Carg13963-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13963-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	LOB domain-containing protein, putative
Location	Cucurbita_argyrosperma_scaffold_042 : 1032350 .. 1034256 (+)
Sequence length	819

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCCATCCACCACCACCACCCTCCTCCCCACCACCACCACCACCTCTCCAAATCCACCTCCGCCGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGCCACCACTCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTTGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATATTCCAATCCGACGTCCGATCCCTCGATCCGGTCGGCGGATGTTACCGCATCATTCGCGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAGCTCGAGATCGTGCTTCATCAATTGGCGATCTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCGATTCTGGACGCGGATCATCCTATGAGTGGAGGATACGCCGGAATCGAGCACCAATTTGTGGAGGAAGGATTCGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGAGGTTTGGGGGATTCAGGCTTCCCAAATCTCGCCCTGTTCTTCCTTCAAATCCTCTGTTCATGATTTTGATCATGTCGATATTCATTATCATCATCAACAATTTGTTAGGTTTCATCCGGATCATCATCAGTTTCTTCCTAAGAGGTCAGTTTCTTCTCTTTTTCATTTTTATTCTAATTTATAATTTTAATGTTACAAATTATATATATAAATTGATTGATTCATCATATTTGGCGCCAACCTACGTTCTGGAATTTATTTTTATATTTTATTCCAAATAACTTGCTTCAAGCCTGGCCCATAACCATAGTCCATAAATAACCTAATAAGCTCCAAACGCCCAATTTTGGAAACCTAGAGGTCCAATGCCCGATTTTGCAGACTTTTACAAATAAAATTAACTTAACAAATGGTTCCAAGAAGGAGCAGATTAGAACGATGAATAACTTTTAGGTACAATTTGGAATCTATGTGGCCACTCTTAGATTGCAAAACGACTCACTCCACAATTAACTTGATCATGACTCATCCACTGAATCAAAGTCAATGGACTTTAACCTCAAACCCAAAGAAAGGTTCGAAAGAAAGAATCATAACAAAACACAACGTTTTTTTTTATTCCACGTATAAATTACCCATAGAAGGTTCTAAATACAAATTTAAGAAAAGAAGGATAAATAGTTTTAATTGGTAGTTTGAAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTCTAATCACCTTCAAACCACATTGGTGTTTACGGTAACTAGATTATTCTATTGATTTAATATGCTATATAAAGATTTTTGGGCCTCACTGAATGGAAGAGTATTCCTTCATTATAAACTCATGATCATTCCCTAAGTTAGCCGAAGTGGTTAGCCAATGTGAGATTTTCATCGTCAACGGTTTGAACTTGTAAATTTGCTAGATTTGAAGATATAATATATAAGTATCTTGAATCTTCTTTACTTTCGATACATCAATTTTGACGAGTGATTGGATTCATATCATAACCCAATGGATCAGGCCTTTTCAGTATTTTTAATATATTAAAATTTTGTAATTATTAATTTTCATAAGCAAAAGAATATAGCTTTAAAAATTTAAATTAAATTGTGCAGTGAGGAAGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGATTCAGAGCCATTGCAAAATGACCAAGATGGAGAGGTTAAAGGTGCAGTAAATAATTTATTTACCTTCCCAACCACCCTCTGATACTTACCTTCTTCTTTACTTTTTTACTTTTAAAATTTTTTTTTTTTTATTTAGTCCTAA

mRNA sequence

ATGACCTCCATCCACCACCACCACCCTCCTCCCCACCACCACCACCACCTCTCCAAATCCACCTCCGCCGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGCCACCACTCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTTGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATATTCCAATCCGACGTCCGATCCCTCGATCCGGTCGGCGGATGTTACCGCATCATTCGCGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAGCTCGAGATCGTGCTTCATCAATTGGCGATCTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCGATTCTGGACGCGGATCATCCTATGAGTGGAGGATACGCCGGAATCGAGCACCAATTTGTGGAGGAAGGATTCGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGAGGTTTGGGGGATTCAGGCTTCCCAAATCTCGCCCTGTTCTTCCTTCAAATCCTCTGTTCATGATTTTGATCATGTCGATATTCATTATCATCATCAACAATTTGTTAGGTTTCATCCGGATCATCATCAGTTTCTTCCTAAGAGTGAGGAAGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGATTCAGAGCCATTGCAAAATGACCAAGATGGAGAGTCCTAA

