Carg12857 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12857
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_043 : 758609 .. 759873 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTTTCTCTCGACCCCATGTCTGATAAATTATCTGTGACTTGAAGATGAGATTTTCTGGTTTCCATGATTGGATGAAGGTATGAAGAGCCTTGTAGTGATGAGCTAGGTGGAAGAACTAGTTCAGAATGGAAAAATAACCCAGTTTGCTCGGAACACACTGCTGAATTGGCCTGTATCGACTCAGACGACAGCCTTCGAAACTCTTTCTGCTGTCTCAACTCTTTAGCTTTCTGCAATCGTCTAAATCTCTCCTGCAGCAAGGCAATGGAGGAGTTCATTGCCCTGGCATTACAGTTTTCATTACTCATTCTCAAAGAAAAAGGAGGAAAAAAAAAACCAATCTCCTACACTTCGTGCTTCCTTCGTGCTTCGCCGAAGAGCCTGTCAGGTATCTCTTTGACCAATATTTGAGTATCTGTATCTCTATTTATAGGACATGGGTAGGTGATTTCTTGAACGTTAATAGATGCATTAGTTAAGTTTAAGCTTTCGATTAGATTTTGAATCACGAAAATAAAGGGAAGAAGCAGGTGCCAAGATGGAAAGGCCAAGTAGAACTGGCCAGGAGCAAAGCTGAGTTTTGGTTGTTGGATGTGAAGAAGGCAGAGGCTTCCAAAGAGAGAGATGGATTGAGAGGCAGGAATGTAGCTTTTGTAGGCGTTTGTTGAGTTCAATTATTGGATTATGATTTCTAGTCTGTTTGTCTGAGGGGCTGCGCTGTGCCTTTTCAAAGGGATTTTGCTTTGAATGTACCTTTCTCTTTTTTTTCTCTTTTCTTTTGAATTAGAACTCAACATGTGCAATACACAATGGTGGTAAATGTATCATTTTGGGGTTCTTTTGGTGTTCTCTCTTTTTTATGTATAGTTAACATATAGATCCGTTCTTGAAATTTCGTTCCTTCAACGAAATCTTTGACATTTTGTTGATCTATATGACAAATGAATATCTATCTACATTTGAGCGTGTTTGAGATCATATATCAAGATGTTTGTTCGATCTGTTTAATGCTTTATATTCAGAGTTTAGAGACTAGGATAGAAACCAAAGAAACCAAAGTCAAATGAAAAGAGAAAAAGAGAAATTATTGCTATTGAAGATTGATTCTCGATTATTGCTATTGAAGATTGATTCTCGAACTGGGACAAGTAACTAAATAGAATATTTTTCAATACCATAATACAGATTTTTCTTTAAAACAAAAGAACCCTACCATCATGGATGAGTATCACTCTCATATGGCGTACTACTCAAGATAA

mRNA sequence

ATGACTGTTTCTCTCGACCCCATGTATGAAGAGCCTTGTAGTGATGAGCTAGGTGGAAGAACTAGTTCAGAATGGAAAAATAACCCAGTTTGCTCGGAACACACTGCTGAATTGGCCTGTATCGACTCAGACGACAGCCTTCGAAACTCTTTCTGCTGTCTCAACTCTTTAGCTTTCTGCAATCGTCTAAATCTCTCCTGCAGCAAGGCAATGGAGGAGTTCATTGCCCTGGCATTACAGTTTTCATTACTCATTCTCAAAGAAAAAGGAGGAAAAAAAAAACCAATCTCCTACACTTCGTGCTTCCTTCGTGCTTCGCCGAAGAGCCTGTCAGGGAAGAAGCAGGTGCCAAGATGGAAAGGCCAAGTAGAACTGGCCAGGAGCAAAGCTGAGTTTTGGTTGTTGGATGTGAAGAAGGCAGAGGCTTCCAAAGAGAGAGATGGATTGAGAGGCAGGAATAACTCAACATGTGCAATACACAATGGTGATTTTTCTTTAAAACAAAAGAACCCTACCATCATGGATGAGTATCACTCTCATATGGCGTACTACTCAAGATAA

Coding sequence (CDS)

