Carg16259-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAGAGAGAAATGACGTCGTCTTCGTTGGCGCGTTACCGCCGTTGGATTTCCCAGTTCAAATTCGCGTACTCTCAAACCAAGGCATTTCCCTCTCCGCCTTCGATCTCCTCCACCGCTGGACGCCATAACGATGATTCCGACGTTCCCAGCGGTCCGCCTCCGATACGAGTTTCGCTCACCGGTTCTGCCGGTCGTGGTGTATTCGCCACTCGCAAGATCGGCGCTGGAGATCTCATACACACAGCCAAACCACTTGTCGCTCATCCTTTGCTATCCTCTGTTCACCATGTGTGCAATTTCTGCTTGCGGAAGCTGCAGAGAAATGCTAATGCTAACGCTGATGCTCATCGTGCAACGTTTTGCTGCAAAGAGTGTGAACGAAATTCCAAGGTATCAATACGATATAATCTCTCGTTCTTTGATTAGTATGTTTTATGTTAGGTTAATCAGTTTTAGAAATTGTTTGATTCTTGATCTGTCTTGCGTTAATTCTATTTTGTGAAATCTCTAGCCGTTCTTACATGAATTAGTTTTTACCTGCGTATTTTAGTGTTGAATTGGCGGTTCGAATCCTTCGATAAAATCGAATTTATGAACTTATGTAAGACTAAATTGAACGTATAATTCTTTCTTTAGTTTAAATTGTCGCAGTACCTTCTTTATTCAGAAGATTTCGATTTTTGTCCGTTGTCCGCCATATGTTTGTTGTTTTGCTTCTGAAAGAACTTATTCTGCTAATCACACCATCATTTCATTTCGATTGATGTAAAAGCTGATGGAAATGTGGAAATAAAAGGAACTTTGATATAAAAAAAAATAGTAGTTCTGGAATAAATTTGATTTTAGTATCTAAATTTCTAGATTCTACATGATCGTCCAAAAGATTCGAGGTATAAAATGTTGAATGTCAAATCGTTTCCTTAGGTTATATATTTGACGTATCTTAATTTCAAAAGGATTAGTGCTTTTAAAAATCTAAATTTGAAATCAAGTAATACTTTTCAGTGTATTAGTTGTATAAATTATTTCTATTGTTCATTTCGATCAATTTCTTTAAATGTAATGAAGAACAGTATATCGTTAACAACAATAAATTATACATCTTTCAAATATTTTGAATTATAATGAACTGAAGTTGGAGAACTGTAATTCATCTTTGTCTTCTTTTATTATCTACACCATACATACTATCTTGTCTTAGAAATCAAATTTTTTCTAGGGAGGCATAAACTACAGTATTTCTTTTTCTGTCTAGGATTTTCTCGCCATAATTATCTGATTTTTGGAGTGAAAGAAATCTATTTATTCTGTTAGGTTGTTCATTTCGATCAATTTGTTCAAATGTAATGAAGAACAGTATATCGTTAACAACAATAAATTATACATCTTTCAAATATTTTGAATTATAATGAACTGAAGTTGGAGAACTGTAATTCATCTTTGTCTTCTTTTATTATCTACACCATACATACTATCTTGTCCTAGAAATCAATTTTTTTCTAGGGAGGCATAAACTACAGTTTTTTTTTTTTTTTTTTTTGTCTAGGATTTTCTCGCCATAATTATCTGATTTTTGGAGTGAAAGAAATCTATTTGTTCTGTTAGGTTTTTCATGATGTCGAAATGCAAGCAGATTGGTCAGACTACGACAAGAATTGCAGGTGCATTCAATTTTCGATCATTTATGTCACCAATTAATTCAATGTTACCCACGGTACATACATGCACACAAAAGTTTCTGCTTTATTGTAGTCGATACAATTATGATTAATTTGGAGTATCTGAAAAGAAAGCAAAAGATTTTTATTTTTTAAGGCTTGATGATGTGATTGATTTGTGGTATGGGCATGGAGTGTCCTCTTTAGTTTTATAGGCTTGACTTTCCAGTTGCATTGCTTAATTGTCTGTTTTTCTTTATCAAGTCGGACTCTTTGTCCTATTTCTGCTTTTTTCTTTTTCTTTTTGGTTATTTGTTTTTTTAGGGTAAAAAGGACGTTTTACTGTCACATTGGTAGATCTTTCTCAAGTCTATAATTTTACTGCACCCACCTTTTTTTTTGTTGGCCCCCAAAACCATGTCGGTGATTTGCTCTCCTCTTCTATTCTCTAGCTTTCCCCTTTTTGTTTTGGATGGCCAAATAAAATGTGCGTTAAGAATAATAGTCGAGGTATATTTAAAAGAATGTCTCAAGATTAGAGGTTCGAATTGCGGCCTCGTCGTGTTATTGAACTCAAAAAGAACAATTGTCAGTTTCATGGACAAAGATATGCAATCATTAGGAGACTATAATCTACAAAATTAATAATTCTTCCACAAAAAGAACGAAGAGATATGCCTAGATATATGCCAAGAGGAAGCTTTCTATGTTTATTTCTGAACCGAACTCAACTCTTCATATGTTAAACTACTGTCATCAGAATTTTGTGGAGCATTCATGGAATAATTTTGTACACGGGTATCTCTAGAAACCAATCAAGAGAAAACTATAAGACAGGATTAGTAATTAGCATGTAAATACAGGCTGTTTTTTTTTTTTTTTTTTCAATTCCATATGTGATTTGTTTTCTTCTTTTTTATCTTCTTCTAGATTTTCGAGAAATAAAATGCCTTGTATACTGATATTTCTCTCTAATATTCCAAGAAAATTAAACATGTAAAGGTAGAAAATCTCAACAAAATAATTAACATTCTGATAAACACGCACATGCCTTTCAATGTTCCCTCAACATGAAAAACTAGTTTGTAGTCGTACATATAACTTGACAAGTTGTTTCTGTTCATCTCTTTGTCAAGGGAGCGAGGCTTAAAATATCCTCTTTTGGTGAAGCGATTGGCTTGTATGGTCATATCTGGAGCTATATCTTCTGACCATCTTGACATACTTCAGCCTTCTAGTTTGTCTCCTCATATGGTTTCGGAGGTAAGATACTTCACTATTTTGATAATGTCATTTTGGATAAGTTATGATGATGGTCTCTCGTCTATCTCCAGCAGAGAGTACAAAATTTTGCCGTCATTACATTTAGGTTTATTTTGAAAGCGTTCTATTACATGAACTAACTGGCGATTCATATTTCACCTCATAAGCTTGCAACTTTTTCATTTTTAGCTTTGTAGGTTTAAGCTAGCGATCCATATTGTTTTAGTTCATTGAACTTTCAGCTAGAACGTTGATGGTATTCTTTGGCAAGCTCGATTTTGTTAGGGACTAGTTTAAGTTTGCATTGAATGTTAAATATGCATATATTTTCCAGTAGGAAGGAAGTCTGCAATATTATCAACAATTACTAAAAAAGGTCTTGAAACAAGTCTTATAAGAACTATATCACAGTCACAGGAACCCCATTTATAAGTGCCTCCAATCATAATCAATCAAAAAGATGAGTTTCTACCACTGAAATAGCGAGGCTCAATTTGAAGCATCAAGCTGAACTCCCACCTGCCATATAATCTTCTTCTTCTTTATTTATATTCAATGTCAATGATAGTCTATCTCTTATTTATTTATTTATTTATAAGTAAATAAAATAGATGTATATATTTTGTTTGAATTCTCGAATTACTATGTGAACACAGTTTTATTCATCTAAAAACTACAGTTAAAAGAAGGTTACAGCCTGCTGAGAAAAGCATTGGTCAACGCAAGCATCACAGACCAACAATTGCTCTGTATCCTACTACATGCTGGCAAAGATTTGTGACAATATTTCTTGTCATGCTATTCTTTCTTCTTCTTGTTGTTAACTTACATATTCCAAGTTCTAACTCAAGAATGGTACACTGGAGTTCTCACACGAATTCGTATTAATGCCTTTCGAATCGAATTGGTTGGAGGGTATGAGGATCTTCTTTCTCTTGCAGCAGCCTCTGTTGAAGCAGAAGCTGCTGTCGGGAATGCTGTTTACATGCTACCATCTTTCTATAATCACGACTGTGGTCAGTGCCCTTAACTTTTGCTTGCATGATTGCATCTTTTTTCTCATTCCACTTTTTACCCTCATGTTTAGTTCTTTTTTCCTGAGCATTGTCTTCTTAGTTGAAACATAAAATGCATCTAAGCTTTGAATTCATTAGTAGATGTCGATTACAGTTTAATGTTAGGAAAGATAACAGATTATGTAATGGGATTTGGGACATTAGGTATGTGTATATAATACGGGACAGAAAATCATATGTTAGCTAAGTACAATATCATGGCTGTGTCCATTGCAGATCCAAATACACACATTATATGGATAAACAATGCAAACGCGAGATTGAAGGCCCTCCGTGATGTTGAGCCCGGTAAGTTCGACTTTAATGTCTCTTTGACGTTATTTTCTCGTGTTTCAATATAAATTAAAGGTTGAGATACATTTGAGAAAAGCATAGGTAGAATCTAGCTGGCTATACATAAAACAAACGTTTTGATTTTGACACTGTAACTTGTTGAAAGAGATTTGTATTGTGGAATAGTCTGCTTTTTTATTTATCATAAACCTATCAAATCTCTGCAACCATGGCTGGATAAGCTCGTTTTCATGTTAAAAGAAAGTAACAATTATAGTATAACTACAGATGAAGAGCTACGGATCTGCTATATCGATGCAAGTATGGATCATGAGGCTCGGCGAACACTGCTATACCAGGGATTTGGTTTTATTTGCAACTGCGCCCGGTGTTCGTCTGGCGATTAAGTGAGATTATTCTCATATCTATAACTCTTTTCATATATAAAATGTTGATTTGAAACGACATTATTAACTCAAATAGATTAGACATCGATGAATATGGTTAGCTCTCTGGTTCCGCTTTTACAATACTAATGGATTGTGGAGAAGAATCAAGCCTGATTCCGTTGAGTTGATGTTGACCGTTTGCAAAATTAATTAGTTTCGACCGTTGTTTGCAAAATTAATTAGT