Coding sequence (CDS)

ATGACCTCCATCCACCACCACCACCCTCCTCCCCACCACCACCACCACCTCTCCAAATCCACCTCCGCCGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGCCACCACTCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTTGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATATTCCAATCCGACGTCCGATCCCTCGATCCGGTCGGCGGATGTTACCGCATCATTCGCGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAGCTCGAGATCGTGCTTCATCAATTGGCGATCTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCGATTCTGGACGCGGATCATCCTATGAGTGGAGGATACGCCGGAATCGAGCACCAATTTGTGGAGGAAGGATTCGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGAGGTTTGGGGGATTCAGGCTTCCCAAATCTCGCCCTGTTCTTCCTTCAAATCCTCTGTTCATGATTTTGATCATGTCGATATTCATTATCATCATCAACAATTTGTTAGGTTTCATCCGGATCATCATCAGTTTCTTCCTAAGAGTGAGGAAGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGATTCAGAGCCATTGCAAAATGACCAAGATGGAGAGTCCTAA

Protein sequence

MTSIHHHHPPPHHHHHLSKSTSAVSSSSSSSSSTATTQACAACKYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADHPMSGGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQASQISPCSSFKSSVHDFDHVDIHYHHQQFVRFHPDHHQFLPKSEEEAGMVEIDNVILKEDSEPLQNDQDGES

Homology

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BLAST of Carg13963-RA vs. NCBI nr
Match: XP_022964078.1 (protein IAL1-like, partial [Cucurbita moschata])

HSP 1 Score: 454.1 bits (1167), Expect = 3.3e-124
Identity = 225/228 (98.68%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS
Sbjct: 23  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 82

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADHPMS 163
           DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADHPMS
Sbjct: 83  DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADHPMS 142

Query: 164 GGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQASQISPCSSFKSSVHDFDHVDIH 223
           GGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQASQISPCSSFKSSVHDFDHVDIH
Sbjct: 143 GGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQASQISPCSSFKSSVHDFDHVDIH 202

Query: 224 YHHQQFVRFHPDHHQFLPKSEEEAGMVEIDNVILKEDSEPLQNDQDGE 272
           YHHQQFVRFHPDHHQFL KSE EAGMVEIDNVILKEDSEP+QNDQDGE
Sbjct: 203 YHHQQFVRFHPDHHQFLHKSEVEAGMVEIDNVILKEDSEPMQNDQDGE 250

[Close]

BLAST of Carg13963-RA vs. NCBI nr
Match: XP_023000636.1 (uncharacterized protein LOC111494882 [Cucurbita maxima])

HSP 1 Score: 429.1 bits (1102), Expect = 1.1e-116
Identity = 212/228 (92.98%), Postives = 223/228 (97.81%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS
Sbjct: 40  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 99

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADHPMS 163
           DVRSLDPVGGCYRIIRDLQRQIQYSKAELE+VLHQLAICKHQAAASVSAAAILDADHPMS
Sbjct: 100 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEMVLHQLAICKHQAAASVSAAAILDADHPMS 159

Query: 164 GGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQASQISPCSSFKSSVHDFDHVDIH 223
           GG++GIE+QFVEEGFVIGENENAESLDDEAAEVWGIQAS+ISPCSS KSS+HDFDH++IH
Sbjct: 160 GGFSGIENQFVEEGFVIGENENAESLDDEAAEVWGIQASEISPCSSLKSSIHDFDHINIH 219

Query: 224 YHHQQFVRFHPDHHQFLPKSEEEAGMVEIDNVILKEDSEPLQNDQDGE 272
           YHHQQFV+FHPDHHQFL KS EEAGMVEIDNVILKEDSEP+QND + E
Sbjct: 220 YHHQQFVKFHPDHHQFLHKS-EEAGMVEIDNVILKEDSEPMQNDGEVE 266

