Carg00451 (gene) Silver-seed gourd

NameCarg00451
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEthylene-responsive transcription factor
LocationCucurbita_argyrosperma_scaffold_001 : 2543524 .. 2544656 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTATTCGAGGAAGTTCAGGGGAGTTAGGCAGCGGCAGTGGGGCTCGTGGGTGTCAGAAATCCGCCACCCATTGCTGTAAAATCCCCTTTTCATTACGTTTTTTTGGTTCTTCTGCTATAAATATATGCGCCGTTGATCGGGTTTGTTGGTTTAAAAATGCTCTGTATAACCATTTTTTGTCTGGCGCCCATAAACTGTTTGATGATTTGCCTGAAAGAGACCTGGCGGTGGCGCCATGGATTTTTAAACCTCATTGTTGTTGTAAATATGTGTGTTCTTGCTTGTGTTGTTTTGGTTCAGAAATGCTCTGAAATCCCATGTTTTGTCTGGCGCCCATAACCTGTTTGATGATTTGCCTGAAAGAGACCTGGCGATGGCGGCATGGATTTTTAAACTTCATTGTTGTTGTAAATATGCGTGTTATTGCTTGTGTTGTTTTGGTTCACAAAAGCTCTGAAATCCCATGTTTTGTCTGGTGCCCATAACCTGTTTGTTGATATGACTGAAAGAAGCTGAGCGGCCATGGCGTTGGCATGCGTATCTATGTGTTCTTGGTTGTGATTTGGAACTACATTACATCATGAGCGCACATCCTTATATTGTTCATGTGTTTTTCTTTGTAGGAAAAGAAGGGTGTGGCTAGGGACATTCGACACCGCAGAGGATGCAGCACGAGCATATGATCAAGCATCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCGAAAGACCGATCTGAAGAAGCCAGCCATGGCCATGGGGCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGGAAGTGCTGCAAGAACCCTTCTCCCTCCTTGACATGCCTGCGACTCGACAGTGACAATGCCCACATCGGCGTCTGGCAGAAGCGTGCAGGCACTCGAGCAGCCTCCGATTGGGTCATGAGGATTGAGTTAGGAAAGAAGGAGACACCGTCGCCGTCGATGTCCCTGTCCCCGTTGCCCGAACCTGCAAGCCAGGAAGCTGAAGGCCGCCAAAATGGGATTGATGAAGAAGACAGAATTGCAATGCAAATGATCGAAGAGTTGCTGAGTTGGAACTGCCCTCTTCCTTCAACTTCAAGCTAG

mRNA sequence

ATGGTTTATTCGAGGAAGTTCAGGGGAGTTAGGCAGCGGCAGTGGGGCTCGTGGGTGTCAGAAATCCGCCACCCATTGCTGAAAAGAAGGGTGTGGCTAGGGACATTCGACACCGCAGAGGATGCAGCACGAGCATATGATCAAGCATCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCGAAAGACCGATCTGAAGAAGCCAGCCATGGCCATGGGGCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGGAAGTGCTGCAAGAACCCTTCTCCCTCCTTGACATGCCTGCGACTCGACAGTGACAATGCCCACATCGGCGTCTGGCAGAAGCGTGCAGGCACTCGAGCAGCCTCCGATTGGGTCATGAGGATTGAGTTAGGAAAGAAGGAGACACCGTCGCCGTCGATGTCCCTGTCCCCGTTGCCCGAACCTGCAAGCCAGGAAGCTGAAGGCCGCCAAAATGGGATTGATGAAGAAGACAGAATTGCAATGCAAATGATCGAAGAGTTGCTGAGTTGGAACTGCCCTCTTCCTTCAACTTCAAGCTAG

Coding sequence (CDS)

