Carg19777 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGATCGGAGCCCTAGAAAGTGCCGGCGAAGGGGAATCATCCACCGTCACCGTCACTGTCACTGGTACTCTAAGGATCTTGAGGGAGATGGAAGAAACCTAAGAATAAAATTAATGAATTAATGATTTGAACTGTTCTTCTTTCTTCTCAATTGCCTCAAGTAGTTTCAGTTTCCTCTCCGATGTTTTTAGCTTATGATTTTGCGAATTTTACTTTCTTCTCGAATATGGAAAGTTTAGGACTCTCAATTAGTTGTACAAATCTTCAGGTTGTTAAACAAGATAGTTTTTATATCTTTGTGTTATCGGTATATTCGAGAAAATTGAGGTTCGTTCATTCTGTGTAGCCGCGATTATATCTCTCTAAGGATCGTGAGGGAGATGGAAGAAACCTCTCCTGATCCTTGTGTAGTATTCCTTTAGAATGAGTGGTGGCCGGCAGCGGACCCTCGGGGTTGGGATTCAGCATATTTTAGACTATCTGAAACGAATGCAGGCTGAGAATCCTGCTTTTTACTATGCAGTTCAGGGCGATGGAGATCACTCTGGGTGGAGTATATTGGGAATCGGAATGTGGGTACTTGACTGGATGCTCCTCCATTGATCTTGACTTGCTTCATTGCATTCATTCATTCTTTGCTTAACTATCCCAGATAGGCTTAACCAAGATGCTGTTGCAGAGGTTCTTCCAGGAACCCGCCATTGTTTTTGCAGGTGGGCTATATTCAGAGAACCACAGGGGAAGTTGACTCATCTCTGTCAATCTCATTCTACTTTCGAAGCTGAATTTAGAAAAATGAGTTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAGTATTACATTATGGACAATGAATGGCTTCAATTAATGTATAGTGCTAGACAACAGTGGGGGTACCTGTTTATG TGATCGGAGCCCTAGAAAGTGCCGGCGAAGGGGAATCATCCACCGTCACCGTCACTTATTCCTTTAGAATGAGTGGTGGCCGGCAGCGGACCCTCGGGGTTGGGATTCAGCATATTTTAGACTATCTGAAACGAATGCAGGCTGAGAATCCTGCTTTTTACTATGCAGTTCAGGGCGATGGAGATCACTCTGGGTGGAGTATATTGGGAATCGGAATGTGGATAGGCTTAACCAAGATGCTGTTGCAGAGGTTCTTCCAGGAACCCGCCATTGTTTTTGCAGGTGGGCTATATTCAGAGAACCACAGGGGAATTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAGTATTACATTATGGACAATGAATGGCTTCAATTAATGTATAGTGCTAGACAACAGTGGGGGTACCTGTTTATG ATGAGTGGTGGCCGGCAGCGGACCCTCGGGGTTGGGATTCAGCATATTTTAGACTATCTGAAACGAATGCAGGCTGAGAATCCTGCTTTTTACTATGCAGTTCAGGGCGATGGAGATCACTCTGGGTGGAGTATATTGGGAATCGGAATGTGGATAGGCTTAACCAAGATGCTGTTGCAGAGGTTCTTCCAGGAACCCGCCATTGTTTTTGCAGGTGGGCTATATTCAGAGAACCACAGGGGAATTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAGTATTACATTATGGACAATGAATGGCTTCAATTAATGTATAGTGCTAGACAACAGTGGGGGTACCTGTTTATG MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIVFAGGLYSENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQWGYLFM
BLAST of Carg19777 vs. NCBI nr
Match: XP_022947931.1 (uncharacterized protein LOC111451664 isoform X3 [Cucurbita moschata]) HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27 Identity = 66/80 (82.50%), Postives = 66/80 (82.50%), Query Frame = 0
BLAST of Carg19777 vs. NCBI nr
Match: XP_022944451.1 (protein FAR1-RELATED SEQUENCE 9 [Cucurbita moschata] >XP_022944452.1 protein FAR1-RELATED SEQUENCE 9 [Cucurbita moschata]) HSP 1 Score: 124.4 bits (311), Expect = 2.7e-25 Identity = 81/226 (35.84%), Postives = 96/226 (42.48%), Query Frame = 0
BLAST of Carg19777 vs. NCBI nr
Match: XP_023513010.1 (protein FAR1-RELATED SEQUENCE 9-like [Cucurbita pepo subsp. pepo] >XP_023513011.1 protein FAR1-RELATED SEQUENCE 9-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 124.4 bits (311), Expect = 2.7e-25 Identity = 81/226 (35.84%), Postives = 96/226 (42.48%), Query Frame = 0
BLAST of Carg19777 vs. NCBI nr
Match: XP_008448156.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Cucumis melo]) HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24 Identity = 86/223 (38.57%), Postives = 99/223 (44.39%), Query Frame = 0
BLAST of Carg19777 vs. NCBI nr
Match: XP_022985850.1 (protein FAR1-RELATED SEQUENCE 9-like [Cucurbita maxima] >XP_022985851.1 protein FAR1-RELATED SEQUENCE 9-like [Cucurbita maxima]) HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24 Identity = 78/222 (35.14%), Postives = 95/222 (42.79%), Query Frame = 0
BLAST of Carg19777 vs. TAIR10
Match: AT2G27110.1 (FAR1-related sequence 3) HSP 1 Score: 56.6 bits (135), Expect = 1.3e-08 Identity = 54/217 (24.88%), Postives = 76/217 (35.02%), Query Frame = 0
