Carg19236 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCAAGCCCAAGAGAATTTGCTTGCTTCTATTAAGGCTTCTTGCTTTGGGCTCGACTCTTTCAGCTGCCATTGTTATGGCCGCAAGTCATGAAGAAGCCAGGTTTTTTAGCCTGTCTTTTGAAGCCAAATACACTCATACACCAGCCTTCAAGTGAGATTCCATCTCTTTTTCTTGTGTTCTTGGATTATGGGTCATTTTTTTCCTTTCTGAATCGAGTTTTTTTGTTGTTGTTCTTGAGGTACTTTGTGATTGCAAATGCTATTGCGAGTGTTTATGGGTTTTTCGTGCTGTTTCTTCCGGCGGAGAGCTTGCTCTGGCGATTAGTGCTCTGTTTCGATGCGGTAACTCTCAAAACAGGGGACCCTTTTCTTCTTCCACTCTGTTTCGATGGCTAATTTGACGCTATTTTTGAAGTAGATATTGACGATGCTGCTGACTTCGAGCATCGCGGCGGCGTTGGCGGTGGCGCAAATAGGAAAGAATGGGAATTCATACGCCGGATGGCTTCCAATATGCGACCAAGTGGCAAGTTATTGTAGGCAAGTCAGTGGAGCTCTGGCTTTAGGCCTCCTTGGACTCCTTGTTTACCTCTTGCTTCTTCTCTATTCTCTTCACTCTCTTTTGGACCCTCTTCTTTTGAAAAAGACTTAACACAAACCACACACAATTTTCAACTTGGTCTGTCTTTAGGCCATGTTTTGTAAAAGGGTTAGCCCTTTTCGAGCTTTTTC ATGGGCAAGCCCAAGAGAATTTGCTTGCTTCTATTAAGGCTTCTTGCTTTGGGCTCGACTCTTTCAGCTGCCATTGTTATGGCCGCAAGTCATGAAGAAGCCAGGTTTTTTAGCCTGTCTTTTGAAGCCAAATACACTCATACACCAGCCTTCAAGTACTTTGTGATTGCAAATGCTATTGCGAGTGTTTATGGGTTTTTCGTGCTGTTTCTTCCGGCGGAGAGCTTGCTCTGGCGATTAGTGCTCTGTTTCGATGCGATATTGACGATGCTGCTGACTTCGAGCATCGCGGCGGCGTTGGCGGTGGCGCAAATAGGAAAGAATGGGAATTCATACGCCGGATGGCTTCCAATATGCGACCAAGTGGCAAGTTATTGTAGGCAAGTCAGTGGAGCTCTGGCTTTAGGCCTCCTTGGACTCCTTGTTTACCTCTTGCTTCTTCTCTATTCTCTTCACTCTCTTTTGGACCCTCTTCTTTTGAAAAAGACTTAACACAAACCACACACAATTTTCAACTTGGTCTGTCTTTAGGCCATGTTTTGTAAAAGGGTTAGCCCTTTTCGAGCTTTTTC ATGGGCAAGCCCAAGAGAATTTGCTTGCTTCTATTAAGGCTTCTTGCTTTGGGCTCGACTCTTTCAGCTGCCATTGTTATGGCCGCAAGTCATGAAGAAGCCAGGTTTTTTAGCCTGTCTTTTGAAGCCAAATACACTCATACACCAGCCTTCAAGTACTTTGTGATTGCAAATGCTATTGCGAGTGTTTATGGGTTTTTCGTGCTGTTTCTTCCGGCGGAGAGCTTGCTCTGGCGATTAGTGCTCTGTTTCGATGCGATATTGACGATGCTGCTGACTTCGAGCATCGCGGCGGCGTTGGCGGTGGCGCAAATAGGAAAGAATGGGAATTCATACGCCGGATGGCTTCCAATATGCGACCAAGTGGCAAGTTATTGTAGGCAAGTCAGTGGAGCTCTGGCTTTAGGCCTCCTTGGACTCCTTGTTTACCTCTTGCTTCTTCTCTATTCTCTTCACTCTCTTTTGGACCCTCTTCTTTTGAAAAAGACTTAA MGKPKRICLLLLRLLALGSTLSAAIVMAASHEEARFFSLSFEAKYTHTPAFKYFVIANAIASVYGFFVLFLPAESLLWRLVLCFDAILTMLLTSSIAAALAVAQIGKNGNSYAGWLPICDQVASYCRQVSGALALGLLGLLVYLLLLLYSLHSLLDPLLLKKT
BLAST of Carg19236 vs. NCBI nr
Match: XP_023554623.1 (LOW QUALITY PROTEIN: CASP-like protein 1C1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 267.3 bits (682), Expect = 3.4e-68 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of Carg19236 vs. NCBI nr
Match: XP_022969278.1 (CASP-like protein 1C1 [Cucurbita maxima]) HSP 1 Score: 265.8 bits (678), Expect = 9.8e-68 Identity = 145/163 (88.96%), Postives = 145/163 (88.96%), Query Frame = 0
BLAST of Carg19236 vs. NCBI nr
Match: XP_022952801.1 (CASP-like protein 1C1 [Cucurbita moschata]) HSP 1 Score: 263.8 bits (673), Expect = 3.7e-67 Identity = 144/163 (88.34%), Postives = 145/163 (88.96%), Query Frame = 0
BLAST of Carg19236 vs. NCBI nr
Match: XP_008455324.1 (PREDICTED: CASP-like protein 1C1 [Cucumis melo]) HSP 1 Score: 243.8 bits (621), Expect = 4.0e-61 Identity = 146/162 (90.12%), Postives = 156/162 (96.30%), Query Frame = 0
BLAST of Carg19236 vs. NCBI nr
Match: XP_004137023.1 (PREDICTED: CASP-like protein 1C1 [Cucumis sativus]) HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60 Identity = 144/162 (88.89%), Postives = 154/162 (95.06%), Query Frame = 0
BLAST of Carg19236 vs. TAIR10
Match: AT4G03540.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 159.5 bits (402), Expect = 1.8e-39 Identity = 88/159 (55.35%), Postives = 108/159 (67.92%), Query Frame = 0
BLAST of Carg19236 vs. TAIR10
Match: AT1G03700.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 144.8 bits (364), Expect = 4.6e-35 Identity = 81/159 (50.94%), Postives = 104/159 (65.41%), Query Frame = 0
