Carg22169-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATCAACTGGTTGGGATCTCGGAGAATCACAGAAAACAGAGCGAAAATGGAGTCTCTGATTTTGGTTCCATCTAGTAGGCACGTTTCAATCACTAATTCTTCTGCGTTTTCCTCCGATTTTTCGGTTCAATTCACTTCTAGAAAGCGCGCCATCAACTTCCGAGCTTCTTCTCCGCTGATTCTCCCTTGCAATGTCTTTCTGGACCGATTAACTCCGAGGTCTTATATTCGGTACGGACCACCGTATGGTGATCAAGATGACGATCCTGAAGAGCAGGTTGAAAGCCTCAGGGTTCCTGATGCTTGGTCGGTTCCTTCCAAGGCATTGGAGGTATTGCTTTCTGGTCTTATTGATTTTTTGTTTGATTAGGTTCGTTTTGCAATCTTGAACGTGTTGATTAACTTTGTTCGTAACAATGGCGCATTTTCGATGTTTAGAACTGGTGACTGGTGTGTTGACATTGTTATCCATGTGATATTTTAGCAGAAATTTGATATTCTCCTCTTGAATTTTGTGTTGCTATGAATTTCAGTGGGATGAGTAATGTTCTCCCGCAGTCTCGGGCAATGGCTTATGATCCAAGCCATGGAGCTAGTCTGTTAGTGAAGATATCGGAGTTGGTTTCTAAAACTGGCCCGAATTTGATAACTATATCTATTATGCCATAGAATGAATCTTCAAGAGCCACCACACAAATTTGTTCAGTCACCAGAGTATGTTAAGGGCACGGCTTTTGATGCATTTTTCCGATGAACAGTTTTTGAGTAGAATAGAAAATGTGTAACCGCCCAAACCAAAGCCCACCCCTCCTACTTAGGGAGAGATTTTCATCCTCTTATAAAGAATGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAGTCCACCCCGTTCGGAGCCCAGTGTTCTCGTTGACACTCGTTTCCTTCTCCAATTGATGTGGGACTCCCACCAATTCACTTCCCTTCAGAACTCAGCCTCCTCGCAGGCACATCACCCGGTGTCGGGCTCTAATACCATTTGTAACAGCCCAAGTTCACTGCTAGCAAATATTGTCCTCTTTGGACTTTTCCTTTTGAGTTTTCCCTCGAAGTTTTTGTAAATGCGTCTGTTAGGGAGAGTTTTTCACACCCTTATAAAAAATGTTTCGTTCTCCTCCCCAACTGACGTAGAATCTCACAAAACGCTTCTACGCTGGAACTTAAATGGATTTTAATTTGTGAGCTGGGAAAGATTTTCCAAGTTGGTATCAATAATATCGGGCCCCAAAGTCAAACATGTCAAGAATACCACTATTTTACACTTGTTTTCATGATCTAAGACAGTTCTTTATCATTCTTCTCCAATAGTTATTGCAAATGAGATTGGAAATCCTTGAAATCTACTTGGTTTTTCAATTTTTTCACTTCATAATTAAATCTACCTTTGTATTTACCTTCTGAAAGTTCTTCCAAATGCTTTAGTTTTTCAATCTTGCAGAAAACATGTAGCAAGAACAAGTTTGAGAGATCGGATTTACTGCCTTTACTTAGCTCTTTTCAATAATCTTTCAGATCTTTCCTTCATGAATAATCTGTTTAGGTATTTTTCAGGAATCAGAATGGCTTAGGGTTACCCTGCACAAATGGCTGGACGAAGAGTACTGTCCAGAGGAAACTAATGTAGAGATAAGCAAGGTTGCTGCAAAATCATACTACAATTCTTTGTTAGAGAAGAGGACAGAGCTAGCCGATATTTTATTGAATATGGCAAGAGAATTGGAATCTATTTCATATAAGGAAAGTTTTCATGGTGCATTCTCTTCTGCCAATGCAGCAGTGAACTTAATTGCTCAAAGAATAGAGCTGTCTTAACTGTTCATCCACTTCATTTTTCAAAGTAACAGGCTAATTTATCTCTTCACTTTTCTTTCTTATGAGTAGCTCATCTGATGTCAGATCAGATCTATATTTATGGACAAACAATTCTTGTATTACTTTTTGTTCTTCAATGTCAAAGCAACTTTCTGTGACTGAGTATGGATGTTCTTAAACCAGATCCTACAAGTTTGACTCCAAGACCTCAACTCTTGCTCTGAAAGGCATAGCACTTTCAGAAATGCGTTCAAATGGTGGCTCGAAGGCAAAGCTAGAATTTGTAAGTACTATTAGCTAAGGCATCTATTTGGTCCTTCAAAGATACTCGAGTAGGTTTTTCAAGTCTTTTGAGGAGGATTGAATCTATGATATTTTGATTCATGATATATTGTTTTAATGAGTTGTGGTATGGTTAAGCTAGCACAACCTCGAATTAGAGCACCAATCTTAGGGACTGCAAGTACAACAGCGAACTTGGATTAGAGAAGTTTTTTTGATCAAATTGTAAATTTAGTCGAGTTAAAAAGAAAGTTAGAATTTAGTTCTTATAGTTAAATATATCTTCCATCACTTATTATCTAATCAATTTTTTCCTGTAGGAAGAAGATCTCTCTTCCCTCTGACCTATGGGTTGTATTCCATTCTTTCTTTATTGGAAGTTTGTTTCTTATACATGTACAAGACAGAAAATCAAGAGCGAGTGCTGTTAGGGTTTGCCATTCGTGCAAGTTTAGTTTGGAGTAGGAACAATAAGGTCGTTATGTTCATTACTAAACTTATCCTAGAGATGATATAGACGTGAATACAAATAAAAAAACATCTC