Carg17555-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTGACAGAATCGGAACTCCCTTTTCCGAAGTCTCCGGCTACTTTCCGATGACTTCTCCGGCTAGGTATATTCTTCTTTTGACGTTCGATGTAACTATGGTGTCTGTATCTCTGTATCAGTTTTTAATCATCGGTTACTGCTGGTGTGGAGATTTTCTCTTTTCTAATTACTGTCTTCCGTTTATTGGCACTTGAACATTCTATTGTTGAAGAAGATAGGTATTAGGTCAAGGGTTTTTGGTGATAATGAGAAATGAACTGTAGTTACGGGTTTTAGAAGAATTGATGGAAATTTTTGTGTTCTATTTGTTTGCTATTGAATGTGTGTATGTGTAGTGGTTATTTTGCGGTGTTTTTGTTTTGAATTGGTGCGTAAGAGTGGAAATCAGGGGGAAATTTGTTGGAAATTTTGGCGATTTTAAAATAGTTGAGGTTCTCGGTAATGGGAGTTCGTGGATGAGCCTGAACTTTTGTCATCTATGGTTCTGATTGTATTTTGAGACGAGTTCTGTTCTTTGGTCGGTATGAAATCGGATTGAACGTAAGTGCTTGTTCATGGCTCTTCTTTTTGGACCTGAACTGATTTGATATTCTATGTACTTCACGGGTTCATGAGTTTTTCTTCTTTTTTTTTGGAGAAGCTGAATTTTGGTTGACTTAATGGTTGATAAGAGCATGTAATAATAAAGGATTTAAGGAATGAGTTCAAGTCATGGTGGCCATCTGTTTAGAATTTAACAAGTGGTTTCAAATGGTTGTCTCTTAAGATTTGTCAAGGTGTGCGCAAGTTGGCTCAAAGATTCATAGATGTGAAAAACGAAAAACACCTTAGTTATGTCCAACAATCTTACGTTTTTAGAAAAATAACACCGAGAGGAGAGGAAGAAGAAGAAAAAGAAGGGCCTACTCGAGTTGAGTTATTGCCAACACTCTTACGTTTTTAGATATGTTAACCTTTTCTTAATCACATGATAAACACCTTAGTTGTTGTGTGTTACACCCTCCTCCATCTTGAGAATTTCTGTTTGTTGCTGTCTCGTTCTCTCTCTTGGTTGGGTAAACTCACCCAGATGTCCAAATTCACATAATATCCTATTGACAGCTTAGGCCAGGCATTACAGCATTTGATAGCCCAAGCACATGATTAACCTCGTGGCAATTTTTTTAGGCATGTGGCACACTCTTTTGTACCTGTCCCTGTAGTTGTGAGATCCCACATCGGTTGGGAAGAAGAATGAAGCATTCTTTATAAATGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGAAAAACTCAAAGAGGACAATATTTGCTAGCGGTGGGGTTGGGCTGTTACAAATGGTATCAGAGCCAGACATCGGGTGATGTGTCAGTGAGGAGGCTGAGCCACGAAGGGGGGTGGACATGAGACGGTGTGCCAACAAGGACGCCGGGTCTTGGAGAGGAGGGGTGGATTGGGGGGTCCCATATCAATTGGAGAAGAAAACGAGTTCCAGCGAGGACGCTGAGCCCCGAAGGGGGGTGAATTGTGAGATCCCACATGGGTTGGGGAGGAGAACGAATCATTTTTTATAGGAGTGTGAAAACATCTCCTTAGCAGATGCGTTTTAAAAACCTTAAGGGGAAGCCCGAAAGGAAAAGCTCAAAAAAGACAATATCTGCTAGCGGAGGGCTTGGGCGATTACAGCAAGTCCAGGCATTCATCTTTGTCTTCTTATATTAGTAACGTGAATAAATACTCTGGAAGAAACAAGTCCATTAAGTGAGTCCTCTCTGTGACATTTTGGCTTCAGTCTGAGAAAAGTTTATTTACGCTTTGAGAAATTTATTTTTTTCAAAGAGGTTATGTTTGTCAAGAGAAATTGTTGGAAATGGCTGTCAAAATCTGCCCTTCTCTCTGTTGTTTCGACCACATGAACTACACCTCGGTGAAGAAAGGAAATCTTTTAAGACTAAAATATCCTTTCTTTTTTCTTACTATTTTTCTCTTGAAAATCTGTATGCATTGGAATAATTTGACCAAATGGGTTATGCCTAGATATTTCATGATATGTTAGCATACTTTCCAATCTTTTATTTTCTATTTATAATTATACTTTGGTTCATTATAAGTCATATATCTCATATCACGGTGGTGATATCTTTTATGCTCTTCTCCCCCCACCCCCGCCTTACATGATGAGCACGTCACTTGCACGTAAACACTATATCACATACACACAAGAGGGTAGAAGTTTCCTTCACAATTTTTGCTTTTGGCAACGACTTTTGTCATAATCTCAGACTAGATTGTATTAGATGTCTGTCTCCCTTCTCAAATGCCCATTACAACACCTCCAAGACCATCTTTTACTTATGAGTTAATTCTCTAAGGAAGAAATGTTCTCATTTGACTTGAGTAGGGACTGAACATACTGTTGGACTGCTTATAGTATTGGTTCAATTTGGAAGTGTTTGTTATATCTTTTGTAGCGTAGAGTTTAAAGAACCCCACCTCCAAGTGGTGGCCCTAGTTATATGAGCTTGGATGCTTGAAGATATCTTGGTGTCCCTAAATGGAAAATTTAGGCTCTGTTTATAACCATTTGGTCTTTGGTTTTTGAAAATTTGACTAAGAATTTAAATATTTTTTAAGGAAGTTGTAACACATCTTAGAGAAATGGTAAGAAAACAAGTACAATTTTCAAAAACCAAAATGGTTATCAAATGTAGCCTTAATAATTCAAAATCTTTGTTCTCTCAAAGTTGACCTTTTGATGCATGAACCTCCTTGAGATTAGTGGGAGTGGGAGTGAGACCTGAGCATAATATGAGGGAGATTGTGAGATCCCACATCGGTTGGAGAGGAGGAGGAAGCATTCTTTATAAGGGTGTAGAAACCTTTCCTAGCATACGCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGAGAAAGTCTAAATAAGACAATATCTGCTAGCGGTGGGCTTGGGCCGTCATAAATGGTATCAGAGCCAGACACCGGGCGATGTGCCGGCGAGGAGGCTGAACTTTGAAGGGGGTGGACATGAGGCGGTGTGCCAGCAAGGATGCTGGGCCCCAAAGGGGGTGGATTGTGGGGTCCCACATCGATTGAAGAAGCGAACAAGTGTCGGCGAGGACGCTTGGTCCTGAAGGGGGTAGATTGTAAAATCCCACATCGGTTGGGGAATGAAACATTCTTTATAGGGGTGTGGAAATCTCTCCCTAGCCGACGCATTTTAAAAATTTTGAGGGGAAGTCCAAAAGAGAAATCCCGAAGAGGGTAAAATGCCCATCTCAGTGGGCTTGGACTTGGACCGTTAGAGTGATCCTTTAGCACCTTTTTTATTAGGAAAAGAAAGGATCTTAAAGACTCATCCTTCATGTCTGTTCAATAAACGGTATAAAGGAAAGGCATCAGACTATGTTTTGATCATATTACTGTCTTGCAGGGCTGAGGACACAAGAAAAAATGAGGCAGAACCATTAAGTCTTCGTAACCAGATTCTCGATGTGGCTCCCATCAATAGCATGCCATATATTGGTCCACCTCTACCACACAGCTACATTCCTTCTTCTCCGCAAGCAGAAGATCCCGAGGCTGTGGTGAACGTTGGGCCAGCTATGGTATATTGTCCTCTGACAACCCGTCAAGAGTGGGACAATATTGTATCTTCCACCAAAAGCGGGGTTGCCCTCACTGGAACTGCAGCCATGGGAAAAGTTGGACCAGTTATCGGACGTGTGGACATCGGTGAGGATGACAATTCGTACTTCTTCCGTGTCTCTCTTCCAGGGGTGGCTAGAGATCAAAGTGAGTGTTTGTTGAAATCAATCAGTTCTCTCTCACTTACTCTCCTACCATAATGTGCAGCTGTTAATGTTATCCTACCAATATCAGCACAAGATTGTTCTTATATCTGTTGTTACATCGTCGCAATCATGTCGATTCCTGTTTCGGTGCACATGAAAACTATCTATCTGACCAGACTATTGTTTTATGGCAGCAGACAGTTTCAGCTGCGACATGGACCCGGACGGGAAAGTGAAAATAATAGGAGTAACGACGACAGGCGAGAACATAGTATGTAAGAACTCACAAGTGTTTCGGATGCAGTCGAAAAATCTATGTCCACCAGGTCATTTCTCTATCACTTTTCAGCTACCTGGTCCTGTCAATAACCTGCAATTTTCTGGTGCTTTTGGGGCAGATGGGATTTTAGAAGGCAGTGTAGCTAAAGGGTGA TTGACAGAATCGGAACTCCCTTTTCCGAAGTCTCCGGCTACTTTCCGATGACTTCTCCGGCTAGGGCTGAGGACACAAGAAAAAATGAGGCAGAACCATTAAGTCTTCGTAACCAGATTCTCGATGTGGCTCCCATCAATAGCATGCCATATATTGGTCCACCTCTACCACACAGCTACATTCCTTCTTCTCCGCAAGCAGAAGATCCCGAGGCTGTGGTGAACGTTGGGCCAGCTATGGTATATTGTCCTCTGACAACCCGTCAAGAGTGGGACAATATTGTATCTTCCACCAAAAGCGGGGTTGCCCTCACTGGAACTGCAGCCATGGGAAAAGTTGGACCAGTTATCGGACGTGTGGACATCGGTGAGGATGACAATTCGTACTTCTTCCGTGTCTCTCTTCCAGGGGTGGCTAGAGATCAAACAGACAGTTTCAGCTGCGACATGGACCCGGACGGGAAAGTGAAAATAATAGGAGTAACGACGACAGGCGAGAACATAGTATGTAAGAACTCACAAGTGTTTCGGATGCAGTCGAAAAATCTATGTCCACCAGGTCATTTCTCTATCACTTTTCAGCTACCTGGTCCTGTCAATAACCTGCAATTTTCTGGTGCTTTTGGGGCAGATGGGATTTTAGAAGGCAGTGTAGCTAAAGGGTGA