[Close]

BLAST of Carg13963-RA vs. NCBI nr
Match: XP_023514493.1 (LOB domain-containing protein 28-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385.6 bits (989), Expect = 1.4e-103
Identity = 198/230 (86.09%), Postives = 203/230 (88.26%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS
Sbjct: 18  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 77

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQ-LAICKHQAAASVSAAAILDADHPM 163
           DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQ                   DADHPM
Sbjct: 78  DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQXXXXXXXXXXXXXXXXXXXDADHPM 137

Query: 164 SGGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQASQISPCSSFKSSVHDFDHVDI 223
           S    GIEHQFVEEGFVIGENENAESLDDEAA+VWGIQASQISPC SFKSSVHDFDH++I
Sbjct: 138 S----GIEHQFVEEGFVIGENENAESLDDEAADVWGIQASQISPCFSFKSSVHDFDHINI 197

Query: 224 HYHHQQFVRFHPDHHQFL-PKSEEEAGMVEIDNVILKEDSEPLQNDQDGE 272
           HYHHQQFV+FHPDHHQFL   SEEEAGMVEIDNVILKEDSEP+QNDQDGE
Sbjct: 198 HYHHQQFVKFHPDHHQFLHNNSEEEAGMVEIDNVILKEDSEPMQNDQDGE 243

[Close]

BLAST of Carg13963-RA vs. NCBI nr
Match: KGN45524.1 (hypothetical protein Csa_7G451300 [Cucumis sativus])

HSP 1 Score: 275.4 bits (703), Expect = 2.1e-70
Identity = 157/244 (64.34%), Postives = 174/244 (71.31%), Query Frame = 0


Query: 45  YQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSD 104
           YQRRKC PDCILAPYFPH RQRQFLNAHKLFGVSNITKIIKNLDPF+KEEAMRTIIFQSD
Sbjct: 36  YQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSD 95

Query: 105 VRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADH--PM 164
           VRS+DPVGGCYRIIRDLQRQI+Y+KAELEIVLHQLAICK                   PM
Sbjct: 96  VRSVDPVGGCYRIIRDLQRQIEYNKAELEIVLHQLAICKXXXXXXXXXXXXXXXXEGDPM 155

Query: 165 SGGYAGIEHQFVE----EGFVIGENENAESLDDEAAEVWGIQASQISPCSSFK----SSV 224
           + GY GIEHQFVE    EGFV+GENEN ESL+D+  EVWGIQ S    CSS +     SV
Sbjct: 156 T-GYGGIEHQFVEGYEGEGFVVGENENGESLEDQEVEVWGIQDS----CSSLQLKQAGSV 215

Query: 225 HDFDHVDIH-------YHHQQFVRFHPDHHQFLPKSEEEAGMVEIDNVILKEDSEPLQND 272
           HDF  + IH              +F  DHHQ L    EE  M+++DN+ILKEDS+P+Q  
Sbjct: 216 HDFHDIKIHDXXXXXXXXXXXXXKFQIDHHQDLVHQSEEP-MLKMDNMILKEDSDPIQQV 273

[Close]

BLAST of Carg13963-RA vs. NCBI nr
Match: XP_022991793.1 (LOB domain-containing protein 29-like [Cucurbita maxima])

HSP 1 Score: 257.7 bits (657), Expect = 4.5e-65
Identity = 155/251 (61.75%), Postives = 176/251 (70.12%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           KYQRRKC PDCILAPYFPH RQRQFLNAHKLFGVSNITKIIKNLDPF+KEEAMRTIIFQS
Sbjct: 36  KYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQS 95

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADHPMS 163
           DVRS+DPVGGCYRIIRDLQ QI+Y K EL+ VL QLA+CK QAAA+ +A AIL+AD PMS
Sbjct: 96  DVRSMDPVGGCYRIIRDLQLQIEYIKTELDFVLSQLALCKQQAAAA-AAVAILEAD-PMS 155