ATGGTTTATTCGAGGAAGTTCAGGGGAGTTAGGCAGCGGCAGTGGGGCTCGTGGGTGTCAGAAATCCGCCACCCATTGCTGAAAAGAAGGGTGTGGCTAGGGACATTCGACACCGCAGAGGATGCAGCACGAGCATATGATCAAGCATCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCGAAAGACCGATCTGAAGAAGCCAGCCATGGCCATGGGGCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGGAAGTGCTGCAAGAACCCTTCTCCCTCCTTGACATGCCTGCGACTCGACAGTGACAATGCCCACATCGGCGTCTGGCAGAAGCGTGCAGGCACTCGAGCAGCCTCCGATTGGGTCATGAGGATTGAGTTAGGAAAGAAGGAGACACCGTCGCCGTCGATGTCCCTGTCCCCGTTGCCCGAACCTGCAAGCCAGGAAGCTGAAGGCCGCCAAAATGGGATTGATGAAGAAGACAGAATTGCAATGCAAATGATCGAAGAGTTGCTGAGTTGGAACTGCCCTCTTCCTTCAACTTCAAGCTAG

Protein sequence

MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKTNFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIEELLSWNCPLPSTSS
BLAST of Carg00451 vs. NCBI nr
Match: XP_022940113.1 (ethylene-responsive transcription factor SHINE 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 391.7 bits (1005), Expect = 1.4e-105
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW
Sbjct: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180
           QKRAGTRAASDWVMRIELGKKETP PSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE
Sbjct: 121 QKRAGTRAASDWVMRIELGKKETPPPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180

Query: 181 ELLSWNCPLPSTSS 195
           ELLSWNCPLPSTSS
Sbjct: 181 ELLSWNCPLPSTSS 194

BLAST of Carg00451 vs. NCBI nr
Match: XP_022981248.1 (ethylene-responsive transcription factor SHINE 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 386.7 bits (992), Expect = 4.6e-104
Identity = 191/194 (98.45%), Postives = 191/194 (98.45%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPASKDRSEEASHGH ASPLSPK LSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW
Sbjct: 61  NFPASKDRSEEASHGHSASPLSPKTLSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180
           QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEG QNGIDEEDRIAMQMIE
Sbjct: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGCQNGIDEEDRIAMQMIE 180

Query: 181 ELLSWNCPLPSTSS 195
           ELLSWNCPLPSTSS
Sbjct: 181 ELLSWNCPLPSTSS 194

BLAST of Carg00451 vs. NCBI nr
Match: XP_023524391.1 (ethylene-responsive transcription factor SHINE 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.1 bits (980), Expect = 1.1e-102
Identity = 190/194 (97.94%), Postives = 191/194 (98.45%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPASKDRSE  SHGHGASPLSPKALSELLSTKL+KCCKNPSPSLTCLRLDSDNAHIGVW
Sbjct: 61  NFPASKDRSE--SHGHGASPLSPKALSELLSTKLKKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180
           QKRAGTRAASDWVMRIELGKKETPSPSM LSPLPEPASQEAEGRQNGIDEEDRIAMQMIE
Sbjct: 121 QKRAGTRAASDWVMRIELGKKETPSPSMPLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180

Query: 181 ELLSWNCPLPSTSS 195
           ELLSWNCPLPSTSS
Sbjct: 181 ELLSWNCPLPSTSS 192

BLAST of Carg00451 vs. NCBI nr
Match: XP_022936544.1 (ethylene-responsive transcription factor SHINE 2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 348.2 bits (892), Expect = 1.8e-92
Identity = 171/194 (88.14%), Postives = 180/194 (92.78%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQA+ILMNGQNAKT
Sbjct: 6   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 65

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPASKD+S EASHGHG+SP++PKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW
Sbjct: 66  NFPASKDQSAEASHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 125

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180
           QKRAGTRA S+WVMRIELGKKE PSP     P PE  SQE +G +NGIDEEDRIAMQMIE
Sbjct: 126 QKRAGTRATSNWVMRIELGKKEIPSP----LPSPESTSQEPDGHRNGIDEEDRIAMQMIE 185

