Carg26764 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26764
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone H2A
Location	Cucurbita_argyrosperma_scaffold_281 : 103667 .. 104250 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTCATCTATTGATCGTTGCAATTAATCTTCGAATTCCGGAACTTAGATTCTGAATTTTCAACCATGGAAGGAACCAAAGGCGCCGGTGGAAGAAAAGGTGGTAACAGAAGTAAGATATCGAAGTCGGCGAAGGCCGGACTGCAATTTCCTGTCGCAAGGATCGGTCGGTACCTTAAGAAAGGCCGTTATGCACAGCGCACTGGCGCCGGAGCTCCGATCTACTTGGCTGCTGTCCTCGAATATCTCGCCGCTGAGGTAGTTTATCATTTGAGATGAGATTCATCTTCATTCGCATTCCTAGAACGTAAACAGTTCTCGATTTTAAGATTTGTGTTGATCGTAATGTAGGTTTTGGAATTGGCTGGGAATGCTGCTCGTGACAACAAGAAGAACAGGATAAACCCTAGGCATGTTCTTCTGGCTGTGAGGAATGATGAGGAGCTTGGAAAATTGCTTCAAGGAGTCACCATTGCCAGTGGTGGTGTTCTTCCAAACATCCATCCAGTCCTCCTTCCCAAGAAGTCATCGTCGAATTCCACTTCTCCTGCAGAAAAGGCTCAGAAATCGCCAAAGAAGGCCTAA

mRNA sequence

AGTTCATCTATTGATCGTTGCAATTAATCTTCGAATTCCGGAACTTAGATTCTGAATTTTCAACCATGGAAGGAACCAAAGGCGCCGGTGGAAGAAAAGGTGGTAACAGAAGTAAGATATCGAAGTCGGCGAAGGCCGGACTGCAATTTCCTGTCGCAAGGATCGGTCGGTACCTTAAGAAAGGCCGTTATGCACAGCGCACTGGCGCCGGAGCTCCGATCTACTTGGCTGCTGTCCTCGAATATCTCGCCGCTGAGGTTTTGGAATTGGCTGGGAATGCTGCTCGTGACAACAAGAAGAACAGGATAAACCCTAGGCATGTTCTTCTGGCTGTGAGGAATGATGAGGAGCTTGGAAAATTGCTTCAAGGAGTCACCATTGCCAGTGGTGGTGTTCTTCCAAACATCCATCCAGTCCTCCTTCCCAAGAAGTCATCGTCGAATTCCACTTCTCCTGCAGAAAAGGCTCAGAAATCGCCAAAGAAGGCCTAA

Coding sequence (CDS)

ATGGAAGGAACCAAAGGCGCCGGTGGAAGAAAAGGTGGTAACAGAAGTAAGATATCGAAGTCGGCGAAGGCCGGACTGCAATTTCCTGTCGCAAGGATCGGTCGGTACCTTAAGAAAGGCCGTTATGCACAGCGCACTGGCGCCGGAGCTCCGATCTACTTGGCTGCTGTCCTCGAATATCTCGCCGCTGAGGTTTTGGAATTGGCTGGGAATGCTGCTCGTGACAACAAGAAGAACAGGATAAACCCTAGGCATGTTCTTCTGGCTGTGAGGAATGATGAGGAGCTTGGAAAATTGCTTCAAGGAGTCACCATTGCCAGTGGTGGTGTTCTTCCAAACATCCATCCAGTCCTCCTTCCCAAGAAGTCATCGTCGAATTCCACTTCTCCTGCAGAAAAGGCTCAGAAATCGCCAAAGAAGGCCTAA

Protein sequence

MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKKSSSNSTSPAEKAQKSPKKA

Homology

[Close]

BLAST of Carg26764 vs. NCBI nr
Match: XP_022946249.1 (histone H2A.1-like [Cucurbita moschata] >XP_022946250.1 histone H2A.1-like [Cucurbita moschata] >XP_023545339.1 histone H2A.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.0 bits (676), Expect = 1.5e-67
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KKSSSNSTSPAEKAQKSPKKA
Sbjct: 121 KKSSSNSTSPAEKAQKSPKKA 141

[Close]

BLAST of Carg26764 vs. NCBI nr
Match: XP_022999035.1 (histone H2A.1-like [Cucurbita maxima])