Query: 164 GGYAGIEHQFVE----EGFVIGENENAESLDDEAAEVWGIQASQISPCSSFK----SSVH 223
            GY G+EHQFVE    EGFV+GENEN E+L+D+  EVWGIQ S    CSS +     SV 
Sbjct: 156 -GYGGLEHQFVEGYGGEGFVVGENENRETLEDQEVEVWGIQDS----CSSLQLKPAGSVQ 215

Query: 224 DFDHVDI---------------HYHHQQFVRFHPDHHQFLPKSEEEAGMVEIDNVILKED 272
           DF  + I                              Q L    EEA M+++DNV+LKE 
Sbjct: 216 DFHDIKIDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDLVHQSEEA-MLKMDNVMLKE- 275

[Close]

BLAST of Carg13963-RA vs. TAIR10
Match: AT3G13850.1 (LOB domain-containing protein 22)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-37
Identity = 73/103 (70.87%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           KYQRRKC PDC+LAPYFPH R RQFLNAHKLFGVSNITKIIK+L P +K+ AM TI+FQS
Sbjct: 41  KYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQS 100

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQA 147
           D R+ DPV GCY II+ LQ QI+Y++ ELEIVL QLA+ + +A
Sbjct: 101 DARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRDRA 143

[Close]

BLAST of Carg13963-RA vs. TAIR10
Match: AT1G72980.1 (LOB domain-containing protein 7)

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-24
Identity = 50/103 (48.54%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           K+QR+KC  +CILA YFP     +FLNAHKLFGVSNITK++K ++  Q++ AM  +I+ +
Sbjct: 18  KHQRKKCKKNCILARYFPQDGTNKFLNAHKLFGVSNITKMLKRIEESQRDIAMENLIYHA 77

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQA 147
           + R+LDPVGG YR I DL+ +I++ + EL +   Q+ +C+  A
Sbjct: 78  NARALDPVGGVYRTICDLKCKIEFVQTELNLTRQQIDMCRSLA 120

[Close]

BLAST of Carg13963-RA vs. TAIR10
Match: AT3G47870.1 (LOB domain-containing protein 27)

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-22
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           KYQRR+C  DC LAPYFP  + + F N H+LFGV +I KI++ LD  QK EAM++IIFQS
Sbjct: 41  KYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEAMKSIIFQS 100

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAI 142
            VR   PV GC  + + LQ  I +++ EL+ V  QL +
Sbjct: 101 YVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVNSQLQL 138

[Close]

BLAST of Carg13963-RA vs. TAIR10
Match: AT1G65620.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-20
Identity = 43/109 (39.45%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           K+ RRKC P+C+ APYFP  + ++F N HK+FG SN+TK++  L P Q+E+A+ ++ +++
Sbjct: 14  KFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLAYEA 73

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSA 153
           D+R  DPV GC  +I  LQ Q++  + +L     +L+  K+Q+   ++A
Sbjct: 74  DMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELS--KYQSLGILAA 120

[Close]

BLAST of Carg13963-RA vs. TAIR10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 95.9 bits (237), Expect = 4.1e-20
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           K+ RRKC+P CI APYFP     +F N HK+FG SN+TK++  L P Q+E+A+ ++ +++
Sbjct: 16  KFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEA 75

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAA 155
           + R  DPV GC   I  LQRQ+   + EL+     LA   H   ++ +A A
Sbjct: 76  EARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLA---HYGLSTSAAGA 123

[Close]

BLAST of Carg13963-RA vs. Swiss-Prot
Match: sp|Q9LRW1|LBD22_ARATH (LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.3e-36
Identity = 73/103 (70.87%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           KYQRRKC PDC+LAPYFPH R RQFLNAHKLFGVSNITKIIK+L P +K+ AM TI+FQS
Sbjct: 41  KYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQS 100

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQA 147
           D R+ DPV GCY II+ LQ QI+Y++ ELEIVL QLA+ + +A
Sbjct: 101 DARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRDRA 143

[Close]

BLAST of Carg13963-RA vs. Swiss-Prot
Match: sp|Q9SSM9|LBD7_ARATH (LOB domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=LBD7 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-23
Identity = 50/103 (48.54%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           K+QR+KC  +CILA YFP     +FLNAHKLFGVSNITK++K ++  Q++ AM  +I+ +
Sbjct: 18  KHQRKKCKKNCILARYFPQDGTNKFLNAHKLFGVSNITKMLKRIEESQRDIAMENLIYHA 77

