Carg27185-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27185-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase
Location	Cucurbita_argyrosperma_scaffold_486 : 16542 .. 19860 (-)
Sequence length	2398

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCCCATAATTCAATTTGAAATCAGGGAGCTCTGAATTGGGTGTTCTTCAAGTTTATCATCATCATCATCATCATCATCCATTCTTCTTCCCCAAAACCCAAATGGGTTCGAGCTGTAGTTGTCTGGGGTCGTCGCGCCCTTCTCGCTCCCGAGATTACCGCACCAACCGCTCCAAATTCTGCTCTCTTTTCTGCGGTGCTTCCTCTTCTCGCGCGATTCATCAGGTCATTAAATCCTCTTCTTCTTCATCATCATCGAATCTTTTGTTCTCTCTTCTTCACCCATTTCTTCCCATTATTCCTGAACTTTACTCTAATTCCTCCTTCGAATCTTGTTTCAAAAATCTGGGGTTCCATATCTTCCTCTCAAAGATTGACCCTGAGTAGCATCTTTTATTACGAGCTGTTTATTGCTTTCCTTTGATTCAAGTGTTTATTGCTTTCCTTTGAGCTCTGAATTGGGTTTCGGAATAGTTTTGATCGGAGTATCCCCCGGAATTAGGTTTGAACTGCTGTAGCTTTTGCAATATGTTTCTGTTTGTTTGCTATTTGTTTTGCTTGCGTTTTTGTTGATTGTTGATGGGTAATGATCACTATCCGATTGCTTGGTGATTTTGAATCTTCAATTTGTATGTTATAATCAGTTTCTTACCATCTAAGTTTGCCTTTCGCTCATGTTTTGAATCTTGGATTTCAATAGATGGAAGATTCTATGGTTCAATTTCTTGTCCACCCGGTGGAACATCAACACTGTAATCACAACATTGATGAACTTCAACTCCCCATAAATGGATCTATAAGAATGGGACAGAGCGCTTATTCTGAGAATGACATTGCAGTCAGTGAGGAGCAATGTGCTGTAGATGATATCAATGTTCATGGGAAGCGTGTGTCTCATAATAAGGAATTAGCTCCTCTTCCTCAGGTTAGTGCTGATTATAGCCATGAAGAATCTCGTAGCTATAGTAATGCTTCCAATGGTACTTCACGTAAAGGACATCAATCTTCCGAACCAGTCTGCACGAAGGTTATGTTTGCGGCGAGCAGTTCGACTACTCAAGAGATTGGAGACTCATGTTCCAATGAGCTGACAGGTTGCATTCAAGAGGACGAGGCAACAGCTTACCGGAACCCAGACTCTGAATCGTCGCCTTGTCGTCCTGATCTTTCATTAACTTTCCAGTCTCTTGGAGATGAATCTCTGCAAGAGGTACCCTCAAGTTTAGACACTCTTGTGTCTGATGATAGGGAGGTGGGCCAAGGAGATGTTGATATGGTCGGTGTTTCTTCCAATGTTTTGTCTACGAGTAGCACTGATGCAAGTAATCTTGAGGCTAGAAGGAATAGCAGAAGACTGTTTTGGGATGCCTTTTCAAGGCGTAGTTTCAGAAGGCATAGTGAGTCTCCGTTTGTTTTCCCATCTAATAACTTTAGTAATACAGGAGATCAAGACAGGTGGCTCCTTGATATAAGTGGCGATTTTATCGATGATGAAGCGAGTGGTGATTCAAGACGTTTTTCCAGCAGAATTCACGTCTTGAATGAACAACAAAGAAACTCAAGATCTCAGGTTACATTCTGAATGTTAACAATTATGATCAGTCTTCCATTGTGTTTATACATCATTGCTTCTCAATTAGGTGCAGTTATGGGAAAGAATTCGAAGTAGTCTCAGTGAAAACAGTCGCCAAACTCTACCTTGCCCATCAGGCATTCATCCTAATGGTGCTTGTTCATGCGACTCGTTCTCAAGGGTCGAACACTCGAGTACCCGTGCAAGCATATCGCGGATAATCATGCTTGCTGAAGCACTATTTGAGGTACTTTTTTGAGTTCCAAGTGCTGTGTAATTCAACAGGTATCTCACATCTTGTTCTTTGTGTATCTAAAGGTCTTGGATGAAATTCATGGTCAGCCTGTTTCTCTTGCTCTATCCATGGTTTCACTGCCTGCACCAGAATCAGTTGTTGACTCTTTTCCTTTGAAGAACCACGAAAAGAAAACTAATGGAGGGGATGAAATTGAGCAGTAGGTTCCCTCTTTTCCTTAACCAAGTACTCTTGTTTAGTTTCTAATGTGGGATTGTTTACAAATGCTTGGTTAGATGCTACATTTGCCTTGCCGATTACGAAGACGGTGACAAAATAAGAGTCCTTCCTTGCCACCACGAGTATCATATGTCGTGCGTCGATAAATGGTTGAAGGAGATTCATGGGTATGTTGTGCCTATACATCATCAATTACTGCTCCCTTTTTATCTATTTTATGTCTAGGTATCATTTTACTCATGGATTCATCTCCCTGTATCACTGTGTTTAACAGAGTATGCCCACTTTGTAGAGGGGATGTTCGTGCAGGCACGAACGATGAATGTTCGATTTCAAACTTGGAAATTCCAACGACAATTTGATGAATTGTATAATCGATGACACTAGCGATAAGGAAACTTTCGTAATCCTGTTCCTTGTTAATACTGGGGATGAATTGAATCCCCATGGTTTTGTAAGGCATTCATATTGTACAGCTGTTTCAGAAGAAATATTTGCACAAGTTTTTAGTTTTACCCTGAGCATAAAAGCTCGAATGAATATCTGGAAAAGCCAGTTTGGTTTGAATCATGCAGACATTTGTACAATATACACCAAAAAAGGAACTGTATCAAGACAACAGATAACCAAGACAGGGAGACGGTAATTTCAGCTCTATGCTTACAAATACTTGAGAATTATAAGCACCAACACTGAAAGCCCTTTGGGCTTGCTAATATTGTTGTTGAAGAGATTTGGCTGGCACTTCTTGTCGTCGTCAAATGTCGTCCATCGCATCGAGTTGCTGCCATTATACGAGTATTTGAGGTTGGGATTTGTGGAGTTGAGCTCTGATTGGACTCGTGAAAGCTATTTCTTCAATCCTCTCGCCTAAAACCTTATGATTACGAACGAAATTAGGACACGAAAAACGAAACAAAAGCACCAATTTACAAGCAATTAGGACACGAAAACGAAACAAAAGCACCAATTTACAAGCCAACGCCATTGAAGCAATTCGTTACCTTGTCAATGAAGAAATCGGATGGAGAACCATTTGAATGCAACTTCCTTTTTATTATTTAGTGCTGGGAGCCTTCCCAATTGGACTCGTTGCAATCTGAATTGAACTTGGAAGAACCCCAAAAAGCTTCACTGTCCCATCTTTCATGGAGGTCCAATGGAGCTGTCTCATCCTCTGTTTCGTCTCTCTTCCATTTCGTCAACCCATTGAAGCCCCATTGCTTCTTTCCAGATTTGTTAATTTTTTCTTCAGAATCAGGGCCATA