ATGACTTCTCCGGCTAGGGCTGAGGACACAAGAAAAAATGAGGCAGAACCATTAAGTCTTCGTAACCAGATTCTCGATGTGGCTCCCATCAATAGCATGCCATATATTGGTCCACCTCTACCACACAGCTACATTCCTTCTTCTCCGCAAGCAGAAGATCCCGAGGCTGTGGTGAACGTTGGGCCAGCTATGGTATATTGTCCTCTGACAACCCGTCAAGAGTGGGACAATATTGTATCTTCCACCAAAAGCGGGGTTGCCCTCACTGGAACTGCAGCCATGGGAAAAGTTGGACCAGTTATCGGACGTGTGGACATCGGTGAGGATGACAATTCGTACTTCTTCCGTGTCTCTCTTCCAGGGGTGGCTAGAGATCAAACAGACAGTTTCAGCTGCGACATGGACCCGGACGGGAAAGTGAAAATAATAGGAGTAACGACGACAGGCGAGAACATAGTATGTAAGAACTCACAAGTGTTTCGGATGCAGTCGAAAAATCTATGTCCACCAGGTCATTTCTCTATCACTTTTCAGCTACCTGGTCCTGTCAATAACCTGCAATTTTCTGGTGCTTTTGGGGCAGATGGGATTTTAGAAGGCAGTGTAGCTAAAGGGTGA MTSPARAEDTRKNEAEPLSLRNQILDVAPINSMPYIGPPLPHSYIPSSPQAEDPEAVVNVGPAMVYCPLTTRQEWDNIVSSTKSGVALTGTAAMGKVGPVIGRVDIGEDDNSYFFRVSLPGVARDQTDSFSCDMDPDGKVKIIGVTTTGENIVCKNSQVFRMQSKNLCPPGHFSITFQLPGPVNNLQFSGAFGADGILEGSVAKG
BLAST of Carg17555-RA vs. NCBI nr
Match: XP_022965940.1 (alpha-crystallin domain-containing protein 22.3-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 412.9 bits (1060), Expect = 6.3e-112 Identity = 201/205 (98.05%), Postives = 204/205 (99.51%), Query Frame = 0
BLAST of Carg17555-RA vs. NCBI nr
Match: XP_022938129.1 (alpha-crystallin domain-containing protein 22.3-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 411.4 bits (1056), Expect = 1.8e-111 Identity = 203/205 (99.02%), Postives = 204/205 (99.51%), Query Frame = 0
BLAST of Carg17555-RA vs. NCBI nr
Match: XP_022965941.1 (alpha-crystallin domain-containing protein 22.3-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 404.4 bits (1038), Expect = 2.2e-109 Identity = 199/205 (97.07%), Postives = 203/205 (99.02%), Query Frame = 0
BLAST of Carg17555-RA vs. NCBI nr
Match: XP_022938130.1 (alpha-crystallin domain-containing protein 22.3-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 402.9 bits (1034), Expect = 6.5e-109 Identity = 201/205 (98.05%), Postives = 203/205 (99.02%), Query Frame = 0
BLAST of Carg17555-RA vs. NCBI nr
Match: XP_011648803.1 (PREDICTED: uncharacterized protein LOC101211821 isoform X1 [Cucumis sativus] >KGN60888.1 hypothetical protein Csa_2G021590 [Cucumis sativus]) HSP 1 Score: 374.0 bits (959), Expect = 3.2e-100 Identity = 179/204 (87.75%), Postives = 195/204 (95.59%), Query Frame = 0
BLAST of Carg17555-RA vs. TAIR10
Match: AT1G54850.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 224.6 bits (571), Expect = 5.7e-59 Identity = 111/205 (54.15%), Postives = 154/205 (75.12%), Query Frame = 0
BLAST of Carg17555-RA vs. TAIR10
Match: AT1G54840.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 129.4 bits (324), Expect = 2.5e-30 Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 0
BLAST of Carg17555-RA vs. TAIR10
Match: AT1G20870.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 114.4 bits (285), Expect = 8.4e-26 Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 0