Query: 181 ELLSWNCPLPSTSS 195
           ELL+WNCPLPS SS
Sbjct: 186 ELLNWNCPLPSISS 195

BLAST of Carg00451 vs. NCBI nr
Match: XP_022936545.1 (ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita moschata] >XP_022936547.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita moschata] >XP_022936548.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita moschata] >XP_022936549.1 ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 348.2 bits (892), Expect = 1.8e-92
Identity = 171/194 (88.14%), Postives = 180/194 (92.78%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQA+ILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPASKD+S EASHGHG+SP++PKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW
Sbjct: 61  NFPASKDQSAEASHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180
           QKRAGTRA S+WVMRIELGKKE PSP     P PE  SQE +G +NGIDEEDRIAMQMIE
Sbjct: 121 QKRAGTRATSNWVMRIELGKKEIPSP----LPSPESTSQEPDGHRNGIDEEDRIAMQMIE 180

Query: 181 ELLSWNCPLPSTSS 195
           ELL+WNCPLPS SS
Sbjct: 181 ELLNWNCPLPSISS 190

BLAST of Carg00451 vs. TAIR10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 228.8 bits (582), Expect = 2.9e-60
Identity = 114/188 (60.64%), Postives = 142/188 (75.53%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAE AARAYDQA++LMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFP  K     +   + A   SPK+LSELL+ KLRK CK+ +P LTCLRLD+D++HIGVW
Sbjct: 61  NFPVIKSNGSNSLEINSAL-RSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVW 120

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180
           QKRAG++ + +WV  +ELG K    P   +       + + + R   + E+D++AMQMIE
Sbjct: 121 QKRAGSKTSPNWVKLVELGDKVNARPGGDIE------TNKMKVRNEDVQEDDQMAMQMIE 180

Query: 181 ELLSWNCP 189
           ELL+W CP
Sbjct: 181 ELLNWTCP 181

BLAST of Carg00451 vs. TAIR10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-57
Identity = 116/189 (61.38%), Postives = 141/189 (74.60%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MV+SRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQA++LMNGQNAKT
Sbjct: 1   MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query: 61  NFPASKDRSEEASHGHGASPL-SPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGV 120
           NFP  K            SPL SPK+LSELL+ KLRK CK+ +PSLTCLRLD+D++HIGV
Sbjct: 61  NFPVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGV 120

Query: 121 WQKRAGTRAASDWVMRIELGKKETPSP-SMSLSPL-PEPASQEAEGRQNGIDEEDRIAMQ 180
           WQKRAG++ +  WVMR+ELG     S   + L+ +  +              +ED++AM+
Sbjct: 121 WQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEXXXXXXXXXXSDEDQLAME 180

Query: 181 MIEELLSWN 187
           MIEELL+W+
Sbjct: 181 MIEELLNWS 189

BLAST of Carg00451 vs. TAIR10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-52
Identity = 106/199 (53.27%), Postives = 138/199 (69.35%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MV ++KFRGVRQR WGSWV+EIRHPLLKRR+WLGTF+TAE+AARAYD+A++LM+G+NAKT
Sbjct: 1   MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query: 61  NFPASKDRSEEASH--------GHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 120
           NFP + + + E S                           KLRKCCK+PSPSLTCLRLD+
Sbjct: 61  NFPLNNNNTGETSEXXXXXXXXXXXXXXXXXXXXXXXXXAKLRKCCKSPSPSLTCLRLDT 120

Query: 121 DNAHIGVWQKRAGTRAASDWVMRIELG----KKETPSPSMSLSPLPEPASQEAEG-RQNG 180
            ++HIGVWQKRAG+++ S WVM +ELG     +ET S +   + L      E  G R+  
Sbjct: 121 ASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVEIGGSREEV 180

Query: 181 IDEEDRIAMQMIEELLSWN 187
           +DEE+++A+QMIEELL+ N
Sbjct: 181 LDEEEKVALQMIEELLNTN 199

BLAST of Carg00451 vs. TAIR10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKTNFPA 64
          ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAEDAARAYD+A+ LM G  A+TNFP 
Sbjct: 6  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP- 65

Query: 65 SKDRSEEASHGHGASPL-SPKALSELLSTKLRKC 98
                   +   A P  S K LS  L+ KL KC
Sbjct: 66 ---------YNPNAIPTSSSKLLSATLTAKLHKC 89