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQA 147
           + R+LDPVGG YR I DL+ +I++ + EL +   Q+ +C+  A
Sbjct: 78  NARALDPVGGVYRTICDLKCKIEFVQTELNLTRQQIDMCRSLA 120

[Close]

BLAST of Carg13963-RA vs. Swiss-Prot
Match: sp|Q9STS6|LBD27_ARATH (LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-21
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           KYQRR+C  DC LAPYFP  + + F N H+LFGV +I KI++ LD  QK EAM++IIFQS
Sbjct: 41  KYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEAMKSIIFQS 100

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAI 142
            VR   PV GC  + + LQ  I +++ EL+ V  QL +
Sbjct: 101 YVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVNSQLQL 138

[Close]

BLAST of Carg13963-RA vs. Swiss-Prot
Match: sp|Q32SG3|LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.0e-21
Identity = 45/108 (41.67%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           K+ RRKC PDC+ APYFP    ++F++ H++FG SN+TK++  L PFQ+E+A+ ++ +++
Sbjct: 38  KFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEA 97

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVS 152
           D+R  DPV GC  +I  LQ  ++  + +L    ++L+  K+QAAA+ S
Sbjct: 98  DMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELS--KYQAAAAAS 143

[Close]

BLAST of Carg13963-RA vs. Swiss-Prot
Match: sp|A1YKY7|IAL1_MAIZE (Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.9e-20
Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           K+ RRKC PDC+ APYFP    ++F+  H++FG SN+TK++  + P Q+E+AM ++ +++
Sbjct: 38  KFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDAMNSLAYEA 97

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADHPM- 163
           D+R  DPV GC  +I  LQ  ++  + +L    ++L+  K+QAAA+ S +        M 
Sbjct: 98  DMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELS--KYQAAAAASXSTAPTGPQAMA 157

Query: 164 ----SGGYAGIEHQFVEEG 178
               S    G  H F+  G
Sbjct: 158 EFIGSAMPNGAAHNFINLG 174

[Close]

BLAST of Carg13963-RA vs. TrEMBL
Match: tr|A0A0A0K9M3|A0A0A0K9M3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451300 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 157/244 (64.34%), Postives = 174/244 (71.31%), Query Frame = 0


Query: 45  YQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSD 104
           YQRRKC PDCILAPYFPH RQRQFLNAHKLFGVSNITKIIKNLDPF+KEEAMRTIIFQSD
Sbjct: 36  YQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSD 95

Query: 105 VRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADH--PM 164
           VRS+DPVGGCYRIIRDLQRQI+Y+KAELEIVLHQLAICK                   PM
Sbjct: 96  VRSVDPVGGCYRIIRDLQRQIEYNKAELEIVLHQLAICKXXXXXXXXXXXXXXXXEGDPM 155

Query: 165 SGGYAGIEHQFVE----EGFVIGENENAESLDDEAAEVWGIQASQISPCSSFK----SSV 224
           + GY GIEHQFVE    EGFV+GENEN ESL+D+  EVWGIQ S    CSS +     SV
Sbjct: 156 T-GYGGIEHQFVEGYEGEGFVVGENENGESLEDQEVEVWGIQDS----CSSLQLKQAGSV 215

Query: 225 HDFDHVDIH-------YHHQQFVRFHPDHHQFLPKSEEEAGMVEIDNVILKEDSEPLQND 272
           HDF  + IH              +F  DHHQ L    EE  M+++DN+ILKEDS+P+Q  
Sbjct: 216 HDFHDIKIHDXXXXXXXXXXXXXKFQIDHHQDLVHQSEEP-MLKMDNMILKEDSDPIQQV 273

[Close]

BLAST of Carg13963-RA vs. TrEMBL
Match: tr|A0A1S4E3M5|A0A1S4E3M5_CUCME (LOB domain-containing protein 22 OS=Cucumis melo OX=3656 GN=LOC103500724 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 129/173 (74.57%), Postives = 138/173 (79.77%), Query Frame = 0