mRNA sequence

AAAACCCCATAATTCAATTTGAAATCAGGGAGCTCTGAATTGGGTGTTCTTCAAGTTTATCATCATCATCATCATCATCATCCATTCTTCTTCCCCAAAACCCAAATGGGTTCGAGCTGTAGTTGTCTGGGGTCGTCGCGCCCTTCTCGCTCCCGAGATTACCGCACCAACCGCTCCAAATTCTGCTCTCTTTTCTGCGGTGCTTCCTCTTCTCGCGCGATTCATCAGATGGAAGATTCTATGGTTCAATTTCTTGTCCACCCGGTGGAACATCAACACTGTAATCACAACATTGATGAACTTCAACTCCCCATAAATGGATCTATAAGAATGGGACAGAGCGCTTATTCTGAGAATGACATTGCAGTCAGTGAGGAGCAATGTGCTGTAGATGATATCAATGTTCATGGGAAGCGTGTGTCTCATAATAAGGAATTAGCTCCTCTTCCTCAGGTTAGTGCTGATTATAGCCATGAAGAATCTCGTAGCTATAGTAATGCTTCCAATGGTACTTCACGTAAAGGACATCAATCTTCCGAACCAGTCTGCACGAAGGTTATGTTTGCGGCGAGCAGTTCGACTACTCAAGAGATTGGAGACTCATGTTCCAATGAGCTGACAGGTTGCATTCAAGAGGACGAGGCAACAGCTTACCGGAACCCAGACTCTGAATCGTCGCCTTGTCGTCCTGATCTTTCATTAACTTTCCAGTCTCTTGGAGATGAATCTCTGCAAGAGGTACCCTCAAGTTTAGACACTCTTGTGTCTGATGATAGGGAGGTGGGCCAAGGAGATGTTGATATGGTCGGTGTTTCTTCCAATGTTTTGTCTACGAGTAGCACTGATGCAAGTAATCTTGAGGCTAGAAGGAATAGCAGAAGACTGTTTTGGGATGCCTTTTCAAGGCGTAGTTTCAGAAGGCATAGTGAGTCTCCGTTTGTTTTCCCATCTAATAACTTTAGTAATACAGGAGATCAAGACAGGTGGCTCCTTGATATAAGTGGCGATTTTATCGATGATGAAGCGAGTGGTGATTCAAGACGTTTTTCCAGCAGAATTCACGTCTTGAATGAACAACAAAGAAACTCAAGATCTCAGGTGCAGTTATGGGAAAGAATTCGAAGTAGTCTCAGTGAAAACAGTCGCCAAACTCTACCTTGCCCATCAGGCATTCATCCTAATGGTGCTTGTTCATGCGACTCGTTCTCAAGGGTCGAACACTCGAGTACCCGTGCAAGCATATCGCGGATAATCATGCTTGCTGAAGCACTATTTGAGGTCTTGGATGAAATTCATGGTCAGCCTGTTTCTCTTGCTCTATCCATGGTTTCACTGCCTGCACCAGAATCAGTTGTTGACTCTTTTCCTTTGAAGAACCACGAAAAGAAAACTAATGGAGGGGATGAAATTGAGCAATGCTACATTTGCCTTGCCGATTACGAAGACGGTGACAAAATAAGAGTCCTTCCTTGCCACCACGAGTATCATATGTCGTGCGTCGATAAATGGTTGAAGGAGATTCATGGAGTATGCCCACTTTGTAGAGGGGATGTTCGTGCAGGCACGAACGATGAATGTTCGATTTCAAACTTGGAAATTCCAACGACAATTTGATGAATTGTATAATCGATGACACTAGCGATAAGGAAACTTTCGTAATCCTGTTCCTTGTTAATACTGGGGATGAATTGAATCCCCATGGTTTTGTAAGGCATTCATATTGTACAGCTGTTTCAGAAGAAATATTTGCACAAGTTTTTAGTTTTACCCTGAGCATAAAAGCTCGAATGAATATCTGGAAAAGCCAGTTTGGTTTGAATCATGCAGACATTTGTACAATATACACCAAAAAAGGAACTGTATCAAGACAACAGATAACCAAGACAGGGAGACGGTAATTTCAGCTCTATGCTTACAAATACTTGAGAATTATAAGCACCAACACTGAAAGCCCTTTGGGCTTGCTAATATTGTTGTTGAAGAGATTTGGCTGGCACTTCTTGTCGTCGTCAAATGTCGTCCATCGCATCGAGTTGCTGCCATTATACGAGTATTTGAGGTTGGGATTTGTGGAGTTGAGCTCTGATTGGACTCGTGAAAGCTATTTCTTCAATCCTCTCGCCTAAAACCTTATGATTACGAACGAAAAATCGGATGGAGAACCATTTGAATGCAACTTCCTTTTTATTATTTAGTGCTGGGAGCCTTCCCAATTGGACTCGTTGCAATCTGAATTGAACTTGGAAGAACCCCAAAAAGCTTCACTGTCCCATCTTTCATGGAGGTCCAATGGAGCTGTCTCATCCTCTGTTTCGTCTCTCTTCCATTTCGTCAACCCATTGAAGCCCCATTGCTTCTTTCCAGATTTGTTAATTTTTTCTTCAGAATCAGGGCCATA

Coding sequence (CDS)