CATCAACTGGTTGGGATCTCGGAGAATCACAGAAAACAGAGCGAAAATGGAGTCTCTGATTTTGGTTCCATCTAGTAGGCACGTTTCAATCACTAATTCTTCTGCGTTTTCCTCCGATTTTTCGGTTCAATTCACTTCTAGAAAGCGCGCCATCAACTTCCGAGCTTCTTCTCCGCTGATTCTCCCTTGCAATGTCTTTCTGGACCGATTAACTCCGAGGTCTTATATTCGGTACGGACCACCGTATGGTGATCAAGATGACGATCCTGAAGAGCAGGTTGAAAGCCTCAGGGTTCCTGATGCTTGGTCGGTTCCTTCCAAGGCATTGGAGGAATCAGAATGGCTTAGGGTTACCCTGCACAAATGGCTGGACGAAGAGTACTGTCCAGAGGAAACTAATGTAGAGATAAGCAAGGTTGCTGCAAAATCATACTACAATTCTTTGTTAGAGAAGAGGACAGAGCTAGCCGATATTTTATTGAATATGGCAAGAGAATTGGAATCTATTTCATATAAGGAAAGTTTTCATGGTGCATTCTCTTCTGCCAATGCAGCAGTGAACTTAATTGCTCAAAGAATAGAGCTGTCTTAACTGTTCATCCACTTCATTTTTCAAAGTAACAGGCTAATTTATCTCTTCACTTTTCTTTCTTATGAGTAGCTCATCTGATGTCAGATCAGATCTATATTTATGGACAAACAATTCTTGTATTACTTTTTGTTCTTCAATGTCAAAGCAACTTTCTGTGACTGAGTATGGATGTTCTTAAACCAGATCCTACAAGTTTGACTCCAAGACCTCAACTCTTGCTCTGAAAGGCATAGCACTTTCAGAAATGCGTTCAAATGGTGGCTCGAAGGCAAAGCTAGAATTTGTAAGTACTATTAGCTAAGGCATCTATTTGGTCCTTCAAAGATACTCGAGTAGGTTTTTCAAGTCTTTTGAGGAGGATTGAATCTATGATATTTTGATTCATGATATATTGTTTTAATGAGTTGTGGTATGGTTAAGCTAGCACAACCTCGAATTAGAGCACCAATCTTAGGGACTGCAAGTACAACAGCGAACTTGGATTAGAGAAGTTTTTTTGATCAAATTGTAAATTTAGTCGAGTTAAAAAGAAAGTTAGAATTTAGTTCTTATAGTTAAATATATCTTCCATCACTTATTATCTAATCAATTTTTTCCTGTAGGAAGAAGATCTCTCTTCCCTCTGACCTATGGGTTGTATTCCATTCTTTCTTTATTGGAAGTTTGTTTCTTATACATGTACAAGACAGAAAATCAAGAGCGAGTGCTGTTAGGGTTTGCCATTCGTGCAAGTTTAGTTTGGAGTAGGAACAATAAGGTCGTTATGTTCATTACTAAACTTATCCTAGAGATGATATAGACGTGAATACAAATAAAAAAACATCTC ATGGAGTCTCTGATTTTGGTTCCATCTAGTAGGCACGTTTCAATCACTAATTCTTCTGCGTTTTCCTCCGATTTTTCGGTTCAATTCACTTCTAGAAAGCGCGCCATCAACTTCCGAGCTTCTTCTCCGCTGATTCTCCCTTGCAATGTCTTTCTGGACCGATTAACTCCGAGGTCTTATATTCGGTACGGACCACCGTATGGTGATCAAGATGACGATCCTGAAGAGCAGGTTGAAAGCCTCAGGGTTCCTGATGCTTGGTCGGTTCCTTCCAAGGCATTGGAGGAATCAGAATGGCTTAGGGTTACCCTGCACAAATGGCTGGACGAAGAGTACTGTCCAGAGGAAACTAATGTAGAGATAAGCAAGGTTGCTGCAAAATCATACTACAATTCTTTGTTAGAGAAGAGGACAGAGCTAGCCGATATTTTATTGAATATGGCAAGAGAATTGGAATCTATTTCATATAAGGAAAGTTTTCATGGTGCATTCTCTTCTGCCAATGCAGCAGTGAACTTAATTGCTCAAAGAATAGAGCTGTCTTAA MESLILVPSSRHVSITNSSAFSSDFSVQFTSRKRAINFRASSPLILPCNVFLDRLTPRSYIRYGPPYGDQDDDPEEQVESLRVPDAWSVPSKALEESEWLRVTLHKWLDEEYCPEETNVEISKVAAKSYYNSLLEKRTELADILLNMARELESISYKESFHGAFSSANAAVNLIAQRIELS
BLAST of Carg22169-RA vs. NCBI nr
Match: XP_023004672.1 (uncharacterized protein LOC111497897 [Cucurbita maxima] >XP_023004673.1 uncharacterized protein LOC111497897 [Cucurbita maxima]) HSP 1 Score: 348.2 bits (892), Expect = 1.7e-92 Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 0
BLAST of Carg22169-RA vs. NCBI nr
Match: XP_023515033.1 (uncharacterized protein LOC111779179 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 347.1 bits (889), Expect = 3.7e-92 Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 0
BLAST of Carg22169-RA vs. NCBI nr