HSP 1 Score: 261.2 bits (666), Expect = 2.1e-66
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGGNRSKISKS KAGLQFPVARIGRYLKKGRYAQRTG+GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSVKAGLQFPVARIGRYLKKGRYAQRTGSGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKK 141
           KKSSSNSTSPAEKAQKSPKK
Sbjct: 121 KKSSSNSTSPAEKAQKSPKK 140

[Close]

BLAST of Carg26764 vs. NCBI nr
Match: XP_004144786.1 (PREDICTED: probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_2G030610 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 7.0e-62
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYAQRT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Carg26764 vs. NCBI nr
Match: XP_008454292.1 (PREDICTED: probable histone H2A.5 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 2.0e-61
Identity = 129/141 (91.49%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Carg26764 vs. NCBI nr
Match: XP_022150784.1 (probable histone H2A.5 [Momordica charantia])

HSP 1 Score: 239.6 bits (610), Expect = 6.5e-60
Identity = 129/141 (91.49%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKSSSNST-SPAEKAQKSPKK 141
           KK+SSNST S AEKA KSPKK
Sbjct: 121 KKTSSNSTPSTAEKAPKSPKK 141

[Close]

BLAST of Carg26764 vs. TAIR10
Match: AT5G27670.1 (histone H2A 7)

HSP 1 Score: 207.2 bits (526), Expect = 6.5e-54
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 4   TKGAGGRKGGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 63
           T+GAGGRKGG+R K +SKS KAGLQFPV RI RYLKKGRYA R G+GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 123
           AEVLELAGNAARDNKKNRINPRH+ LA+RNDEELG+LL GVTIASGGVLPNI+PVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 124 SSSNSTSPAEKAQ--KSPKKA 142
           S++ S+S AEKA   KSPKKA
Sbjct: 131 STA-SSSQAEKASATKSPKKA 150

[Close]

BLAST of Carg26764 vs. TAIR10
Match: AT5G59870.1 (histone H2A 6)

HSP 1 Score: 181.4 bits (459), Expect = 3.8e-46
Identity = 106/141 (75.18%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 5   KGAGGRK--GGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYL 64
           K  GGRK  G  ++K +SKS KAGLQFPV RI R+LKKGRYAQR G GAP+Y+AAVLEYL
Sbjct: 9   KAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYL 68

Query: 65  AAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPK 124
           AAEVLELAGNAARDNKK+RI PRH+LLA+RNDEELGKLL GVTIA GGVLPNI+ VLLPK
Sbjct: 69  AAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPK 128

Query: 125 KSSSNSTSPA-EKAQKSPKKA 142
           KS   +T PA EKA KSP K+
Sbjct: 129 KS---ATKPAEEKATKSPVKS 146

[Close]

BLAST of Carg26764 vs. TAIR10
Match: AT5G02560.2 (histone H2A 12)

HSP 1 Score: 171.4 bits (433), Expect = 4.0e-43
Identity = 97/152 (63.82%), Postives = 110/152 (72.37%), Query Frame = 0


Query: 5   KGAGGRKGGNRSK---ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYL 64
           KGA GR+ G   K   +S+S K+GLQFPV RIGRYLKKGRY++R G GAP+YLAAVLEYL
Sbjct: 9   KGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYL 68

Query: 65  AAE------------------------VLELAGNAARDNKKNRINPRHVLLAVRNDEELG 124
           AAE                        VLELAGNAARDNKKNRI PRHVLLAVRNDEELG
Sbjct: 69  AAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG 128

Query: 125 KLLQGVTIASGGVLPNIHPVLLPKKSSSNSTS 130
            LL+GVTIA GGVLPNI+P+LLPKKS   +++
Sbjct: 129 TLLKGVTIAHGGVLPNINPILLPKKSEKAAST 160

[Close]

BLAST of Carg26764 vs. TAIR10
Match: AT5G54640.1 (Histone superfamily protein)

HSP 1 Score: 168.3 bits (425), Expect = 3.4e-42
Identity = 85/115 (73.91%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 12  GGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLAAEVLELAGN 71
           GG +   S+S+KAGLQFPV RI R+LK G+YA+R GAGAP+YLAAVLEYLAAEVLELAGN
Sbjct: 11  GGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 72  AARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKKSSSN 127
           AARDNKK RI PRH+ LAVRNDEEL KLL  VTIA+GGV+PNIH +LLPKK+ ++
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGAS 125