GAGAGAGAAATGACGTCGTCTTCGTTGGCGCGTTACCGCCGTTGGATTTCCCAGTTCAAATTCGCGTACTCTCAAACCAAGGCATTTCCCTCTCCGCCTTCGATCTCCTCCACCGCTGGACGCCATAACGATGATTCCGACGTTCCCAGCGGTCCGCCTCCGATACGAGTTTCGCTCACCGGTTCTGCCGGTCGTGGTGTATTCGCCACTCGCAAGATCGGCGCTGGAGATCTCATACACACAGCCAAACCACTTGTCGCTCATCCTTTGCTATCCTCTGTTCACCATGTGTGCAATTTCTGCTTGCGGAAGCTGCAGAGAAATGCTAATGCTAACGCTGATGCTCATCGTGCAACGTTTTGCTGCAAAGAGTGTGAACGAAATTCCAAGGTTTTTCATGATGTCGAAATGCAAGCAGATTGGTCAGACTACGACAAGAATTGCAGGGAGCGAGGCTTAAAATATCCTCTTTTGGTGAAGCGATTGGCTTGTATGGTCATATCTGGAGCTATATCTTCTGACCATCTTGACATACTTCAGCCTTCTAGTTTGTCTCCTCATATGGTTTCGGAGGTAAGATACTTCACTATTTTGATAATGTCATTTTGGATAAGTTATGATGATGTTCTAACTCAAGAATGGTACACTGGAGTTCTCACACGAATTCGTATTAATGCCTTTCGAATCGAATTGGTTGGAGGGTATGAGGATCTTCTTTCTCTTGCAGCAGCCTCTGTTGAAGCAGAAGCTGCTGTCGGGAATGCTGTTTACATGCTACCATCTTTCTATAATCACGACTGTGATCCAAATACACACATTATATGGATAAACAATGCAAACGCGAGATTGAAGGCCCTCCGTGATGTTGAGCCCGATGAAGAGCTACGGATCTGCTATATCGATGCAAGTATGGATCATGAGGCTCGGCGAACACTGCTATACCAGGGATTTGGTTTTATTTGCAACTGCGCCCGGTGTTCGTCTGGCGATTAAGTGAGATTATTCTCATATCTATAACTCTTTTCATATATAAAATGTTGATTTGAAACGACATTATTAACTCAAATAGATTAGACATCGATGAATATGGTTAGCTCTCTGGTTCCGCTTTTACAATACTAATGGATTGTGGAGAAGAATCAAGCCTGATTCCGTTGAGTTGATGTTGACCGTTTGCAAAATTAATTAGTTTCGACCGTTGTTTGCAAAATTAATTAGT GAGAGAGAAATGACGTCGTCTTCGTTGGCGCGTTACCGCCGTTGGATTTCCCAGTTCAAATTCGCGTACTCTCAAACCAAGGCATTTCCCTCTCCGCCTTCGATCTCCTCCACCGCTGGACGCCATAACGATGATTCCGACGTTCCCAGCGGTCCGCCTCCGATACGAGTTTCGCTCACCGGTTCTGCCGGTCGTGGTGTATTCGCCACTCGCAAGATCGGCGCTGGAGATCTCATACACACAGCCAAACCACTTGTCGCTCATCCTTTGCTATCCTCTGTTCACCATGTGTGCAATTTCTGCTTGCGGAAGCTGCAGAGAAATGCTAATGCTAACGCTGATGCTCATCGTGCAACGTTTTGCTGCAAAGAGTGTGAACGAAATTCCAAGGTTTTTCATGATGTCGAAATGCAAGCAGATTGGTCAGACTACGACAAGAATTGCAGGGAGCGAGGCTTAAAATATCCTCTTTTGGTGAAGCGATTGGCTTGTATGGTCATATCTGGAGCTATATCTTCTGACCATCTTGACATACTTCAGCCTTCTAGTTTGTCTCCTCATATGGTTTCGGAGGTAAGATACTTCACTATTTTGATAATGTCATTTTGGATAAGTTATGATGATGTTCTAACTCAAGAATGGTACACTGGAGTTCTCACACGAATTCGTATTAATGCCTTTCGAATCGAATTGGTTGGAGGGTATGAGGATCTTCTTTCTCTTGCAGCAGCCTCTGTTGAAGCAGAAGCTGCTGTCGGGAATGCTGTTTACATGCTACCATCTTTCTATAATCACGACTGTGATCCAAATACACACATTATATGGATAAACAATGCAAACGCGAGATTGAAGGCCCTCCGTGATGTTGAGCCCGATGAAGAGCTACGGATCTGCTATATCGATGCAAGTATGGATCATGAGGCTCGGCGAACACTGCTATACCAGGGATTTGGTTTTATTTGCAACTGCGCCCGGTGTTCGTCTGGCGATTAA EREMTSSSLARYRRWISQFKFAYSQTKAFPSPPSISSTAGRHNDDSDVPSGPPPIRVSLTGSAGRGVFATRKIGAGDLIHTAKPLVAHPLLSSVHHVCNFCLRKLQRNANANADAHRATFCCKECERNSKVFHDVEMQADWSDYDKNCRERGLKYPLLVKRLACMVISGAISSDHLDILQPSSLSPHMVSEVRYFTILIMSFWISYDDVLTQEWYTGVLTRIRINAFRIELVGGYEDLLSLAAASVEAEAAVGNAVYMLPSFYNHDCDPNTHIIWINNANARLKALRDVEPDEELRICYIDASMDHEARRTLLYQGFGFICNCARCSSGD