BLAST of Carg00451 vs. TAIR10
Match: AT4G11140.1 (cytokinin response factor 1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-17
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 4   SRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKTNFP 63
           +RKFRGVRQR WG W +EIR P  + RVWLGTFDTAE+AA  YD A+I + G NA+ NFP
Sbjct: 84  TRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143

Query: 64  AS--KDRSEEAS 74
                +  EEAS
Sbjct: 144 PPPVTENVEEAS 155

BLAST of Carg00451 vs. Swiss-Prot
Match: sp|Q3E958|SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.2e-59
Identity = 114/188 (60.64%), Postives = 142/188 (75.53%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAE AARAYDQA++LMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFP  K     +   + A   SPK+LSELL+ KLRK CK+ +P LTCLRLD+D++HIGVW
Sbjct: 61  NFPVIKSNGSNSLEINSAL-RSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGVW 120

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180
           QKRAG++ + +WV  +ELG K    P   +       + + + R   + E+D++AMQMIE
Sbjct: 121 QKRAGSKTSPNWVKLVELGDKVNARPGGDIE------TNKMKVRNEDVQEDDQMAMQMIE 180

Query: 181 ELLSWNCP 189
           ELL+W CP
Sbjct: 181 ELLNWTCP 181

BLAST of Carg00451 vs. Swiss-Prot
Match: sp|Q9LFN7|SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.8e-56
Identity = 116/189 (61.38%), Postives = 141/189 (74.60%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MV+SRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQA++LMNGQNAKT
Sbjct: 1   MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query: 61  NFPASKDRSEEASHGHGASPL-SPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGV 120
           NFP  K            SPL SPK+LSELL+ KLRK CK+ +PSLTCLRLD+D++HIGV
Sbjct: 61  NFPVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGV 120

Query: 121 WQKRAGTRAASDWVMRIELGKKETPSP-SMSLSPL-PEPASQEAEGRQNGIDEEDRIAMQ 180
           WQKRAG++ +  WVMR+ELG     S   + L+ +  +              +ED++AM+
Sbjct: 121 WQKRAGSKTSPTWVMRLELGNVVNESAVDLGLTTMNKQNVEXXXXXXXXXXSDEDQLAME 180

Query: 181 MIEELLSWN 187
           MIEELL+W+
Sbjct: 181 MIEELLNWS 189

BLAST of Carg00451 vs. Swiss-Prot
Match: sp|Q9XI33|WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.0e-51
Identity = 106/199 (53.27%), Postives = 138/199 (69.35%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MV ++KFRGVRQR WGSWV+EIRHPLLKRR+WLGTF+TAE+AARAYD+A++LM+G+NAKT
Sbjct: 1   MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query: 61  NFPASKDRSEEASH--------GHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDS 120
           NFP + + + E S                           KLRKCCK+PSPSLTCLRLD+
Sbjct: 61  NFPLNNNNTGETSEXXXXXXXXXXXXXXXXXXXXXXXXXAKLRKCCKSPSPSLTCLRLDT 120

Query: 121 DNAHIGVWQKRAGTRAASDWVMRIELG----KKETPSPSMSLSPLPEPASQEAEG-RQNG 180
            ++HIGVWQKRAG+++ S WVM +ELG     +ET S +   + L      E  G R+  
Sbjct: 121 ASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVEIGGSREEV 180

Query: 181 IDEEDRIAMQMIEELLSWN 187
           +DEE+++A+QMIEELL+ N
Sbjct: 181 LDEEEKVALQMIEELLNTN 199

BLAST of Carg00451 vs. Swiss-Prot
Match: sp|Q94AW5|ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-22
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKTNFPA 64
          ++FRGVRQR WGSWVSEIRHPLLK R+WLGTF+TAEDAARAYD+A+ LM G  A+TNFP 
Sbjct: 6  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP- 65

Query: 65 SKDRSEEASHGHGASPL-SPKALSELLSTKLRKC 98
                   +   A P  S K LS  L+ KL KC
Sbjct: 66 ---------YNPNAIPTSSSKLLSATLTAKLHKC 89

BLAST of Carg00451 vs. Swiss-Prot
Match: sp|P16146|PZ02_LUPPO (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 0