ATGGGTTCGAGCTGTAGTTGTCTGGGGTCGTCGCGCCCTTCTCGCTCCCGAGATTACCGCACCAACCGCTCCAAATTCTGCTCTCTTTTCTGCGGTGCTTCCTCTTCTCGCGCGATTCATCAGATGGAAGATTCTATGGTTCAATTTCTTGTCCACCCGGTGGAACATCAACACTGTAATCACAACATTGATGAACTTCAACTCCCCATAAATGGATCTATAAGAATGGGACAGAGCGCTTATTCTGAGAATGACATTGCAGTCAGTGAGGAGCAATGTGCTGTAGATGATATCAATGTTCATGGGAAGCGTGTGTCTCATAATAAGGAATTAGCTCCTCTTCCTCAGGTTAGTGCTGATTATAGCCATGAAGAATCTCGTAGCTATAGTAATGCTTCCAATGGTACTTCACGTAAAGGACATCAATCTTCCGAACCAGTCTGCACGAAGGTTATGTTTGCGGCGAGCAGTTCGACTACTCAAGAGATTGGAGACTCATGTTCCAATGAGCTGACAGGTTGCATTCAAGAGGACGAGGCAACAGCTTACCGGAACCCAGACTCTGAATCGTCGCCTTGTCGTCCTGATCTTTCATTAACTTTCCAGTCTCTTGGAGATGAATCTCTGCAAGAGGTACCCTCAAGTTTAGACACTCTTGTGTCTGATGATAGGGAGGTGGGCCAAGGAGATGTTGATATGGTCGGTGTTTCTTCCAATGTTTTGTCTACGAGTAGCACTGATGCAAGTAATCTTGAGGCTAGAAGGAATAGCAGAAGACTGTTTTGGGATGCCTTTTCAAGGCGTAGTTTCAGAAGGCATAGTGAGTCTCCGTTTGTTTTCCCATCTAATAACTTTAGTAATACAGGAGATCAAGACAGGTGGCTCCTTGATATAAGTGGCGATTTTATCGATGATGAAGCGAGTGGTGATTCAAGACGTTTTTCCAGCAGAATTCACGTCTTGAATGAACAACAAAGAAACTCAAGATCTCAGGTGCAGTTATGGGAAAGAATTCGAAGTAGTCTCAGTGAAAACAGTCGCCAAACTCTACCTTGCCCATCAGGCATTCATCCTAATGGTGCTTGTTCATGCGACTCGTTCTCAAGGGTCGAACACTCGAGTACCCGTGCAAGCATATCGCGGATAATCATGCTTGCTGAAGCACTATTTGAGGTCTTGGATGAAATTCATGGTCAGCCTGTTTCTCTTGCTCTATCCATGGTTTCACTGCCTGCACCAGAATCAGTTGTTGACTCTTTTCCTTTGAAGAACCACGAAAAGAAAACTAATGGAGGGGATGAAATTGAGCAATGCTACATTTGCCTTGCCGATTACGAAGACGGTGACAAAATAAGAGTCCTTCCTTGCCACCACGAGTATCATATGTCGTGCGTCGATAAATGGTTGAAGGAGATTCATGGAGTATGCCCACTTTGTAGAGGGGATGTTCGTGCAGGCACGAACGATGAATGTTCGATTTCAAACTTGGAAATTCCAACGACAATTTGA

Protein sequence

MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCNHNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSADYSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEATAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNVLSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISGDFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNGACSCDSFSRVEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI

Homology

[Close]

BLAST of Carg27185-RA vs. NCBI nr
Match: XP_022932117.1 (E3 ubiquitin-protein ligase RNF12-B-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 980.7 bits (2534), Expect = 1.8e-282
Identity = 494/502 (98.41%), Postives = 497/502 (99.00%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLP NGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD
Sbjct: 61  HNIDELQLPTNGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVC KVMFAASSSTTQEIGDSCS+ELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCMKVMFAASSSTTQEIGDSCSDELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAY+NPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYQNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSN+FSNTGDQDRWLLDISG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNSFSNTGDQDRWLLDISG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNG 360
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQ LPCPSGIHPNG
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNLPCPSGIHPNG 360

Query: 361 ACSCDSFSRVEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF 420
           ACSCDSFSRVEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF
Sbjct: 361 ACSCDSFSRVEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF 420

Query: 421 PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR 480
           PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR
Sbjct: 421 PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR 480

Query: 481 GDVRAGTNDECSISNLEIPTTI 503
           GDVRAGTNDECSISNLEIPTTI
Sbjct: 481 GDVRAGTNDECSISNLEIPTTI 502

[Close]

BLAST of Carg27185-RA vs. NCBI nr
Match: XP_022932122.1 (E3 ubiquitin-protein ligase RNF12-B-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 972.2 bits (2512), Expect = 6.6e-280
Identity = 492/502 (98.01%), Postives = 495/502 (98.61%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLP NGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD
Sbjct: 61  HNIDELQLPTNGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVC KVMFAASSSTTQEIGDSCS+ELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCMKVMFAASSSTTQEIGDSCSDELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAY+NPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYQNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSN+FSNTGDQDRWLLDISG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNSFSNTGDQDRWLLDISG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNG 360
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRS  QLWERIRSSLSENSRQ LPCPSGIHPNG
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRS--QLWERIRSSLSENSRQNLPCPSGIHPNG 360

Query: 361 ACSCDSFSRVEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF 420
           ACSCDSFSRVEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF
Sbjct: 361 ACSCDSFSRVEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF 420

Query: 421 PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR 480
           PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR
Sbjct: 421 PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR 480

Query: 481 GDVRAGTNDECSISNLEIPTTI 503
           GDVRAGTNDECSISNLEIPTTI
Sbjct: 481 GDVRAGTNDECSISNLEIPTTI 500

[Close]

BLAST of Carg27185-RA vs. NCBI nr
Match: XP_023530449.1 (E3 ubiquitin-protein ligase RNF12-A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 971.1 bits (2509), Expect = 1.5e-279
Identity = 486/502 (96.81%), Postives = 492/502 (98.01%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQME+SMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEESMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLP NGSIRMGQS YS+NDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD
Sbjct: 61  HNIDELQLPTNGSIRMGQSVYSDNDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVCTK MFAASSSTTQE+GDSCSNELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCTKAMFAASSSTTQEVGDSCSNELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAYRNPDSESSPC PDLS TFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYRNPDSESSPCHPDLSFTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLD+SG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDLSG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNG 360
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQ LPCPSGIHPNG
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNLPCPSGIHPNG 360

Query: 361 ACSCDSFSRVEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF 420
            CSCDSFSRVEHSST ASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF
Sbjct: 361 PCSCDSFSRVEHSSTHASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF 420

Query: 421 PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR 480
           PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR
Sbjct: 421 PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR 480

Query: 481 GDVRAGTNDECSISNLEIPTTI 503
           GDVRAG+NDECSISNLEIPT+I
Sbjct: 481 GDVRAGSNDECSISNLEIPTSI 502

[Close]

BLAST of Carg27185-RA vs. NCBI nr
Match: XP_023001605.1 (E3 ubiquitin-protein ligase RNF12-A-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 966.1 bits (2496), Expect = 4.7e-278
Identity = 487/502 (97.01%), Postives = 491/502 (97.81%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRV  NKELAPLPQVSAD
Sbjct: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVYDNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVCTKVMFAASSSTTQE+GDSCSNELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCTKVMFAASSSTTQEVGDSCSNELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAYRNPDSES PCRPDLSLT +SLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYRNPDSESLPCRPDLSLTIESLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNG 360
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQ LPCPSGIHPNG
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQNLPCPSGIHPNG 360

Query: 361 ACSCDSFSRVEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF 420
           ACSCDSFS VEHSSTR SISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF
Sbjct: 361 ACSCDSFSSVEHSSTRESISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF 420

Query: 421 PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR 480
           PLKNHEKKTNGGDEIEQCYICLADYE+GDKIRVLPC HEYHMSCVDKWLKEIHGVCPLCR
Sbjct: 421 PLKNHEKKTNGGDEIEQCYICLADYEEGDKIRVLPCRHEYHMSCVDKWLKEIHGVCPLCR 480

Query: 481 GDVRAGTNDECSISNLEIPTTI 503
           GDVRAG+NDECSISNLEIP TI
Sbjct: 481 GDVRAGSNDECSISNLEIPATI 502

[Close]

BLAST of Carg27185-RA vs. NCBI nr
Match: XP_023530450.1 (E3 ubiquitin-protein ligase RNF12-B-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 962.6 bits (2487), Expect = 5.2e-277
Identity = 484/502 (96.41%), Postives = 490/502 (97.61%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQME+SMVQFLVHPVEHQHCN
Sbjct: 1   MGSSCSRLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEESMVQFLVHPVEHQHCN 60

Query: 61  HNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120
           HNIDELQLP NGSIRMGQS YS+NDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD
Sbjct: 61  HNIDELQLPTNGSIRMGQSVYSDNDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSAD 120

Query: 121 YSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEA 180
           YSHEESRSYSNASNGTS KGHQSSEPVCTK MFAASSSTTQE+GDSCSNELTGCIQEDEA
Sbjct: 121 YSHEESRSYSNASNGTSCKGHQSSEPVCTKAMFAASSSTTQEVGDSCSNELTGCIQEDEA 180

Query: 181 TAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240
           TAYRNPDSESSPC PDLS TFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV
Sbjct: 181 TAYRNPDSESSPCHPDLSFTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNV 240

Query: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISG 300
           LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLD+SG
Sbjct: 241 LSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDLSG 300

Query: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNG 360
           DFIDDEASGDSRRFSSRIHVLNEQQRNSRS  QLWERIRSSLSENSRQ LPCPSGIHPNG
Sbjct: 301 DFIDDEASGDSRRFSSRIHVLNEQQRNSRS--QLWERIRSSLSENSRQNLPCPSGIHPNG 360

Query: 361 ACSCDSFSRVEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF 420
            CSCDSFSRVEHSST ASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF
Sbjct: 361 PCSCDSFSRVEHSSTHASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSF 420

Query: 421 PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR 480
           PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR
Sbjct: 421 PLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCR 480

Query: 481 GDVRAGTNDECSISNLEIPTTI 503
           GDVRAG+NDECSISNLEIPT+I
Sbjct: 481 GDVRAGSNDECSISNLEIPTSI 500

[Close]

BLAST of Carg27185-RA vs. TAIR10
Match: AT5G45290.2 (RING/U-box superfamily protein)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-35
Identity = 84/177 (47.46%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 323 EQQRNSRSQVQLWERIRSSLSENS-RQTLPCP-SGIHPNGACSC-------DSFSRVEHS 382
           E++R  RSQV+  +R+ S     +      C  SG    G C+C        + +  + +
Sbjct: 362 ERRRRIRSQVRALQRLGSRFENVAVHHDRSCVLSGQDQAGRCTCRAVTNRGSTTATTDET 421

Query: 383 STRASISRIIMLAEALFEVLDEIHGQPVSLA------LSMVSLPAPESVVDSFPLKNHEK 442
           + RASISRI++LAEALFEVLDEIH Q V L+       S+ S+PAP  VVD  P+K + K
Sbjct: 422 NARASISRIVLLAEALFEVLDEIHQQSVVLSSQQPSVSSIGSVPAPNDVVDLLPIKLYTK 481

Query: 443 KTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHG-VCPLCRGDV 484
             +  ++  QCYICL +YE+ D IR LPCHHE+H +CVDKWLKEIH  VCPLCRGD+
Sbjct: 482 SQS--EDPSQCYICLVEYEEADSIRTLPCHHEFHKTCVDKWLKEIHSRVCPLCRGDI 536

[Close]

BLAST of Carg27185-RA vs. TAIR10
Match: AT4G09560.1 (Protease-associated (PA) RING/U-box zinc finger family protein)

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-14
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 438 CYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDE 491
           C ICL +YE GDK+R+LPCHH++H++CVD WL +    CP+C+ D R+ + D+
Sbjct: 234 CCICLENYEKGDKLRILPCHHKFHVACVDLWLGQRKSFCPVCKRDARSISTDK 286

[Close]

BLAST of Carg27185-RA vs. TAIR10
Match: AT1G71980.1 (Protease-associated (PA) RING/U-box zinc finger family protein)

HSP 1 Score: 73.9 bits (180), Expect = 3.1e-13
Identity = 38/95 (40.00%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 395 EIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVL 454
           E HG    L  +M SL     +  SF    HE  T        C ICL DY  GDK+R+L
Sbjct: 202 EFHGMSRRLVKAMPSL-----IFSSF----HEDNTTA----FTCAICLEDYTVGDKLRLL 261