BLAST of Carg16259-RA vs. NCBI nr
Match: XP_022938746.1 (LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATXR4-like [Cucurbita moschata]) HSP 1 Score: 624.4 bits (1609), Expect = 2.2e-175 Identity = 311/336 (92.56%), Postives = 317/336 (94.35%), Query Frame = 0
BLAST of Carg16259-RA vs. NCBI nr
Match: XP_023005897.1 (LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATXR4 [Cucurbita maxima]) HSP 1 Score: 604.4 bits (1557), Expect = 2.4e-169 Identity = 302/336 (89.88%), Postives = 312/336 (92.86%), Query Frame = 0
BLAST of Carg16259-RA vs. NCBI nr
Match: XP_023538797.1 (LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATXR4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 585.5 bits (1508), Expect = 1.1e-163 Identity = 294/336 (87.50%), Postives = 301/336 (89.58%), Query Frame = 0
BLAST of Carg16259-RA vs. NCBI nr
Match: KGN59269.1 (hypothetical protein Csa_3G797580 [Cucumis sativus]) HSP 1 Score: 511.5 bits (1316), Expect = 2.1e-141 Identity = 254/336 (75.60%), Postives = 282/336 (83.93%), Query Frame = 0
BLAST of Carg16259-RA vs. NCBI nr
Match: XP_011652069.1 (PREDICTED: histone-lysine N-methyltransferase ATXR4 isoform X1 [Cucumis sativus]) HSP 1 Score: 508.8 bits (1309), Expect = 1.4e-140 Identity = 253/335 (75.52%), Postives = 281/335 (83.88%), Query Frame = 0
BLAST of Carg16259-RA vs. TAIR10
Match: AT5G06620.1 (SET domain protein 38) HSP 1 Score: 362.5 bits (929), Expect = 2.8e-100 Identity = 191/323 (59.13%), Postives = 232/323 (71.83%), Query Frame = 0
BLAST of Carg16259-RA vs. TAIR10
Match: AT2G19640.2 (ASH1-related protein 2) HSP 1 Score: 70.5 bits (171), Expect = 2.2e-12 Identity = 69/296 (23.31%), Postives = 126/296 (42.57%), Query Frame = 0
BLAST of Carg16259-RA vs. TAIR10
Match: AT3G21820.1 (histone-lysine N-methyltransferase ATXR2) HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06 Identity = 27/82 (32.93%), Postives = 42/82 (51.22%), Query Frame = 0
BLAST of Carg16259-RA vs. Swiss-Prot
Match: sp|Q9FG08|ATXR4_ARATH (Histone-lysine N-methyltransferase ATXR4 OS=Arabidopsis thaliana OX=3702 GN=ATXR4 PE=2 SV=2) HSP 1 Score: 362.5 bits (929), Expect = 5.1e-99 Identity = 191/323 (59.13%), Postives = 232/323 (71.83%), Query Frame = 0
BLAST of Carg16259-RA vs. Swiss-Prot
Match: sp|Q54D67|Y2454_DICDI (SET and MYND domain-containing protein DDB_G0292454 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0292454 PE=3 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 5.6e-13 Identity = 65/285 (22.81%), Postives = 121/285 (42.46%), Query Frame = 0