Match: XP_022959936.1 (uncharacterized protein LOC111460840 [Cucurbita moschata] >XP_022959937.1 uncharacterized protein LOC111460840 [Cucurbita moschata]) HSP 1 Score: 345.5 bits (885), Expect = 1.1e-91 Identity = 176/181 (97.24%), Postives = 178/181 (98.34%), Query Frame = 0
BLAST of Carg22169-RA vs. NCBI nr
Match: XP_022150155.1 (uncharacterized protein LOC111018405 [Momordica charantia] >XP_022150156.1 uncharacterized protein LOC111018405 [Momordica charantia] >XP_022150157.1 uncharacterized protein LOC111018405 [Momordica charantia] >XP_022150158.1 uncharacterized protein LOC111018405 [Momordica charantia] >XP_022150159.1 uncharacterized protein LOC111018405 [Momordica charantia]) HSP 1 Score: 286.6 bits (732), Expect = 6.0e-74 Identity = 147/182 (80.77%), Postives = 161/182 (88.46%), Query Frame = 0
BLAST of Carg22169-RA vs. NCBI nr
Match: XP_008451429.1 (PREDICTED: uncharacterized protein LOC103492727 [Cucumis melo] >XP_008451430.1 PREDICTED: uncharacterized protein LOC103492727 [Cucumis melo] >XP_008451431.1 PREDICTED: uncharacterized protein LOC103492727 [Cucumis melo]) HSP 1 Score: 276.9 bits (707), Expect = 4.7e-71 Identity = 146/182 (80.22%), Postives = 158/182 (86.81%), Query Frame = 0
BLAST of Carg22169-RA vs. TAIR10
Match: AT4G03150.1 (unknown protein) HSP 1 Score: 162.2 bits (409), Expect = 3.1e-40 Identity = 75/109 (68.81%), Postives = 96/109 (88.07%), Query Frame = 0
BLAST of Carg22169-RA vs. TrEMBL
Match: tr|A0A1S3BS97|A0A1S3BS97_CUCME (uncharacterized protein LOC103492727 OS=Cucumis melo OX=3656 GN=LOC103492727 PE=4 SV=1) HSP 1 Score: 276.9 bits (707), Expect = 3.1e-71 Identity = 146/182 (80.22%), Postives = 158/182 (86.81%), Query Frame = 0
BLAST of Carg22169-RA vs. TrEMBL
Match: tr|A0A0A0K5Q9|A0A0A0K5Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390120 PE=4 SV=1) HSP 1 Score: 270.8 bits (691), Expect = 2.2e-69 Identity = 143/182 (78.57%), Postives = 155/182 (85.16%), Query Frame = 0
BLAST of Carg22169-RA vs. TrEMBL
Match: tr|A0A2N9GT66|A0A2N9GT66_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30575 PE=4 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 8.1e-43 Identity = 95/130 (73.08%), Postives = 106/130 (81.54%), Query Frame = 0
BLAST of Carg22169-RA vs. TrEMBL
Match: tr|A0A1R3I5G9|A0A1R3I5G9_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14778 PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42 Identity = 90/110 (81.82%), Postives = 98/110 (89.09%), Query Frame = 0
BLAST of Carg22169-RA vs. TrEMBL
Match: tr|A0A1U8K8B1|A0A1U8K8B1_GOSHI (uncharacterized protein LOC107913203 OS=Gossypium hirsutum OX=3635 GN=LOC107913203 PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42 Identity = 97/142 (68.31%), Postives = 108/142 (76.06%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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