BLAST of Carg17555-RA vs. TAIR10
Match: AT1G76440.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 103.6 bits (257), Expect = 1.5e-22 Identity = 60/125 (48.00%), Postives = 75/125 (60.00%), Query Frame = 0
BLAST of Carg17555-RA vs. Swiss-Prot
Match: sp|Q84K79|IDM2L_ARATH (Alpha-crystallin domain-containing protein 22.3 OS=Arabidopsis thaliana OX=3702 GN=ACD22.3 PE=1 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 1.0e-57 Identity = 111/205 (54.15%), Postives = 154/205 (75.12%), Query Frame = 0
BLAST of Carg17555-RA vs. Swiss-Prot
Match: sp|Q8RWL4|IDM2_ARATH (Increased DNA methylation 2 OS=Arabidopsis thaliana OX=3702 GN=IDM2 PE=1 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 4.5e-29 Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 0
BLAST of Carg17555-RA vs. Swiss-Prot
Match: sp|Q9SYQ0|IDM3_ARATH (Increased DNA methylation 3 OS=Arabidopsis thaliana OX=3702 GN=IDM3 PE=1 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24 Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 0
BLAST of Carg17555-RA vs. TrEMBL
Match: tr|A0A0A0LGB8|A0A0A0LGB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021590 PE=3 SV=1) HSP 1 Score: 374.0 bits (959), Expect = 2.1e-100 Identity = 179/204 (87.75%), Postives = 195/204 (95.59%), Query Frame = 0
BLAST of Carg17555-RA vs. TrEMBL
Match: tr|A0A1S3C0B8|A0A1S3C0B8_CUCME (alpha-crystallin domain-containing protein 22.3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495185 PE=3 SV=1) HSP 1 Score: 371.7 bits (953), Expect = 1.1e-99 Identity = 178/204 (87.25%), Postives = 193/204 (94.61%), Query Frame = 0
BLAST of Carg17555-RA vs. TrEMBL
Match: tr|A0A1S3C0T3|A0A1S3C0T3_CUCME (alpha-crystallin domain-containing protein 22.3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495185 PE=3 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 3.8e-97 Identity = 176/204 (86.27%), Postives = 192/204 (94.12%), Query Frame = 0
BLAST of Carg17555-RA vs. TrEMBL
Match: tr|Q84KA6|Q84KA6_CUCME (Heat shock protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1) HSP 1 Score: 322.4 bits (825), Expect = 7.4e-85 Identity = 154/172 (89.53%), Postives = 165/172 (95.93%), Query Frame = 0
BLAST of Carg17555-RA vs. TrEMBL
Match: tr|A0A2P4JR50|A0A2P4JR50_QUESU (Alpha-crystallin domain-containing protein 22.3 OS=Quercus suber OX=58331 GN=CFP56_55902 PE=3 SV=1) HSP 1 Score: 279.3 bits (713), Expect = 7.2e-72 Identity = 136/207 (65.70%), Postives = 168/207 (81.16%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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