Query: 455 PCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTND 490
           PC H++H +CVD WL      CP+C+ D R  T +
Sbjct: 262 PCCHKFHAACVDSWLTSWRTFCPVCKRDARTSTGE 283

[Close]

BLAST of Carg27185-RA vs. TAIR10
Match: AT3G19910.1 (RING/U-box superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 8.9e-13
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 417 VDSFPLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVC 476
           + S P K +++  N     E C IC  DYED + + +LPC H YH  C++ WLK I+ VC
Sbjct: 267 IASLPSKRYKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLK-INKVC 326

Query: 477 PLCRGDVRAGTNDE 491
           P+C  +V   T+ +
Sbjct: 327 PVCSAEVSTSTSGQ 339

[Close]

BLAST of Carg27185-RA vs. TAIR10
Match: AT4G11680.1 (Zinc finger, C3HC4 type (RING finger) family protein)

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-12
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 434 EIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDE 491
           E  +C ICL +YEDG ++R LPC+H +H +C+DKWL  I+  CPLC+ ++    N+E
Sbjct: 334 EDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWL-HINSRCPLCKFNILKNANNE 389

[Close]

BLAST of Carg27185-RA vs. Swiss-Prot
Match: sp|Q91XF4|RN167_MOUSE (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.1e-15
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 432 GDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDE 491
           GDE + C ICL +YEDGDK+RVLPC H YH  CVD WL +    CP+C+  V  G  DE
Sbjct: 224 GDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDE 282

[Close]

BLAST of Carg27185-RA vs. Swiss-Prot
Match: sp|Q5XIL0|RN167_RAT (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-15
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 432 GDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDE 491
           GDE + C ICL +YEDGDK+R+LPC H YH  CVD WL +    CP+C+  V  G  DE
Sbjct: 224 GDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDE 282

[Close]

BLAST of Carg27185-RA vs. Swiss-Prot
Match: sp|Q9H6Y7|RN167_HUMAN (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 9.1e-15
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 432 GDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDE 491
           GD+ + C ICL +YEDGDK+RVLPC H YH  CVD WL +    CP+C+  V  G  DE
Sbjct: 224 GDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDE 282

[Close]

BLAST of Carg27185-RA vs. Swiss-Prot
Match: sp|Q90972|RNF13_CHICK (E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus OX=9031 GN=RNF13 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-13
Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 428 KTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGT 487
           K   GDE + C ICL +YEDGDK+R+LPC H YH  CVD WL +    CP+C+  V    
Sbjct: 230 KFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289

Query: 488 NDECS 493
            D  S
Sbjct: 290 GDSDS 294

[Close]

BLAST of Carg27185-RA vs. Swiss-Prot
Match: sp|O54965|RNF13_MOUSE (E3 ubiquitin-protein ligase RNF13 OS=Mus musculus OX=10090 GN=Rnf13 PE=1 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-13
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 428 KTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGT 487
           K   GDE + C ICL +YEDGDK+R+LPC H YH  CVD WL +    CP+C+  V    
Sbjct: 230 KFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289

Query: 488 ND 490
            D
Sbjct: 290 GD 291

[Close]

BLAST of Carg27185-RA vs. TrEMBL
Match: tr|A0A1S4DV08|A0A1S4DV08_CUCME (E3 ubiquitin-protein ligase RNF12-A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487388 PE=4 SV=1)

HSP 1 Score: 775.0 bits (2000), Expect = 1.0e-220
Identity = 414/541 (76.52%), Postives = 440/541 (81.33%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LG SRPSRSRDYRTNRS  CS FCGASSSRAIHQMEDS VQFLVHP +HQ CN
Sbjct: 1   MGSSCSRLG-SRPSRSRDYRTNRSNLCSFFCGASSSRAIHQMEDSSVQFLVHPTDHQQCN 60

Query: 61  HNIDELQLPINGSIRMG---QSAYS----ENDIAVSEEQCAVD----DINVHGKRVSHNK 120
           HNIDE+QLP NGSIRMG    SAYS    EN IA SEE    D    DINVHGK +  NK
Sbjct: 61  HNIDEVQLPTNGSIRMGLPNASAYSETSYENGIADSEESAVDDPRNIDINVHGKCLFQNK 120

Query: 121 ELAPLPQVSADYSHEESRSYSNASNGTSRKGHQSSE------------------------ 180
           ELAP  QVSADYS +ES  YSNASNGTS KGHQSSE                        
Sbjct: 121 ELAPPQQVSADYSPDESHRYSNASNGTSFKGHQSSEPVSVNILANEDAVNGIDGSVDKGV 180

Query: 181 -PVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEATAYRNPDSESSPCRPDLSLTFQSL 240
            PVC+KV FAASSSTTQE+G+ CS+ LTG IQEDE +  + P SESSP    L LTFQSL
Sbjct: 181 SPVCSKVTFAASSSTTQEVGNLCSSGLTGSIQEDEVSVNQGPFSESSPSGSGLPLTFQSL 240

Query: 241 GDESLQEVPSSLDTLVSDDREVGQGD-----VDMVGVSSNVLSTSSTDASNLEARRNSRR 300
            DES QE PSSLDTL SD+RE+GQGD     VDMVG+SSNVLSTSSTD S+LE RRNSRR
Sbjct: 241 EDESSQEEPSSLDTLDSDNRELGQGDXXMPHVDMVGISSNVLSTSSTDTSSLEVRRNSRR 300

Query: 301 LFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISGDFIDDEASGDSRRFSSRIH 360
           LFWDAFSRRSFRR  ESPFVFPSNNFSNTGD DRWLLDISGDFIDDE SGDSR FSSRIH
Sbjct: 301 LFWDAFSRRSFRRQRESPFVFPSNNFSNTGDTDRWLLDISGDFIDDEVSGDSRHFSSRIH 360

Query: 361 VLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNGACSCDSFSRVEHSSTRASI 420
           +LNEQQRNSRSQVQ+WER+RSSL+E S+Q + CPSGIHPNG CSCDSFSR+EHSSTRASI
Sbjct: 361 ILNEQQRNSRSQVQIWERLRSSLTETSQQNVSCPSGIHPNGPCSCDSFSRIEHSSTRASI 420

Query: 421 SRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCY 480
           SRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEK TNGGDEIEQCY
Sbjct: 421 SRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKTTNGGDEIEQCY 480

Query: 481 ICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIP 501
           ICLA+YE+GDKIRVLPC HEYHM CVDKWLKEIHGVCPLCRGDVRAG+NDECS+ N E+ 
Sbjct: 481 ICLAEYEEGDKIRVLPCRHEYHMLCVDKWLKEIHGVCPLCRGDVRAGSNDECSVPNNEVS 540

[Close]

BLAST of Carg27185-RA vs. TrEMBL
Match: tr|A0A1S3B977|A0A1S3B977_CUCME (uncharacterized protein LOC103487388 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487388 PE=4 SV=1)

HSP 1 Score: 766.9 bits (1979), Expect = 2.8e-218
Identity = 412/541 (76.16%), Postives = 438/541 (80.96%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LG SRPSRSRDYRTNRS  CS FCGASSSRAIHQMEDS VQFLVHP +HQ CN
Sbjct: 1   MGSSCSRLG-SRPSRSRDYRTNRSNLCSFFCGASSSRAIHQMEDSSVQFLVHPTDHQQCN 60

Query: 61  HNIDELQLPINGSIRMG---QSAYS----ENDIAVSEEQCAVD----DINVHGKRVSHNK 120
           HNIDE+QLP NGSIRMG    SAYS    EN IA SEE    D    DINVHGK +  NK
Sbjct: 61  HNIDEVQLPTNGSIRMGLPNASAYSETSYENGIADSEESAVDDPRNIDINVHGKCLFQNK 120

Query: 121 ELAPLPQVSADYSHEESRSYSNASNGTSRKGHQSSE------------------------ 180
           ELAP  QVSADYS +ES  YSNASNGTS KGHQSSE                        
Sbjct: 121 ELAPPQQVSADYSPDESHRYSNASNGTSFKGHQSSEPVSVNILANEDAVNGIDGSVDKGV 180

Query: 181 -PVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEATAYRNPDSESSPCRPDLSLTFQSL 240
            PVC+KV FAASSSTTQE+G+ CS+ LTG IQEDE +  + P SESSP    L LTFQSL
Sbjct: 181 SPVCSKVTFAASSSTTQEVGNLCSSGLTGSIQEDEVSVNQGPFSESSPSGSGLPLTFQSL 240

Query: 241 GDESLQEVPSSLDTLVSDDREVGQGD-----VDMVGVSSNVLSTSSTDASNLEARRNSRR 300
            DES QE PSSLDTL SD+RE+GQGD     VDMVG+SSNVLSTSSTD S+LE RRNSRR
Sbjct: 241 EDESSQEEPSSLDTLDSDNRELGQGDXXMPHVDMVGISSNVLSTSSTDTSSLEVRRNSRR 300

Query: 301 LFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISGDFIDDEASGDSRRFSSRIH 360
           LFWDAFSRRSFRR  ESPFVFPSNNFSNTGD DRWLLDISGDFIDDE SGDSR FSSRIH
Sbjct: 301 LFWDAFSRRSFRRQRESPFVFPSNNFSNTGDTDRWLLDISGDFIDDEVSGDSRHFSSRIH 360

Query: 361 VLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNGACSCDSFSRVEHSSTRASI 420
           +LNEQQRNSRSQ+  WER+RSSL+E S+Q + CPSGIHPNG CSCDSFSR+EHSSTRASI
Sbjct: 361 ILNEQQRNSRSQI--WERLRSSLTETSQQNVSCPSGIHPNGPCSCDSFSRIEHSSTRASI 420

Query: 421 SRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCY 480
           SRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEK TNGGDEIEQCY
Sbjct: 421 SRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKTTNGGDEIEQCY 480

Query: 481 ICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIP 501
           ICLA+YE+GDKIRVLPC HEYHM CVDKWLKEIHGVCPLCRGDVRAG+NDECS+ N E+ 
Sbjct: 481 ICLAEYEEGDKIRVLPCRHEYHMLCVDKWLKEIHGVCPLCRGDVRAGSNDECSVPNNEVS 538

[Close]

BLAST of Carg27185-RA vs. TrEMBL
Match: tr|A0A0A0LTU1|A0A0A0LTU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265080 PE=4 SV=1)

HSP 1 Score: 763.5 bits (1970), Expect = 3.1e-217
Identity = 412/543 (75.87%), Postives = 437/543 (80.48%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCN 60
           MGSSCS LG SRPSRSRDYRTNRS  CS FCGASSSRAIHQMEDS VQFLVHP EHQ CN
Sbjct: 1   MGSSCSRLG-SRPSRSRDYRTNRSNLCSFFCGASSSRAIHQMEDSSVQFLVHPTEHQQCN 60

Query: 61  HNIDELQLPINGSIRM---GQSAYS----ENDIAVSEEQCAVD-----DINVHGKRVSHN 120
           HNIDE+QLP NGSIRM     S YS    EN IA  EE+ AVD     DINVHGK +  N
Sbjct: 61  HNIDEVQLPTNGSIRMELPNASTYSETSYENGIADGEERTAVDDPRNIDINVHGKCLFQN 120

Query: 121 KELAPLPQVSADYSHEESRSYSNASNGTSRKGHQSSE----------------------- 180
           KELA   QVSADYS +ES  YSNASNGTS KGHQSSE                       
Sbjct: 121 KELASPQQVSADYSPDESHRYSNASNGTSFKGHQSSEPVSVNILANEDAVNGIDGSVDKD 180

Query: 181 --PVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEATAYRNPDSESSPCRPDLSLTFQS 240
             PVCTKVMFAASSSTTQE+G+SCS+ LTG IQEDE +  + P  ESSP    L LTFQS
Sbjct: 181 ISPVCTKVMFAASSSTTQEVGNSCSSGLTGSIQEDEVSVIQGPFLESSPSGSGLPLTFQS 240

Query: 241 LGDESLQEVPSSLDTLVSDDREVGQGD-----VDMVGVSSNVLSTSSTDASNLEARRNSR 300
           LGDES QE PS LDTL SDDRE+  GD     VDMVG+SSNVLSTSSTD S+LE RRNSR
Sbjct: 241 LGDESSQEEPSILDTLESDDRELDHGDVGLPHVDMVGISSNVLSTSSTDTSSLEVRRNSR 300

Query: 301 RLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISGDFIDDEASGDSRRFSSRI 360
           RLFWDAFSRRSFRR  ESPFVFPSNNFSNTGD DRWLLDISGDFIDDE SGDSR FSSRI
Sbjct: 301 RLFWDAFSRRSFRRQRESPFVFPSNNFSNTGDTDRWLLDISGDFIDDEVSGDSRHFSSRI 360