[Close]

BLAST of Carg26764 vs. TAIR10
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 167.9 bits (424), Expect = 4.4e-42
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 12  GGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLAAEVLELAGN 71
           G  +   ++S+KAGLQFPV RI R+LKKG+YA+R GAGAP+YLAAVLEYLAAEVLELAGN
Sbjct: 11  GSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 72  AARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKKSSSNSTS 130
           AARDNKK RI PRH+ LAVRNDEEL KLL  VTIA+GGV+PNIH +LLPKK+ ++  S
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKPS 128

[Close]

BLAST of Carg26764 vs. Swiss-Prot
Match: sp|P25469|H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.2e-54
Identity = 118/140 (84.29%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 4   TKGAGGRKGGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 63
           TKGAGGRKGG R K ++KS KAGLQFPV RIGRYLKKGRYAQR G+GAPIYLAAVLEYLA
Sbjct: 7   TKGAGGRKGGPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLA 66

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 123
           AEVLELAGNAARDNKK+RI PRHVLLAVRNDEELGKLL GVTIASGGVLPNI+PVLLPKK
Sbjct: 67  AEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKK 126

Query: 124 SS-SNSTSPAEKAQKSPKKA 142
           S+ +   SP  KA KSPKKA
Sbjct: 127 SAVAEEKSPKAKAGKSPKKA 146

[Close]

BLAST of Carg26764 vs. Swiss-Prot
Match: sp|Q94F49|H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-52
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 4   TKGAGGRKGGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 63
           T+GAGGRKGG+R K +SKS KAGLQFPV RI RYLKKGRYA R G+GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 123
           AEVLELAGNAARDNKKNRINPRH+ LA+RNDEELG+LL GVTIASGGVLPNI+PVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 124 SSSNSTSPAEKAQ--KSPKKA 142
           S++ S+S AEKA   KSPKKA
Sbjct: 131 STA-SSSQAEKASATKSPKKA 150

[Close]

BLAST of Carg26764 vs. Swiss-Prot
Match: sp|Q2HU68|H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51
Identity = 111/140 (79.29%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 5   KGAGGRKGGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLAA 64
           KGAGGRKGG R K +++S +AGLQFPV RIGRYLKKGRYAQR G GAP+YLAAVLEYLAA
Sbjct: 9   KGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAA 68

Query: 65  EVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKKS 124
           EVLELAGNAARDNKKNRI PRHVLLAVRNDEELGKLL GVTIA GGVLPNI+P+LLPKK+
Sbjct: 69  EVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKN 128

Query: 125 --SSNSTSPAEKAQKSPKKA 142
             ++ +T    KA KSPKKA
Sbjct: 129 EKAATTTKSPSKATKSPKKA 148

[Close]

BLAST of Carg26764 vs. Swiss-Prot
Match: sp|Q2HU65|H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.8e-51
Identity = 112/145 (77.24%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 5   KGAGGRKGG--NRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 64
           KGAGGRKGG   +  +++S +AGLQFPV RIGRYLKKGRYAQR G GAP+YLAAVLEYLA
Sbjct: 9   KGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLA 68

Query: 65  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 124
           AEVLELAGNAARDNKKNRI PRHVLLAVRNDEELGKLL GVTIA GGVLPNI+PVLLPKK
Sbjct: 69  AEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128

Query: 125 SSSNST------SPAEKAQKSPKKA 142
           +  ++T      SP  KA KSPKKA
Sbjct: 129 TERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]

BLAST of Carg26764 vs. Swiss-Prot
Match: sp|Q1S053|H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula OX=3880 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 9.3e-50
Identity = 109/143 (76.22%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 5   KGAGGRKGG--NRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 64
           KGAGGRKGG   +  +++S +AGLQFPV RIGRYLKKGRYAQR G GAP+YLAAVLEYLA
Sbjct: 10  KGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLA 69

Query: 65  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 124
           AEVLELAGNAARDNKKNRI PRH+LLAVRNDEELGKLL GVTIA GGVLPNI+P+LLPKK
Sbjct: 70  AEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK 129