Query: 5  RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKTNFPA 64
          +++RG RQR WGSWVSEIRH +LK R+W GTF++AEDAARAYD+A+ LM G  A+TNFP 
Sbjct: 6  QRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRARTNFPY 65

Query: 65 SKDRSEEASHGHGASPLSPKALSELLSTKLRKC 98
          + + S+ +         S K LS  L  KL +C
Sbjct: 66 NPNASQSS---------SSKLLSATLIAKLHRC 89

BLAST of Carg00451 vs. TrEMBL
Match: tr|A0A1S3CR71|A0A1S3CR71_CUCME (ethylene-responsive transcription factor SHINE 2-like OS=Cucumis melo OX=3656 GN=LOC103503822 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 8.0e-89
Identity = 168/196 (85.71%), Postives = 178/196 (90.82%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFD+AEDAARAYDQA+ILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDSAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPASKD+SEEASHGHG+SP+SPKALSELLSTKLRKCCKNPSPSLTCLRLDSD AHIGVW
Sbjct: 61  NFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDTAHIGVW 120

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEG--RQNGIDEEDRIAMQM 180
           QKRAGTRA S+WVMRIELGKKE PS   +       + QEA+G   QN IDEEDRIAMQM
Sbjct: 121 QKRAGTRATSNWVMRIELGKKEVPSSEST-------SCQEADGDDHQNEIDEEDRIAMQM 180

Query: 181 IEELLSWNCPLPSTSS 195
           IEELL+WNCPLPSTSS
Sbjct: 181 IEELLNWNCPLPSTSS 189

BLAST of Carg00451 vs. TrEMBL
Match: tr|A0A0A0LJA8|A0A0A0LJA8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878210 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.1e-85
Identity = 161/194 (82.99%), Postives = 166/194 (85.57%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQA+ILMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFPASKD SEEASHGHG+SP+SPKALSELLSTKLRKCCKNPSPSLTCLRLD DNAHIGVW
Sbjct: 61  NFPASKDHSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDCDNAHIGVW 120

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180
           QKRAGTRA S+WVMRIELGKKE PS                        EEDRIAMQMIE
Sbjct: 121 QKRAGTRATSNWVMRIELGKKEVPSXXXXXXXXXXXXXXXXXXXXXXXXEEDRIAMQMIE 180

Query: 181 ELLSWNCPLPSTSS 195
           ELL+WNCPLPSTSS
Sbjct: 181 ELLNWNCPLPSTSS 194

BLAST of Carg00451 vs. TrEMBL
Match: tr|A0A2I4ES46|A0A2I4ES46_9ROSI (ethylene-responsive transcription factor SHINE 3-like OS=Juglans regia OX=51240 GN=LOC108992195 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 4.4e-71
Identity = 142/191 (74.35%), Postives = 159/191 (83.25%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MV+S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQA+ILM+GQNAKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMSGQNAKT 60

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFP +  R E+ +   G SPLSPKALSELLSTKLRKCCK+  PSLTCLRLD+DN+HIGVW
Sbjct: 61  NFPTANGRHED-TKACGDSPLSPKALSELLSTKLRKCCKDQYPSLTCLRLDADNSHIGVW 120

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPLPEPASQEAEGRQNGIDEEDRIAMQMIE 180
           QKRAG R+AS+WVMRIELGKK+T +   SLS        E     NG+DEED IAMQMIE
Sbjct: 121 QKRAGARSASNWVMRIELGKKQTQTLEDSLS--SGSPRVEIHDAGNGMDEEDSIAMQMIE 180

Query: 181 ELLSWNCPLPS 192
           ELL+WNCP PS
Sbjct: 181 ELLNWNCPAPS 188

BLAST of Carg00451 vs. TrEMBL
Match: tr|A0A1U8NKZ9|A0A1U8NKZ9_GOSHI (ethylene-responsive transcription factor SHINE 2-like OS=Gossypium hirsutum OX=3635 GN=LOC107949342 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.4e-69
Identity = 135/196 (68.88%), Postives = 158/196 (80.61%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MV ++KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQA+ILMNGQNAKT
Sbjct: 1   MVQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFP +    ++       SPL PKALSELL+ KL+KCCK+ SPSLTCLRLD+DNAHIGVW
Sbjct: 61  NFPPATAHKDD-------SPLPPKALSELLNAKLKKCCKDQSPSLTCLRLDTDNAHIGVW 120