Query: 361 HVLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNGACSCDSFSRVEHSSTRAS 420
           H+LNEQQRNSRSQ+  WER+RSSL+E S+Q + CPSGIHPNG CSCDSFSR+EHSSTRAS
Sbjct: 361 HILNEQQRNSRSQI--WERLRSSLTETSQQNVSCPSGIHPNGPCSCDSFSRIEHSSTRAS 420

Query: 421 ISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQC 480
           ISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPE+VVDSFPLKNHEK TNGGDEIEQC
Sbjct: 421 ISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPEAVVDSFPLKNHEKTTNGGDEIEQC 480

Query: 481 YICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECS-ISNLE 501
           YICLA+YE+GDKIRVLPC HEYHM CVDKWLKEIHGVCPLCRGDVRAG+NDECS + N E
Sbjct: 481 YICLAEYEEGDKIRVLPCRHEYHMLCVDKWLKEIHGVCPLCRGDVRAGSNDECSVVPNNE 540

[Close]

BLAST of Carg27185-RA vs. TrEMBL
Match: tr|A0A2I4HNQ7|A0A2I4HNQ7_9ROSI (E3 ubiquitin ligase BIG BROTHER-related-like OS=Juglans regia OX=51240 GN=LOC109019821 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 3.8e-127
Identity = 289/543 (53.22%), Postives = 351/543 (64.64%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQ--- 60
           MGSS S LG SRPSR+R  RTNRS+  SL CG S+SRA HQMED  V+  V+  EH    
Sbjct: 1   MGSSSSRLG-SRPSRARVNRTNRSRVFSLICGGSTSRATHQMEDCAVESHVNSAEHSNPV 60

Query: 61  -HCNHNIDELQLPINGSIRMGQSAYSENDIAVSE-EQCAVDD--INV----HGKRVSHNK 120
            +   NI E    + G+ R+  S      ++ S  E  AV+D  INV    HGK +S +K
Sbjct: 61  INVVQNIIEETSLVTGAGRLSYSITETGALSGSSIENPAVEDGSINVETSNHGKCLSESK 120

Query: 121 ELAPLPQVSADYSHEESRSYSNAS-----------------------NGTSRKGHQSSEP 180
           EL P  QVSAD+SH+ES  YS+ +                                    
Sbjct: 121 ELVPPHQVSADHSHDESCRYSSTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 VCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEATAYRNPDSESSPCRPDLSLTFQSLGD 240
                     SS+ QE+GDS  N ++      E TA+ N D +S P   +  +TF SLGD
Sbjct: 181 XXXXXXXXXXSSSPQELGDSSFNGVSVDNHISEVTAFENSDPDSVPHDSNPPMTFGSLGD 240

Query: 241 ESLQE-VPSSLDTLVSDDREVGQGD-----VDMVGVSSNVLSTSSTDASNLEARRNSRRL 300
           ES QE +PS L  LVS +RE G GD     VD+V +SS+V+S+S+ D SN E RRNSRRL
Sbjct: 241 ESFQEAIPSGLGFLVS-NREQGWGDGGVLQVDVVTISSSVVSSSNADESNREVRRNSRRL 300

Query: 301 FWDAFSRRSFRRHSESPFVFPSNNFS-NTGDQDRWLLDISGDFIDDEASGDSRRFSSRIH 360
           FWDAFSRRS RRHS+SP +  S + S + G  DRWLLD+S DF D    GD     SRIH
Sbjct: 301 FWDAFSRRSSRRHSDSPSILLSTDDSHDLGSHDRWLLDLSSDFFDG-VGGDRGHLGSRIH 360

Query: 361 VLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNGACSCDSFSRVEHSSTRASI 420
            LNEQ+R+SRS++  WER+R SL +N RQ   CPSG+HP+G CSC+SF   E S+TRASI
Sbjct: 361 SLNEQRRHSRSEI--WERVRGSLDDNGRQNTACPSGLHPDGTCSCESFLMSEESNTRASI 420

Query: 421 SRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGG--DEIEQ 480
           SRI+MLAEALFEVLDEIH QPVSL+LSMVSLPAPESVV+SFPLK+H+K    G  +++EQ
Sbjct: 421 SRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVNSFPLKSHKKVEASGASEDVEQ 480

Query: 481 CYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLE 501
           CYICLA+YE+GDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVR     E S+S+ E
Sbjct: 481 CYICLAEYEEGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVREVA--EASVSHSE 536

[Close]

BLAST of Carg27185-RA vs. TrEMBL
Match: tr|A0A2P4JK12|A0A2P4JK12_QUESU (Receptor likey region, transmembrane domain-and ring domain-containing protein 4 OS=Quercus suber OX=58331 GN=CFP56_38048 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.3e-126
Identity = 295/545 (54.13%), Postives = 349/545 (64.04%), Query Frame = 0


Query: 1   MGSSCSCLGSSRPSR-SRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEH--Q 60
           MGSS S +  SRPSR +R   TNRS   SL CG SSSRA HQ+ED  V+FLV   EH  Q
Sbjct: 1   MGSSNSRM-ESRPSRPTRVNGTNRSNVFSLICGGSSSRATHQLEDRPVEFLVDSAEHSNQ 60

Query: 61  HCN--HNIDELQLPINGSIRMGQS-----AYSENDIAVSEEQCAVD-----DINVHGKRV 120
             N   NI E      G+ R   S     A SE+ I  SE+          + N  GK  
Sbjct: 61  LINEVQNITEETTLSTGTGRFSCSNTEIGASSESSILTSEDTSVEHGSVYIETNNRGKCF 120

Query: 121 SHNKELAPLPQVSADYSHEESRSYSNASNGTSRKGHQSSEPVCTK--------------- 180
           S +KEL P  QVSA +SH+ES   S  +  TS K  QSS+PV                  
Sbjct: 121 SESKELVPPHQVSAGHSHDESYRDSGTTASTSLKEQQSSDPVSVNXXXXXXXXXXXXXXX 180

Query: 181 --------VMFAASSSTTQEIGDSCSNELTGCIQEDEATAYRNPDSESSPCRPDLSLTFQ 240
                        SSS++QEIGDS S  ++      E TA    DS+S P   +L  TF+
Sbjct: 181 XXXXXXXXXXXXXSSSSSQEIGDSSSRRVSVENHIGEVTA---SDSDSVPHESNLPATFR 240