Query: 125 SSSNSTSPAE----KAQKSPKKA 142
           +   +T   E    KA KSPKKA
Sbjct: 130 TERANTGGKEPKTTKAGKSPKKA 152

[Close]

BLAST of Carg26764 vs. TrEMBL
Match: tr|A0A0A0LLV9|A0A0A0LLV9_CUCSA (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 4.6e-62
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYAQRT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Carg26764 vs. TrEMBL
Match: tr|A0A1S3BZ15|A0A1S3BZ15_CUCME (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.3e-61
Identity = 129/141 (91.49%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60
           MEGTKGAGGRKGG+R+K+SKS KAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKSSSNSTSPAEKAQKSPKKA 142
           KK++SNST  AEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Carg26764 vs. TrEMBL
Match: tr|A0A068VIM7|A0A068VIM7_COFCA (Histone H2A OS=Coffea canephora OX=49390 GN=GSCOC_T00005157001 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.0e-53
Identity = 117/139 (84.17%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 4   TKGAGGRKGGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 63
           TKGAGGRKGG R K ++KS KAGLQFPV RI RYLKKGRYAQRTG GAPIY+AAVLEYLA
Sbjct: 7   TKGAGGRKGGERKKAVTKSVKAGLQFPVGRIARYLKKGRYAQRTGIGAPIYMAAVLEYLA 66

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 123
           AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLPKK
Sbjct: 67  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 126

Query: 124 SSSNSTSPAEKAQKSPKKA 142
           ++++    A K  KSPKKA
Sbjct: 127 TAASEEKAATKQSKSPKKA 145

[Close]

BLAST of Carg26764 vs. TrEMBL
Match: tr|A0A2I4GPT2|A0A2I4GPT2_9ROSI (Histone H2A OS=Juglans regia OX=51240 GN=LOC109009751 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.0e-53
Identity = 118/139 (84.89%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 4   TKGAGGRKGGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 63
           T+GAGGR+GG+R K +SKS KAGLQFPV RI RYLKKGRYAQRTG GAPIYLAAVLEYLA
Sbjct: 8   TRGAGGRRGGDRKKSVSKSIKAGLQFPVGRIARYLKKGRYAQRTGTGAPIYLAAVLEYLA 67

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 123
           AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIA+GGVLPNI+PVLLPKK
Sbjct: 68  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIANGGVLPNINPVLLPKK 127

Query: 124 SSSNSTSPAEKAQKSPKKA 142
           +   +TS +EK  KSPKKA
Sbjct: 128 T---ATSESEKVSKSPKKA 143

[Close]

BLAST of Carg26764 vs. TrEMBL
Match: tr|A0A2I4HFN0|A0A2I4HFN0_9ROSI (Histone H2A OS=Juglans regia OX=51240 GN=LOC109017111 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 113/139 (81.29%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 4   TKGAGGRKGGNRSK-ISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEYLA 63
           ++GAGGR+GG+R K +SKS KAGLQFPV RI RYLKKGRYAQRTG+GAPIYLAAVLEYLA
Sbjct: 7   SRGAGGRRGGDRKKSVSKSMKAGLQFPVGRIARYLKKGRYAQRTGSGAPIYLAAVLEYLA 66

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLPKK 123
           AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+P+LLPKK
Sbjct: 67  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPILLPKK 126

Query: 124 SSSNSTSPAEKAQKSPKKA 142
           +++ S   ++  +K+PKKA
Sbjct: 127 TATESDKASKSPKKTPKKA 145

The following BLAST results are available for this feature:

BLAST of Carg26764 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946249.1	1.5e-67	100.00	histone H2A.1-like [Cucurbita moschata] >XP_022946250.1 histone H2A.1-like [Cucu...	[more]
XP_022999035.1	2.1e-66	98.57	histone H2A.1-like [Cucurbita maxima]	[more]
XP_004144786.1	7.0e-62	92.20	PREDICTED: probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical pro...	[more]
XP_008454292.1	2.0e-61	91.49	PREDICTED: probable histone H2A.5 [Cucumis melo]	[more]
XP_022150784.1	6.5e-60	91.49	probable histone H2A.5 [Momordica charantia]	[more]

