Carg16206 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAAGAACAAAGAAATGCATGATCATATTCTTGATTATCATTTTAGTTTTAGTTCTTCTTTCATTGTTAATCGTCTGGCTCATCACCATGGCTAACAAGATCAAATTCCATGTGATCGACGCCGACCTGACCCAATTCAACTTCACCGACGACAAGCAACTCCTGTTCGACCTGACCGTGAACATGAAAGTCAAAAACCCTAATCGTGCGTTCGGAGTTTTTTTCGATCGCATCGAAGTGACCGTGTTGTATCAAGACATAAAGTTTAGTAACGCGTCACTGTCGCCTTTCTACCAAGACCAAGATGGGTCGAAGCTGCTGAAATTGAAGTTTGATGGTCAGCAATTGATGAACCTCAACGCTGAGCAGCTGGCTGTGTTTGGTCTGGAGAAGCTTGTTGAGACCTTCACCCTTAAATTGGAGCTTCGTCCTTCAGATAAGAGTGAATATTGATCTCATTAAGATCAAACTCAAGCCCAAGGTGCGTTGTGGCCTTAATCTTCCCTTGATTTCTCGTGGAAGAACGTTTCTACGCTTCCAGATTATCGGCTGCCATGTCGCTTATTGA ATGTCAAGAACAAAGAAATGCATGATCATATTCTTGATTATCATTTTAGTTTTAGTTCTTCTTTCATTGTTAATCGTCTGGCTCATCACCATGGCTAACAAGATCAAATTCCATGTGATCGACGCCGACCTGACCCAATTCAACTTCACCGACGACAAGCAACTCCTGTTCGACCTGACCGTGAACATGAAAGTCAAAAACCCTAATCGTGCGTTCGGAGTTTTTTTCGATCGCATCGAAGTGACCGTGTTGTATCAAGACATAAAGTTTAGTAACGCGTCACTGTCGCCTTTCTACCAAGACCAAGATGGGTCGAAGCTGCTGAAATTGAAGTTTGATGGTCAGCAATTGATGAACCTCAACGCTGAGCAGCTGGCTGTGTTTGGTCTGGAGAAGCTTGTTGAGACCTTCACCCTTAAATTGGAGCTTCTGAATATTGATCTCATTAAGATCAAACTCAAGCCCAAGGTGCGTTGTGGCCTTAATCTTCCCTTGATTTCTCGTGGAAGAACGTTTCTACGCTTCCAGATTATCGGCTGCCATGTCGCTTATTGA ATGTCAAGAACAAAGAAATGCATGATCATATTCTTGATTATCATTTTAGTTTTAGTTCTTCTTTCATTGTTAATCGTCTGGCTCATCACCATGGCTAACAAGATCAAATTCCATGTGATCGACGCCGACCTGACCCAATTCAACTTCACCGACGACAAGCAACTCCTGTTCGACCTGACCGTGAACATGAAAGTCAAAAACCCTAATCGTGCGTTCGGAGTTTTTTTCGATCGCATCGAAGTGACCGTGTTGTATCAAGACATAAAGTTTAGTAACGCGTCACTGTCGCCTTTCTACCAAGACCAAGATGGGTCGAAGCTGCTGAAATTGAAGTTTGATGGTCAGCAATTGATGAACCTCAACGCTGAGCAGCTGGCTGTGTTTGGTCTGGAGAAGCTTGTTGAGACCTTCACCCTTAAATTGGAGCTTCTGAATATTGATCTCATTAAGATCAAACTCAAGCCCAAGGTGCGTTGTGGCCTTAATCTTCCCTTGATTTCTCGTGGAAGAACGTTTCTACGCTTCCAGATTATCGGCTGCCATGTCGCTTATTGA MSRTKKCMIIFLIIILVLVLLSLLIVWLITMANKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKFSNASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLELLNIDLIKIKLKPKVRCGLNLPLISRGRTFLRFQIIGCHVAY
BLAST of Carg16206 vs. NCBI nr
Match: XP_023005830.1 (NDR1/HIN1-like protein 3 [Cucurbita maxima]) HSP 1 Score: 264.2 bits (674), Expect = 3.2e-67 Identity = 158/189 (83.60%), Postives = 160/189 (84.66%), Query Frame = 0
BLAST of Carg16206 vs. NCBI nr
Match: XP_022957840.1 (NDR1/HIN1-like protein 3 [Cucurbita moschata]) HSP 1 Score: 261.5 bits (667), Expect = 2.1e-66 Identity = 160/189 (84.66%), Postives = 160/189 (84.66%), Query Frame = 0
BLAST of Carg16206 vs. NCBI nr
Match: XP_008443593.1 (PREDICTED: NDR1/HIN1-Like protein 3-like [Cucumis melo]) HSP 1 Score: 211.8 bits (538), Expect = 1.9e-51 Identity = 107/159 (67.30%), Postives = 127/159 (79.87%), Query Frame = 0
BLAST of Carg16206 vs. NCBI nr
Match: KGN59193.1 (hypothetical protein Csa_3G778980 [Cucumis sativus]) HSP 1 Score: 207.6 bits (527), Expect = 3.6e-50 Identity = 106/161 (65.84%), Postives = 125/161 (77.64%), Query Frame = 0
BLAST of Carg16206 vs. NCBI nr
Match: XP_004136710.1 (PREDICTED: protein YLS9-like [Cucumis sativus]) HSP 1 Score: 205.7 bits (522), Expect = 1.4e-49 Identity = 105/159 (66.04%), Postives = 123/159 (77.36%), Query Frame = 0
BLAST of Carg16206 vs. TAIR10