Query: 241 SLGDESLQE-VPSSLDTLVSD-DREVGQG---DVDMVGVSSNVLSTSSTDASNLEARRNS 300
            LGD SL E +PS L  LVS+ DR    G    VD+V +SSN++S+S+ D  N E RRNS
Sbjct: 241 LLGDGSLPEAIPSGLGFLVSNRDRSWADGSVLQVDVVTISSNIISSSNADEGNREVRRNS 300

Query: 301 RRLFWDAFSRRSFRRHSESPFVFPS-NNFSNTGDQDRWLLDISGDFIDDEASGDSRRFSS 360
           RRLFWDAFSRRS RR+S+SP +  S ++  + G  DRWLLD+SGDF DD    D     S
Sbjct: 301 RRLFWDAFSRRSSRRNSDSPTILLSTDDTDDLGSHDRWLLDLSGDFFDDGVGSDRGYLGS 360

Query: 361 RIHVLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNGACSCDSFSRVEHSSTR 420
           RIH LNEQ+R+SRS++  WER+R SL +N R+   CPSG+H +G CSC+S S  E SSTR
Sbjct: 361 RIHRLNEQRRHSRSEI--WERLRGSLDDNGRRNTTCPSGLHQDGRCSCESLSTNEESSTR 420

Query: 421 ASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEK-KTNGGDEI 480
           ASISRI+MLAEALFEVLDEIH QPVSL+LSMVSLPAPESVVDSFPLK+H+K +T  G E 
Sbjct: 421 ASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPLKSHKKVETAEGSEA 480

Query: 481 EQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISN 501
           EQCYICLA+YE+GDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVR G   E S+SN
Sbjct: 481 EQCYICLAEYEEGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVREGLT-ESSVSN 538

The following BLAST results are available for this feature:

BLAST of Carg27185-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932117.1	1.8e-282	98.41	E3 ubiquitin-protein ligase RNF12-B-like isoform X1 [Cucurbita moschata]	[more]
XP_022932122.1	6.6e-280	98.01	E3 ubiquitin-protein ligase RNF12-B-like isoform X2 [Cucurbita moschata]	[more]
XP_023530449.1	1.5e-279	96.81	E3 ubiquitin-protein ligase RNF12-A-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023001605.1	4.7e-278	97.01	E3 ubiquitin-protein ligase RNF12-A-like isoform X1 [Cucurbita maxima]	[more]
XP_023530450.1	5.2e-277	96.41	E3 ubiquitin-protein ligase RNF12-B-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg27185-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45290.2	1.7e-35	47.46	RING/U-box superfamily protein	[more]
AT4G09560.1	2.8e-14	50.94	Protease-associated (PA) RING/U-box zinc finger family protein	[more]
AT1G71980.1	3.1e-13	40.00	Protease-associated (PA) RING/U-box zinc finger family protein	[more]
AT3G19910.1	8.9e-13	39.19	RING/U-box superfamily protein	[more]
AT4G11680.1	2.6e-12	47.37	Zinc finger, C3HC4 type (RING finger) family protein	[more]

BLAST of Carg27185-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q91XF4\|RN167_MOUSE	4.1e-15	55.93	E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1	[more]
sp\|Q5XIL0\|RN167_RAT	5.3e-15	54.24	E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 ...	[more]
sp\|Q9H6Y7\|RN167_HUMAN	9.1e-15	54.24	E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1	[more]
sp\|Q90972\|RNF13_CHICK	1.7e-13	49.23	E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus OX=9031 GN=RNF13 PE=1 SV=1	[more]
sp\|O54965\|RNF13_MOUSE	1.7e-13	50.00	E3 ubiquitin-protein ligase RNF13 OS=Mus musculus OX=10090 GN=Rnf13 PE=1 SV=2	[more]

BLAST of Carg27185-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DV08\|A0A1S4DV08_CUCME	1.0e-220	76.52	E3 ubiquitin-protein ligase RNF12-A-like isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S3B977\|A0A1S3B977_CUCME	2.8e-218	76.16	uncharacterized protein LOC103487388 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LTU1\|A0A0A0LTU1_CUCSA	3.1e-217	75.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265080 PE=4 SV=1	[more]
tr\|A0A2I4HNQ7\|A0A2I4HNQ7_9ROSI	3.8e-127	53.22	E3 ubiquitin ligase BIG BROTHER-related-like OS=Juglans regia OX=51240 GN=LOC109...	[more]
tr\|A0A2P4JK12\|A0A2P4JK12_QUESU	3.3e-126	54.13	Receptor likey region, transmembrane domain-and ring domain-containing protein 4...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg27185	Carg27185	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg27185-RA	Carg27185-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27185-RA.three_prime_UTR.2	Carg27185-RA.three_prime_UTR.2	three_prime_UTR
Carg27185-RA.three_prime_UTR.1	Carg27185-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27185-RA.CDS.6	Carg27185-RA.CDS.6	CDS
Carg27185-RA.CDS.5	Carg27185-RA.CDS.5	CDS
Carg27185-RA.CDS.4	Carg27185-RA.CDS.4	CDS
Carg27185-RA.CDS.3	Carg27185-RA.CDS.3	CDS
Carg27185-RA.CDS.2	Carg27185-RA.CDS.2	CDS
Carg27185-RA.CDS.1	Carg27185-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27185-RA.five_prime_UTR.1	Carg27185-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27185-RA.exon.7	Carg27185-RA.exon.7	exon
Carg27185-RA.exon.6	Carg27185-RA.exon.6	exon
Carg27185-RA.exon.5	Carg27185-RA.exon.5	exon
Carg27185-RA.exon.4	Carg27185-RA.exon.4	exon
Carg27185-RA.exon.3	Carg27185-RA.exon.3	exon
Carg27185-RA.exon.2	Carg27185-RA.exon.2	exon
Carg27185-RA.exon.1	Carg27185-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 438..479 e-value: 2.3E-6 score: 37.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 437..480 e-value: 1.7E-11 score: 44.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 438..480 score: 12.46
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 404..486 e-value: 1.4E-19 score: 71.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..145
None	No IPR available	PANTHER	PTHR14155:SF426	RING/U-BOX DOMAIN-CONTAINING PROTEIN-RELATED	coord: 150..484
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 150..484
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 437..480 e-value: 1.16944E-17 score: 76.1113
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 426..485