ATGACTGTTTCTCTCGACCCCATGTATGAAGAGCCTTGTAGTGATGAGCTAGGTGGAAGAACTAGTTCAGAATGGAAAAATAACCCAGTTTGCTCGGAACACACTGCTGAATTGGCCTGTATCGACTCAGACGACAGCCTTCGAAACTCTTTCTGCTGTCTCAACTCTTTAGCTTTCTGCAATCGTCTAAATCTCTCCTGCAGCAAGGCAATGGAGGAGTTCATTGCCCTGGCATTACAGTTTTCATTACTCATTCTCAAAGAAAAAGGAGGAAAAAAAAAACCAATCTCCTACACTTCGTGCTTCCTTCGTGCTTCGCCGAAGAGCCTGTCAGGGAAGAAGCAGGTGCCAAGATGGAAAGGCCAAGTAGAACTGGCCAGGAGCAAAGCTGAGTTTTGGTTGTTGGATGTGAAGAAGGCAGAGGCTTCCAAAGAGAGAGATGGATTGAGAGGCAGGAATAACTCAACATGTGCAATACACAATGGTGATTTTTCTTTAAAACAAAAGAACCCTACCATCATGGATGAGTATCACTCTCATATGGCGTACTACTCAAGATAA

Protein sequence

MTVSLDPMYEEPCSDELGGRTSSEWKNNPVCSEHTAELACIDSDDSLRNSFCCLNSLAFCNRLNLSCSKAMEEFIALALQFSLLILKEKGGKKKPISYTSCFLRASPKSLSGKKQVPRWKGQVELARSKAEFWLLDVKKAEASKERDGLRGRNNSTCAIHNGDFSLKQKNPTIMDEYHSHMAYYSR

Homology

[Close]

BLAST of Carg12857 vs. NCBI nr
Match: KGN59104.1 (hypothetical protein Csa_3G769690 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 6.1e-13
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 112 GKKQVPRWKGQVELARSKAEFWLLDVKKAEASKERDGLRGRN 154
           GKKQVPRWKGQVE+ARSKAEFWLLDVKKAE SKER+GLRGRN
Sbjct: 22  GKKQVPRWKGQVEMARSKAEFWLLDVKKAETSKEREGLRGRN 63

[Close]

BLAST of Carg12857 vs. TrEMBL
Match: tr|A0A0A0LDZ2|A0A0A0LDZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769690 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-13
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 112 GKKQVPRWKGQVELARSKAEFWLLDVKKAEASKERDGLRGRN 154
           GKKQVPRWKGQVE+ARSKAEFWLLDVKKAE SKER+GLRGRN
Sbjct: 22  GKKQVPRWKGQVEMARSKAEFWLLDVKKAETSKEREGLRGRN 63

The following BLAST results are available for this feature:

BLAST of Carg12857 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59104.1	6.1e-13	92.86	hypothetical protein Csa_3G769690 [Cucumis sativus]	[more]

BLAST of Carg12857 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg12857 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12857 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LDZ2\|A0A0A0LDZ2_CUCSA	4.0e-13	92.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769690 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12857-RA	Carg12857-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12857	Csa3G769690	Cucumber (Chinese Long) v2	carcuB0919
Carg12857	CsaV3_7G018530	Cucumber (Chinese Long) v3	carcucB0946

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12857	Cucumber (Gy14) v1	carcgyB1024
Carg12857	Cucurbita maxima (Rimu)	carcmaB1240
Carg12857	Cucurbita maxima (Rimu)	carcmaB1245
Carg12857	Cucurbita moschata (Rifu)	carcmoB1211
Carg12857	Cucurbita moschata (Rifu)	carcmoB1215
Carg12857	Cucurbita pepo (Zucchini)	carcpeB1254
Carg12857	Cucurbita pepo (Zucchini)	carcpeB1255
Carg12857	Wild cucumber (PI 183967)	carcpiB0940
Carg12857	Cucumber (Chinese Long) v2	carcuB0924
Carg12857	Bottle gourd (USVL1VR-Ls)	carlsiB823
Carg12857	Melon (DHL92) v3.5.1	carmeB0889
Carg12857	Melon (DHL92) v3.6.1	carmedB0897
Carg12857	Watermelon (Charleston Gray)	carwcgB0878
Carg12857	Watermelon (97103) v1	carwmB0903
Carg12857	Watermelon (97103) v2	carwmbB0949
Carg12857	Wax gourd	carwgoB1048
Carg12857	Silver-seed gourd	carcarB638
Carg12857	Cucumber (Gy14) v2	carcgybB0896