542 vs. TrEMBL
Match: tr|A0A2P6S259|A0A2P6S259_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0158961 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 2.7e-06 Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0
BLAST of Carg27542 vs. TrEMBL
Match: tr|A0A2P5CMG0|A0A2P5CMG0_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_279950 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 7.8e-06 Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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