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPL--PEPASQEAEGRQNGIDEEDRIAMQM 180
           QKRAGTR++S WVMR++LG K+T +P     P     P + E EG  + + EEDRIA+QM
Sbjct: 121 QKRAGTRSSSSWVMRVDLGNKKTTTPPSEDGPALSSPPIADEIEGESHVLGEEDRIALQM 180

Query: 181 IEELLSWNCPLPSTSS 195
           IEELL+WNCP+ STSS
Sbjct: 181 IEELLNWNCPMVSTSS 189

BLAST of Carg00451 vs. TrEMBL
Match: tr|A0A0D2PK81|A0A0D2PK81_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G292600 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.4e-69
Identity = 135/196 (68.88%), Postives = 158/196 (80.61%), Query Frame = 0

Query: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQASILMNGQNAKT 60
           MV ++KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQA+ILMNGQNAKT
Sbjct: 1   MVQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKT 60

Query: 61  NFPASKDRSEEASHGHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVW 120
           NFP +    ++       SPL PKALSELL+ KL+KCCK+ SPSLTCLRLD+DNAHIGVW
Sbjct: 61  NFPPATAHKDD-------SPLPPKALSELLNAKLKKCCKDQSPSLTCLRLDTDNAHIGVW 120

Query: 121 QKRAGTRAASDWVMRIELGKKETPSPSMSLSPL--PEPASQEAEGRQNGIDEEDRIAMQM 180
           QKRAGTR++S WVMR++LG K+T +P     P     P + E EG  + + EEDRIA+QM
Sbjct: 121 QKRAGTRSSSSWVMRVDLGNKKTTTPPSEDGPALSSPPIADEIEGESHVLGEEDRIALQM 180

Query: 181 IEELLSWNCPLPSTSS 195
           IEELL+WNCP+ STSS
Sbjct: 181 IEELLNWNCPMVSTSS 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022940113.11.4e-10599.48ethylene-responsive transcription factor SHINE 2-like isoform X1 [Cucurbita mosc... [more]
XP_022981248.14.6e-10498.45ethylene-responsive transcription factor SHINE 2-like isoform X1 [Cucurbita maxi... [more]
XP_023524391.11.1e-10297.94ethylene-responsive transcription factor SHINE 2-like [Cucurbita pepo subsp. pep... [more]
XP_022936544.11.8e-9288.14ethylene-responsive transcription factor SHINE 2 isoform X1 [Cucurbita moschata][more]
XP_022936545.11.8e-9288.14ethylene-responsive transcription factor SHINE 2 isoform X2 [Cucurbita moschata]... [more]
Match NameE-valueIdentityDescription
AT5G25390.22.9e-6060.64Integrase-type DNA-binding superfamily protein[more]
AT5G11190.11.0e-5761.38Integrase-type DNA-binding superfamily protein[more]
AT1G15360.12.2e-5253.27Integrase-type DNA-binding superfamily protein[more]
AT5G25190.15.7e-2460.64Integrase-type DNA-binding superfamily protein[more]
AT4G11140.11.8e-1759.72cytokinin response factor 1[more]
Match NameE-valueIdentityDescription
sp|Q3E958|SHN3_ARATH5.2e-5960.64Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702... [more]
sp|Q9LFN7|SHN2_ARATH1.8e-5661.38Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702... [more]
sp|Q9XI33|WIN1_ARATH4.0e-5153.27Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q94AW5|ERF03_ARATH1.0e-2260.64Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|P16146|PZ02_LUPPO1.1e-1952.69Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A1S3CR71|A0A1S3CR71_CUCME8.0e-8985.71ethylene-responsive transcription factor SHINE 2-like OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0LJA8|A0A0A0LJA8_CUCSA3.1e-8582.99Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878210 PE=4 SV=1[more]
tr|A0A2I4ES46|A0A2I4ES46_9ROSI4.4e-7174.35ethylene-responsive transcription factor SHINE 3-like OS=Juglans regia OX=51240 ... [more]
tr|A0A1U8NKZ9|A0A1U8NKZ9_GOSHI1.4e-6968.88ethylene-responsive transcription factor SHINE 2-like OS=Gossypium hirsutum OX=3... [more]
tr|A0A0D2PK81|A0A0D2PK81_GOSRA1.4e-6968.88Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G292600 PE=4 ... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom_sf
IPR036955AP2/ERF_dom_sf
IPR001471AP2/ERF_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00451-RACarg00451-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 7..18
score: 60.91
coord: 29..45
score: 72.19
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 6..69
e-value: 9.8E-38
score: 141.4
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 6..54
e-value: 4.7E-11
score: 42.7
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 6..63
score: 21.575
IPR001471AP2/ERF domainCDDcd00018AP2coord: 6..65
e-value: 2.56811E-32
score: 111.595
IPR036955AP2/ERF domain superfamilyGENE3DG3DSA:3.30.730.10coord: 5..65
e-value: 4.9E-29
score: 101.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..170
NoneNo IPR availablePANTHERPTHR31194:SF13ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2-RELATEDcoord: 1..186
NoneNo IPR availablePANTHERPTHR31194SHN SHINE , DNA BINDING / TRANSCRIPTION FACTORcoord: 1..186
IPR016177DNA-binding domain superfamilySUPERFAMILYSSF54171DNA-binding domaincoord: 6..65