BLAST of Carg19236 vs. TAIR10
Match: AT5G44550.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 80.1 bits (196), Expect = 1.4e-15 Identity = 60/148 (40.54%), Postives = 84/148 (56.76%), Query Frame = 0
BLAST of Carg19236 vs. TAIR10
Match: AT5G15290.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 76.3 bits (186), Expect = 2.0e-14 Identity = 49/140 (35.00%), Postives = 80/140 (57.14%), Query Frame = 0
BLAST of Carg19236 vs. TAIR10
Match: AT2G36100.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 74.3 bits (181), Expect = 7.6e-14 Identity = 54/134 (40.30%), Postives = 74/134 (55.22%), Query Frame = 0
BLAST of Carg19236 vs. Swiss-Prot
Match: sp|B9N2D0|CSPLK_POPTR (CASP-like protein 1C2 OS=Populus trichocarpa OX=3694 GN=POPTR_0019s13170g PE=2 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 1.6e-45 Identity = 100/161 (62.11%), Postives = 117/161 (72.67%), Query Frame = 0
BLAST of Carg19236 vs. Swiss-Prot
Match: sp|B9N5U6|CSPL4_POPTR (CASP-like protein 1C3 OS=Populus trichocarpa OX=3694 GN=POPTR_0013s13520g PE=3 SV=2) HSP 1 Score: 181.4 bits (459), Expect = 8.0e-45 Identity = 93/136 (68.38%), Postives = 110/136 (80.88%), Query Frame = 0
BLAST of Carg19236 vs. Swiss-Prot
Match: sp|B9RW00|CSPL6_RICCO (CASP-like protein 1C1 OS=Ricinus communis OX=3988 GN=RCOM_1174750 PE=2 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 1.8e-44 Identity = 97/163 (59.51%), Postives = 117/163 (71.78%), Query Frame = 0
BLAST of Carg19236 vs. Swiss-Prot
Match: sp|A7PJ32|CSPL2_VITVI (CASP-like protein 1C2 OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03760 PE=2 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 9.8e-43 Identity = 89/131 (67.94%), Postives = 104/131 (79.39%), Query Frame = 0
BLAST of Carg19236 vs. Swiss-Prot
Match: sp|D7M2M8|CSPLF_ARALL (CASP-like protein 1C1 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_327471 PE=3 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 8.6e-39 Identity = 89/159 (55.97%), Postives = 109/159 (68.55%), Query Frame = 0
BLAST of Carg19236 vs. TrEMBL
Match: tr|A0A1S3C0T2|A0A1S3C0T2_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103495515 PE=3 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 2.7e-61 Identity = 146/162 (90.12%), Postives = 156/162 (96.30%), Query Frame = 0
BLAST of Carg19236 vs. TrEMBL
Match: tr|A0A0A0K3S1|A0A0A0K3S1_CUCSA (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G047980 PE=3 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 7.7e-61 Identity = 144/162 (88.89%), Postives = 154/162 (95.06%), Query Frame = 0
BLAST of Carg19236 vs. TrEMBL
Match: tr|A0A199UCP8|A0A199UCP8_MANES (CASP-like protein OS=Manihot esculenta OX=3983 GN=MANES_S000500 PE=3 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 1.3e-47 Identity = 105/163 (64.42%), Postives = 125/163 (76.69%), Query Frame = 0
BLAST of Carg19236 vs. TrEMBL
Match: tr|W9SF46|W9SF46_9ROSA (CASP-like protein OS=Morus notabilis OX=981085 GN=L484_009820 PE=3 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 3.1e-46 Identity = 104/163 (63.80%), Postives = 120/163 (73.62%), Query Frame = 0
BLAST of Carg19236 vs. TrEMBL
Match: tr|A0A2I4FJI4|A0A2I4FJI4_9ROSI (CASP-like protein OS=Juglans regia OX=51240 GN=LOC108999364 PE=3 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 5.9e-45 Identity = 99/136 (72.79%), Postives = 114/136 (83.82%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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