BLAST of Carg16259-RA vs. Swiss-Prot
Match: sp|Q9H7B4|SMYD3_HUMAN (Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens OX=9606 GN=SMYD3 PE=1 SV=4) HSP 1 Score: 75.9 bits (185), Expect = 9.6e-13 Identity = 75/293 (25.60%), Postives = 123/293 (41.98%), Query Frame = 0
BLAST of Carg16259-RA vs. Swiss-Prot
Match: sp|Q5A1M3|SET5_CANAL (Potential protein lysine methyltransferase SET5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=SET5 PE=3 SV=2) HSP 1 Score: 71.2 bits (173), Expect = 2.4e-11 Identity = 87/364 (23.90%), Postives = 145/364 (39.84%), Query Frame = 0
BLAST of Carg16259-RA vs. Swiss-Prot
Match: sp|Q9ZUM9|ASHR2_ARATH (Histone-lysine N-methyltransferase ASHR2 OS=Arabidopsis thaliana OX=3702 GN=ASHR2 PE=2 SV=3) HSP 1 Score: 70.5 bits (171), Expect = 4.0e-11 Identity = 69/296 (23.31%), Postives = 126/296 (42.57%), Query Frame = 0
BLAST of Carg16259-RA vs. TrEMBL
Match: tr|A0A0A0LEB8|A0A0A0LEB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797580 PE=4 SV=1) HSP 1 Score: 511.5 bits (1316), Expect = 1.4e-141 Identity = 254/336 (75.60%), Postives = 282/336 (83.93%), Query Frame = 0
BLAST of Carg16259-RA vs. TrEMBL
Match: tr|A0A1S3B6K3|A0A1S3B6K3_CUCME (histone-lysine N-methyltransferase ATXR4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486738 PE=4 SV=1) HSP 1 Score: 493.4 bits (1269), Expect = 3.9e-136 Identity = 251/336 (74.70%), Postives = 276/336 (82.14%), Query Frame = 0
BLAST of Carg16259-RA vs. TrEMBL
Match: tr|A0A2I4GY67|A0A2I4GY67_9ROSI (histone-lysine N-methyltransferase ATXR4 isoform X1 OS=Juglans regia OX=51240 GN=LOC109011916 PE=4 SV=1) HSP 1 Score: 404.1 bits (1037), Expect = 3.1e-109 Identity = 217/331 (65.56%), Postives = 247/331 (74.62%), Query Frame = 0
BLAST of Carg16259-RA vs. TrEMBL
Match: tr|A0A2P6RD91|A0A2P6RD91_ROSCH (Putative histone-lysine N-methyltransferase chromatin remodeling SET family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0478741 PE=4 SV=1) HSP 1 Score: 389.4 bits (999), Expect = 7.9e-105 Identity = 195/326 (59.82%), Postives = 242/326 (74.23%), Query Frame = 0
BLAST of Carg16259-RA vs. TrEMBL
Match: tr|D7TI91|D7TI91_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g07110 PE=4 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 6.7e-104 Identity = 201/308 (65.26%), Postives = 234/308 (75.97%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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