Query: 45  YQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSD 104
           YQRRKC PDCILAPYFPH RQRQFLNAHKLFGVSNITKIIKNLDPF+KEEAMRTIIFQSD
Sbjct: 39  YQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSD 98

Query: 105 VRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADH--PM 164
           VRS+DPVGGCYRIIRDLQRQI+Y+KAELEIVLHQLAICK                   PM
Sbjct: 99  VRSVDPVGGCYRIIRDLQRQIEYNKAELEIVLHQLAICKXXXXXXXXXXXXXXXXEGDPM 158

Query: 165 SGGYAGIEHQFVE----EGFVIGENENAESLDDEAAEVWGIQASQISPCSSFK 212
           S GY+GIEHQFVE    EGFV+GENEN ESL+D+  EVWGIQ S    CSS +
Sbjct: 159 S-GYSGIEHQFVEGYEGEGFVVGENENGESLEDQEVEVWGIQDSS---CSSLQ 207

[Close]

BLAST of Carg13963-RA vs. TrEMBL
Match: tr|A0A2P5QCU5|A0A2P5QCU5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33538 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.4e-45
Identity = 102/190 (53.68%), Postives = 128/190 (67.37%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           KYQRRKC PDCILAPYFPH RQRQF NAHKLFGVSNITKIIKNL+P +K+ AMRTI+FQS
Sbjct: 19  KYQRRKCAPDCILAPYFPHDRQRQFQNAHKLFGVSNITKIIKNLNPPEKDIAMRTIVFQS 78

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDAD---- 163
           D R+ DPVGGCYRII++LQRQI+YS+AEL++VLHQLAIC+ QAA    +   L  D    
Sbjct: 79  DARANDPVGGCYRIIQELQRQIEYSQAELDLVLHQLAICRAQAAQQQHSDLTLGCDMINP 138

Query: 164 ----HPMSGGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQ--ASQISPCSSFKSS 223
               +  +  Y  ++    EE F + +N     L +     WGIQ   S +S  +  +S 
Sbjct: 139 QDPLNSYNSNYYYVQEPH-EELFAVNDNNQQHQLQENYDHSWGIQESTSALSTLNIKQSF 198

[Close]

BLAST of Carg13963-RA vs. TrEMBL
Match: tr|A0A0D2VJ03|A0A0D2VJ03_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G064500 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.4e-45
Identity = 102/190 (53.68%), Postives = 128/190 (67.37%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           KYQRRKC PDCILAPYFPH RQRQF NAHKLFGVSNITKIIKNL+P +K+ AMRTI+FQS
Sbjct: 19  KYQRRKCAPDCILAPYFPHDRQRQFQNAHKLFGVSNITKIIKNLNPPEKDIAMRTIVFQS 78

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDAD---- 163
           D R+ DPVGGCYRII++LQRQI+YS+AEL++VLHQLAIC+ QAA    +   L  D    
Sbjct: 79  DARANDPVGGCYRIIQELQRQIEYSQAELDLVLHQLAICRAQAAQQQHSDLTLGCDMINP 138

Query: 164 ----HPMSGGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQ--ASQISPCSSFKSS 223
               +  +  Y  ++    EE F + +N     L +     WGIQ   S +S  +  +S 
Sbjct: 139 QDPLNSYNSNYYYVQEPH-EELFAVNDNNQQHQLQENYDHSWGIQESTSALSTLNIKQSF 198

[Close]

BLAST of Carg13963-RA vs. TrEMBL
Match: tr|A0A1U8KIZ9|A0A1U8KIZ9_GOSHI (LOB domain-containing protein 22-like OS=Gossypium hirsutum OX=3635 GN=LOC107916012 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.8e-45
Identity = 102/190 (53.68%), Postives = 128/190 (67.37%), Query Frame = 0


Query: 44  KYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQS 103
           KYQRRKC PDCILAPYFPH RQRQF NAHKLFGVSNITKIIKNL+P +K+ AMRTI+FQS
Sbjct: 19  KYQRRKCAPDCILAPYFPHDRQRQFQNAHKLFGVSNITKIIKNLNPPEKDIAMRTIVFQS 78