Match: AT2G35980.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) HSP 1 Score: 88.2 bits (217), Expect = 5.8e-18 Identity = 54/151 (35.76%), Postives = 83/151 (54.97%), Query Frame = 0
BLAST of Carg16206 vs. TAIR10
Match: AT5G06320.1 (NDR1/HIN1-like 3) HSP 1 Score: 85.5 bits (210), Expect = 3.7e-17 Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 0
BLAST of Carg16206 vs. TAIR10
Match: AT3G11650.1 (NDR1/HIN1-like 2) HSP 1 Score: 78.6 bits (192), Expect = 4.6e-15 Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 0
BLAST of Carg16206 vs. TAIR10
Match: AT1G32270.1 (syntaxin, putative) HSP 1 Score: 77.8 bits (190), Expect = 7.8e-15 Identity = 40/140 (28.57%), Postives = 73/140 (52.14%), Query Frame = 0
BLAST of Carg16206 vs. TAIR10
Match: AT2G35460.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) HSP 1 Score: 74.3 bits (181), Expect = 8.6e-14 Identity = 48/162 (29.63%), Postives = 83/162 (51.23%), Query Frame = 0
BLAST of Carg16206 vs. Swiss-Prot
Match: sp|Q9SJ52|NHL10_ARATH (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.0e-16 Identity = 54/151 (35.76%), Postives = 83/151 (54.97%), Query Frame = 0
BLAST of Carg16206 vs. Swiss-Prot
Match: sp|Q9FNH6|NHL3_ARATH (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 6.7e-16 Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 0
BLAST of Carg16206 vs. Swiss-Prot
Match: sp|Q9SRN1|NHL2_ARATH (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 8.2e-14 Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 0
BLAST of Carg16206 vs. Swiss-Prot
Match: sp|Q9C615|SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13 Identity = 40/140 (28.57%), Postives = 73/140 (52.14%), Query Frame = 0
BLAST of Carg16206 vs. TrEMBL
Match: tr|A0A1S3B7X9|A0A1S3B7X9_CUCME (NDR1/HIN1-Like protein 3-like OS=Cucumis melo OX=3656 GN=LOC103487149 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51 Identity = 107/159 (67.30%), Postives = 127/159 (79.87%), Query Frame = 0
BLAST of Carg16206 vs. TrEMBL
Match: tr|A0A0A0LBJ3|A0A0A0LBJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778980 PE=4 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 2.4e-50 Identity = 106/161 (65.84%), Postives = 125/161 (77.64%), Query Frame = 0
BLAST of Carg16206 vs. TrEMBL
Match: tr|A5AZX3|A5AZX3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034236 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 3.8e-24 Identity = 64/162 (39.51%), Postives = 94/162 (58.02%), Query Frame = 0
BLAST of Carg16206 vs. TrEMBL
Match: tr|A0A2P5FHZ9|A0A2P5FHZ9_9ROSA (Late embryogenesis abundant protein OS=Trema orientalis OX=63057 GN=TorRG33x02_068770 PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 6.5e-24 Identity = 66/155 (42.58%), Postives = 94/155 (60.65%), Query Frame = 0
BLAST of Carg16206 vs. TrEMBL
Match: tr|A0A2P5D9X6|A0A2P5D9X6_PARAD (Late embryogenesis abundant protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_082630 PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 6.5e-24 Identity = 66/155 (42.58%), Postives = 94/155 (60.65%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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