BLAST of Carg26764 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27670.1	6.5e-54	81.56	histone H2A 7	[more]
AT5G59870.1	3.8e-46	75.18	histone H2A 6	[more]
AT5G02560.2	4.0e-43	63.82	histone H2A 12	[more]
AT5G54640.1	3.4e-42	73.91	Histone superfamily protein	[more]
AT1G51060.1	4.4e-42	72.03	histone H2A 10	[more]

BLAST of Carg26764 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P25469\|H2A1_SOLLC	6.2e-54	84.29	Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
sp\|Q94F49\|H2A5_ARATH	1.2e-52	81.56	Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1	[more]
sp\|Q2HU68\|H2A1_MEDTR	1.7e-51	79.29	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
sp\|Q2HU65\|H2A2_MEDTR	3.8e-51	77.24	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
sp\|Q1S053\|H2A3_MEDTR	9.3e-50	76.22	Probable histone H2A.3 OS=Medicago truncatula OX=3880 PE=3 SV=1	[more]

BLAST of Carg26764 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLV9\|A0A0A0LLV9_CUCSA	4.6e-62	92.20	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1	[more]
tr\|A0A1S3BZ15\|A0A1S3BZ15_CUCME	1.3e-61	91.49	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1	[more]
tr\|A0A068VIM7\|A0A068VIM7_COFCA	1.0e-53	84.17	Histone H2A OS=Coffea canephora OX=49390 GN=GSCOC_T00005157001 PE=3 SV=1	[more]
tr\|A0A2I4GPT2\|A0A2I4GPT2_9ROSI	3.0e-53	84.89	Histone H2A OS=Juglans regia OX=51240 GN=LOC109009751 PE=3 SV=1	[more]
tr\|A0A2I4HFN0\|A0A2I4HFN0_9ROSI	1.1e-52	81.29	Histone H2A OS=Juglans regia OX=51240 GN=LOC109017111 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR032458	Histone_H2A_CS
IPR032454	Histone_H2A_C
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold
IPR002119	Histone_H2A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26764-RA	Carg26764-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 16..38 score: 57.89 coord: 102..120 score: 76.69 coord: 45..60 score: 79.88 coord: 60..73 score: 89.46 coord: 74..88 score: 70.35
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 5..125 e-value: 1.6E-74 score: 263.6
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 7..122 e-value: 1.45146E-63 score: 191.394
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 3..129 e-value: 6.2E-59 score: 199.4
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 17..122
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 15..91 e-value: 3.5E-13 score: 50.0
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 94..127 e-value: 2.7E-19 score: 68.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..134
None	No IPR available	PANTHER	PTHR23430:SF208	SUBFAMILY NOT NAMED	coord: 3..140
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 3..140
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 24..30

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26764	Cla019920	Watermelon (97103) v1	carwmB0739
Carg26764	Csa2G030610	Cucumber (Chinese Long) v2	carcuB0758
Carg26764	MELO3C004227	Melon (DHL92) v3.5.1	carmeB0737
Carg26764	ClCG02G015490	Watermelon (Charleston Gray)	carwcgB0719
Carg26764	CSPI02G04250	Wild cucumber (PI 183967)	carcpiB0775
Carg26764	Cucsa.091130	Cucumber (Gy14) v1	carcgyB0834
Carg26764	CmaCh05G011220	Cucurbita maxima (Rimu)	carcmaB1038
Carg26764	CmoCh05G011350	Cucurbita moschata (Rifu)	carcmoB1009
Carg26764	Lsi11G005840	Bottle gourd (USVL1VR-Ls)	carlsiB679
Carg26764	Cp4.1LG11g09180	Cucurbita pepo (Zucchini)	carcpeB1044
Carg26764	MELO3C004227.2	Melon (DHL92) v3.6.1	carmedB0750
Carg26764	CsaV3_2G006590	Cucumber (Chinese Long) v3	carcucB0778
Carg26764	Cla97C02G041250	Watermelon (97103) v2	carwmbB0777
Carg26764	Bhi06G001288	Wax gourd	carwgoB0877

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26764	Cucumber (Gy14) v2	carcgybB0737
Carg26764	Cucurbita maxima (Rimu)	carcmaB1037
Carg26764	Cucurbita moschata (Rifu)	carcmoB1008
Carg26764	Cucurbita pepo (Zucchini)	carcpeB1045