Query: 104 DVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDAD---- 163
           D R+ DPVGGCYRII++LQRQI+YS+AEL++VLHQLAIC+ QAA    +   L  D    
Sbjct: 79  DARANDPVGGCYRIIQELQRQIEYSQAELDLVLHQLAICRAQAAQQQHSDLTLGCDMINP 138

Query: 164 ----HPMSGGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQAS--QISPCSSFKSS 223
               +  +  Y  ++    EE F + +N     L +     WGIQ S   +S  +  +S 
Sbjct: 139 QDPLNSYNSNYYYVQEPH-EELFAVNDNNQQHQLQENYDHSWGIQESTTALSTLNIKQSF 198

The following BLAST results are available for this feature:

BLAST of Carg13963-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964078.1	3.3e-124	98.68	protein IAL1-like, partial [Cucurbita moschata]	[more]
XP_023000636.1	1.1e-116	92.98	uncharacterized protein LOC111494882 [Cucurbita maxima]	[more]
XP_023514493.1	1.4e-103	86.09	LOB domain-containing protein 28-like, partial [Cucurbita pepo subsp. pepo]	[more]
KGN45524.1	2.1e-70	64.34	hypothetical protein Csa_7G451300 [Cucumis sativus]	[more]
XP_022991793.1	4.5e-65	61.75	LOB domain-containing protein 29-like [Cucurbita maxima]	[more]

BLAST of Carg13963-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13850.1	1.3e-37	70.87	LOB domain-containing protein 22	[more]
AT1G72980.1	1.2e-24	48.54	LOB domain-containing protein 7	[more]
AT3G47870.1	2.0e-22	51.02	LOB domain-containing protein 27	[more]
AT1G65620.1	1.4e-20	39.45	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.2	4.1e-20	41.44	Lateral organ boundaries (LOB) domain family protein	[more]

BLAST of Carg13963-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LRW1\|LBD22_ARATH	2.3e-36	70.87	LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 S...	[more]
sp\|Q9SSM9\|LBD7_ARATH	2.2e-23	48.54	LOB domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=LBD7 PE=2 SV=...	[more]
sp\|Q9STS6\|LBD27_ARATH	3.5e-21	51.02	LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 S...	[more]
sp\|Q32SG3\|LBD6_MAIZE	6.0e-21	41.67	LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1	[more]
sp\|A1YKY7\|IAL1_MAIZE	3.9e-20	35.97	Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of Carg13963-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9M3\|A0A0A0K9M3_CUCSA	1.4e-70	64.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451300 PE=4 SV=1	[more]
tr\|A0A1S4E3M5\|A0A1S4E3M5_CUCME	1.2e-61	74.57	LOB domain-containing protein 22 OS=Cucumis melo OX=3656 GN=LOC103500724 PE=4 SV...	[more]
tr\|A0A2P5QCU5\|A0A2P5QCU5_GOSBA	4.4e-45	53.68	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33538 PE=4 SV...	[more]
tr\|A0A0D2VJ03\|A0A0D2VJ03_GOSRA	4.4e-45	53.68	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G064500 PE=4 ...	[more]
tr\|A0A1U8KIZ9\|A0A1U8KIZ9_GOSHI	5.8e-45	53.68	LOB domain-containing protein 22-like OS=Gossypium hirsutum OX=3635 GN=LOC107916...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13963	Carg13963	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13963-RA	Carg13963-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13963-RA.exon.1	Carg13963-RA.exon.1	exon
Carg13963-RA.exon.2	Carg13963-RA.exon.2	exon
Carg13963-RA.exon.3	Carg13963-RA.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13963-RA.CDS.1	Carg13963-RA.CDS.1	CDS
Carg13963-RA.CDS.2	Carg13963-RA.CDS.2	CDS
Carg13963-RA.CDS.3	Carg13963-RA.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 39..135 e-value: 4.3E-36 score: 123.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 38..139 score: 25.312
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 27..203
None	No IPR available	PANTHER	PTHR31301:SF21	LOB DOMAIN-CONTAINING PROTEIN 22	coord: 27..203