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00451Cla020969Watermelon (97103) v1carwmB0670
Carg00451Csa3G878210Cucumber (Chinese Long) v2carcuB0686
Carg00451MELO3C003695Melon (DHL92) v3.5.1carmeB0667
Carg00451MELO3C010341Melon (DHL92) v3.5.1carmeB0664
Carg00451ClCG05G016930Watermelon (Charleston Gray)carwcgB0650
Carg00451ClCG11G003080Watermelon (Charleston Gray)carwcgB0646
Carg00451CSPI03G43980Wild cucumber (PI 183967)carcpiB0698
Carg00451Cucsa.310360Cucumber (Gy14) v1carcgyB0754
Carg00451CmaCh01G015020Cucurbita maxima (Rimu)carcmaB0947
Carg00451CmaCh09G004610Cucurbita maxima (Rimu)carcmaB0935
Carg00451CmaCh11G005470Cucurbita maxima (Rimu)carcmaB0937
Carg00451CmoCh11G005450Cucurbita moschata (Rifu)carcmoB0911
Carg00451CmoCh01G015590Cucurbita moschata (Rifu)carcmoB0922
Carg00451CmoCh09G004700Cucurbita moschata (Rifu)carcmoB0909
Carg00451Lsi04G021330Bottle gourd (USVL1VR-Ls)carlsiB611
Carg00451Lsi11G003200Bottle gourd (USVL1VR-Ls)carlsiB600
Carg00451Cp4.1LG02g04240Cucurbita pepo (Zucchini)carcpeB0943
Carg00451Cp4.1LG06g03420Cucurbita pepo (Zucchini)carcpeB0950
Carg00451Cp4.1LG04g09380Cucurbita pepo (Zucchini)carcpeB0945
Carg00451CsGy3G041470Cucumber (Gy14) v2carcgybB0661
Carg00451MELO3C003695.2Melon (DHL92) v3.6.1carmedB0679
Carg00451MELO3C010341.2Melon (DHL92) v3.6.1carmedB0675
Carg00451CsaV3_3G046440Cucumber (Chinese Long) v3carcucB0700
Carg00451Cla97C11G209540Watermelon (97103) v2carwmbB0691
Carg00451Cla97C05G098050Watermelon (97103) v2carwmbB0699
Carg00451Bhi09G001934Wax gourdcarwgoB0790
Carg00451Bhi02G000828Wax gourdcarwgoB0792
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00451Carg02885Silver-seed gourdcarcarB555