BLAST of Carg19777 vs. TAIR10
Match: AT4G38180.1 (FAR1-related sequence 5) HSP 1 Score: 55.5 bits (132), Expect = 2.8e-08 Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 0
HSP 2 Score: 47.4 bits (111), Expect = 7.7e-06 Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 0
BLAST of Carg19777 vs. TAIR10
Match: AT4G38170.1 (FAR1-related sequence 9) HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07 Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 0
HSP 2 Score: 42.0 bits (97), Expect = 3.2e-04 Identity = 15/32 (46.88%), Postives = 23/32 (71.88%), Query Frame = 0
BLAST of Carg19777 vs. TAIR10
Match: AT5G18960.1 (FAR1-related sequence 12) HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05 Identity = 21/57 (36.84%), Postives = 31/57 (54.39%), Query Frame = 0
BLAST of Carg19777 vs. TAIR10
Match: AT3G06250.1 (FAR1-related sequence 7) HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04 Identity = 16/44 (36.36%), Postives = 29/44 (65.91%), Query Frame = 0
BLAST of Carg19777 vs. Swiss-Prot
Match: sp|Q9ZVC9|FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=FRS3 PE=1 SV=2) HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07 Identity = 54/217 (24.88%), Postives = 76/217 (35.02%), Query Frame = 0
BLAST of Carg19777 vs. Swiss-Prot
Match: sp|Q9SZL8|FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 5.1e-07 Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 0
HSP 2 Score: 47.4 bits (111), Expect = 1.4e-04 Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 0
BLAST of Carg19777 vs. Swiss-Prot
Match: sp|Q9SZL7|FRS9_ARATH (Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana OX=3702 GN=FRS9 PE=2 SV=2) HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06 Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 0
HSP 2 Score: 42.0 bits (97), Expect = 5.8e-03 Identity = 15/32 (46.88%), Postives = 23/32 (71.88%), Query Frame = 0
BLAST of Carg19777 vs. Swiss-Prot
Match: sp|Q3E7I5|FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04 Identity = 21/57 (36.84%), Postives = 31/57 (54.39%), Query Frame = 0
BLAST of Carg19777 vs. TrEMBL
Match: tr|A0A1S3BIG2|A0A1S3BIG2_CUCME (protein FAR1-RELATED SEQUENCE 9 OS=Cucumis melo OX=3656 GN=LOC103490440 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24 Identity = 86/223 (38.57%), Postives = 99/223 (44.39%), Query Frame = 0
BLAST of Carg19777 vs. TrEMBL
Match: tr|A0A0A0KCS3|A0A0A0KCS3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117700 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23 Identity = 79/226 (34.96%), Postives = 94/226 (41.59%), Query Frame = 0
BLAST of Carg19777 vs. TrEMBL
Match: tr|A0A2R6RNE9|A0A2R6RNE9_ACTCH (Protein FAR1-RELATED SEQUENCE like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07202 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21 Identity = 58/135 (42.96%), Postives = 80/135 (59.26%), Query Frame = 0
BLAST of Carg19777 vs. TrEMBL
Match: tr|A0A2P6PTJ9|A0A2P6PTJ9_ROSCH (Putative Zinc finger, SWIM-type, MULE transposase domain, FHY3/FAR1 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0281571 PE=4 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 2.5e-19 Identity = 74/227 (32.60%), Postives = 92/227 (40.53%), Query Frame = 0
BLAST of Carg19777 vs. TrEMBL
Match: tr|A0A2I4H9L6|A0A2I4H9L6_9ROSI (protein FAR1-RELATED SEQUENCE 9-like OS=Juglans regia OX=51240 GN=LOC109014796 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 2.1e-18 Identity = 69/221 (31.22%), Postives = 84/221 (38.01%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |