Carg27185 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAACCCCATAATTCAATTTGAAATCAGGGAGCTCTGAATTGGGTGTTCTTCAAGTTTATCATCATCATCATCATCATCATCCATTCTTCTTCCCCAAAACCCAAATGGGTTCGAGCTGTAGTTGTCTGGGGTCGTCGCGCCCTTCTCGCTCCCGAGATTACCGCACCAACCGCTCCAAATTCTGCTCTCTTTTCTGCGGTGCTTCCTCTTCTCGCGCGATTCATCAGGTCATTAAATCCTCTTCTTCTTCATCATCATCGAATCTTTTGTTCTCTCTTCTTCACCCATTTCTTCCCATTATTCCTGAACTTTACTCTAATTCCTCCTTCGAATCTTGTTTCAAAAATCTGGGGTTCCATATCTTCCTCTCAAAGATTGACCCTGAGTAGCATCTTTTATTACGAGCTGTTTATTGCTTTCCTTTGATTCAAGTGTTTATTGCTTTCCTTTGAGCTCTGAATTGGGTTTCGGAATAGTTTTGATCGGAGTATCCCCCGGAATTAGGTTTGAACTGCTGTAGCTTTTGCAATATGTTTCTGTTTGTTTGCTATTTGTTTTGCTTGCGTTTTTGTTGATTGTTGATGGGTAATGATCACTATCCGATTGCTTGGTGATTTTGAATCTTCAATTTGTATGTTATAATCAGTTTCTTACCATCTAAGTTTGCCTTTCGCTCATGTTTTGAATCTTGGATTTCAATAGATGGAAGATTCTATGGTTCAATTTCTTGTCCACCCGGTGGAACATCAACACTGTAATCACAACATTGATGAACTTCAACTCCCCATAAATGGATCTATAAGAATGGGACAGAGCGCTTATTCTGAGAATGACATTGCAGTCAGTGAGGAGCAATGTGCTGTAGATGATATCAATGTTCATGGGAAGCGTGTGTCTCATAATAAGGAATTAGCTCCTCTTCCTCAGGTTAGTGCTGATTATAGCCATGAAGAATCTCGTAGCTATAGTAATGCTTCCAATGGTACTTCACGTAAAGGACATCAATCTTCCGAACCAGTCTGCACGAAGGTTATGTTTGCGGCGAGCAGTTCGACTACTCAAGAGATTGGAGACTCATGTTCCAATGAGCTGACAGGTTGCATTCAAGAGGACGAGGCAACAGCTTACCGGAACCCAGACTCTGAATCGTCGCCTTGTCGTCCTGATCTTTCATTAACTTTCCAGTCTCTTGGAGATGAATCTCTGCAAGAGGTACCCTCAAGTTTAGACACTCTTGTGTCTGATGATAGGGAGGTGGGCCAAGGAGATGTTGATATGGTCGGTGTTTCTTCCAATGTTTTGTCTACGAGTAGCACTGATGCAAGTAATCTTGAGGCTAGAAGGAATAGCAGAAGACTGTTTTGGGATGCCTTTTCAAGGCGTAGTTTCAGAAGGCATAGTGAGTCTCCGTTTGTTTTCCCATCTAATAACTTTAGTAATACAGGAGATCAAGACAGGTGGCTCCTTGATATAAGTGGCGATTTTATCGATGATGAAGCGAGTGGTGATTCAAGACGTTTTTCCAGCAGAATTCACGTCTTGAATGAACAACAAAGAAACTCAAGATCTCAGGTTACATTCTGAATGTTAACAATTATGATCAGTCTTCCATTGTGTTTATACATCATTGCTTCTCAATTAGGTGCAGTTATGGGAAAGAATTCGAAGTAGTCTCAGTGAAAACAGTCGCCAAACTCTACCTTGCCCATCAGGCATTCATCCTAATGGTGCTTGTTCATGCGACTCGTTCTCAAGGGTCGAACACTCGAGTACCCGTGCAAGCATATCGCGGATAATCATGCTTGCTGAAGCACTATTTGAGGTACTTTTTTGAGTTCCAAGTGCTGTGTAATTCAACAGGTATCTCACATCTTGTTCTTTGTGTATCTAAAGGTCTTGGATGAAATTCATGGTCAGCCTGTTTCTCTTGCTCTATCCATGGTTTCACTGCCTGCACCAGAATCAGTTGTTGACTCTTTTCCTTTGAAGAACCACGAAAAGAAAACTAATGGAGGGGATGAAATTGAGCAGTAGGTTCCCTCTTTTCCTTAACCAAGTACTCTTGTTTAGTTTCTAATGTGGGATTGTTTACAAATGCTTGGTTAGATGCTACATTTGCCTTGCCGATTACGAAGACGGTGACAAAATAAGAGTCCTTCCTTGCCACCACGAGTATCATATGTCGTGCGTCGATAAATGGTTGAAGGAGATTCATGGGTATGTTGTGCCTATACATCATCAATTACTGCTCCCTTTTTATCTATTTTATGTCTAGGTATCATTTTACTCATGGATTCATCTCCCTGTATCACTGTGTTTAACAGAGTATGCCCACTTTGTAGAGGGGATGTTCGTGCAGGCACGAACGATGAATGTTCGATTTCAAACTTGGAAATTCCAACGACAATTTGATGAATTGTATAATCGATGACACTAGCGATAAGGAAACTTTCGTAATCCTGTTCCTTGTTAATACTGGGGATGAATTGAATCCCCATGGTTTTGTAAGGCATTCATATTGTACAGCTGTTTCAGAAGAAATATTTGCACAAGTTTTTAGTTTTACCCTGAGCATAAAAGCTCGAATGAATATCTGGAAAAGCCAGTTTGGTTTGAATCATGCAGACATTTGTACAATATACACCAAAAAAGGAACTGTATCAAGACAACAGATAACCAAGACAGGGAGACGGTAATTTCAGCTCTATGCTTACAAATACTTGAGAATTATAAGCACCAACACTGAAAGCCCTTTGGGCTTGCTAATATTGTTGTTGAAGAGATTTGGCTGGCACTTCTTGTCGTCGTCAAATGTCGTCCATCGCATCGAGTTGCTGCCATTATACGAGTATTTGAGGTTGGGATTTGTGGAGTTGAGCTCTGATTGGACTCGTGAAAGCTATTTCTTCAATCCTCTCGCCTAAAACCTTATGATTACGAACGAAATTAGGACACGAAAAACGAAACAAAAGCACCAATTTACAAGCAATTAGGACACGAAAACGAAACAAAAGCACCAATTTACAAGCCAACGCCATTGAAGCAATTCGTTACCTTGTCAATGAAGAAATCGGATGGAGAACCATTTGAATGCAACTTCCTTTTTATTATTTAGTGCTGGGAGCCTTCCCAATTGGACTCGTTGCAATCTGAATTGAACTTGGAAGAACCCCAAAAAGCTTCACTGTCCCATCTTTCATGGAGGTCCAATGGAGCTGTCTCATCCTCTGTTTCGTCTCTCTTCCATTTCGTCAACCCATTGAAGCCCCATTGCTTCTTTCCAGATTTGTTAATTTTTTCTTCAGAATCAGGGCCATA AAAACCCCATAATTCAATTTGAAATCAGGGAGCTCTGAATTGGGTGTTCTTCAAGTTTATCATCATCATCATCATCATCATCCATTCTTCTTCCCCAAAACCCAAATGGGTTCGAGCTGTAGTTGTCTGGGGTCGTCGCGCCCTTCTCGCTCCCGAGATTACCGCACCAACCGCTCCAAATTCTGCTCTCTTTTCTGCGGTGCTTCCTCTTCTCGCGCGATTCATCAGATGGAAGATTCTATGGTTCAATTTCTTGTCCACCCGGTGGAACATCAACACTGTAATCACAACATTGATGAACTTCAACTCCCCATAAATGGATCTATAAGAATGGGACAGAGCGCTTATTCTGAGAATGACATTGCAGTCAGTGAGGAGCAATGTGCTGTAGATGATATCAATGTTCATGGGAAGCGTGTGTCTCATAATAAGGAATTAGCTCCTCTTCCTCAGGTTAGTGCTGATTATAGCCATGAAGAATCTCGTAGCTATAGTAATGCTTCCAATGGTACTTCACGTAAAGGACATCAATCTTCCGAACCAGTCTGCACGAAGGTTATGTTTGCGGCGAGCAGTTCGACTACTCAAGAGATTGGAGACTCATGTTCCAATGAGCTGACAGGTTGCATTCAAGAGGACGAGGCAACAGCTTACCGGAACCCAGACTCTGAATCGTCGCCTTGTCGTCCTGATCTTTCATTAACTTTCCAGTCTCTTGGAGATGAATCTCTGCAAGAGGTACCCTCAAGTTTAGACACTCTTGTGTCTGATGATAGGGAGGTGGGCCAAGGAGATGTTGATATGGTCGGTGTTTCTTCCAATGTTTTGTCTACGAGTAGCACTGATGCAAGTAATCTTGAGGCTAGAAGGAATAGCAGAAGACTGTTTTGGGATGCCTTTTCAAGGCGTAGTTTCAGAAGGCATAGTGAGTCTCCGTTTGTTTTCCCATCTAATAACTTTAGTAATACAGGAGATCAAGACAGGTGGCTCCTTGATATAAGTGGCGATTTTATCGATGATGAAGCGAGTGGTGATTCAAGACGTTTTTCCAGCAGAATTCACGTCTTGAATGAACAACAAAGAAACTCAAGATCTCAGGTGCAGTTATGGGAAAGAATTCGAAGTAGTCTCAGTGAAAACAGTCGCCAAACTCTACCTTGCCCATCAGGCATTCATCCTAATGGTGCTTGTTCATGCGACTCGTTCTCAAGGGTCGAACACTCGAGTACCCGTGCAAGCATATCGCGGATAATCATGCTTGCTGAAGCACTATTTGAGGTCTTGGATGAAATTCATGGTCAGCCTGTTTCTCTTGCTCTATCCATGGTTTCACTGCCTGCACCAGAATCAGTTGTTGACTCTTTTCCTTTGAAGAACCACGAAAAGAAAACTAATGGAGGGGATGAAATTGAGCAATGCTACATTTGCCTTGCCGATTACGAAGACGGTGACAAAATAAGAGTCCTTCCTTGCCACCACGAGTATCATATGTCGTGCGTCGATAAATGGTTGAAGGAGATTCATGGAGTATGCCCACTTTGTAGAGGGGATGTTCGTGCAGGCACGAACGATGAATGTTCGATTTCAAACTTGGAAATTCCAACGACAATTTGATGAATTGTATAATCGATGACACTAGCGATAAGGAAACTTTCGTAATCCTGTTCCTTGTTAATACTGGGGATGAATTGAATCCCCATGGTTTTGTAAGGCATTCATATTGTACAGCTGTTTCAGAAGAAATATTTGCACAAGTTTTTAGTTTTACCCTGAGCATAAAAGCTCGAATGAATATCTGGAAAAGCCAGTTTGGTTTGAATCATGCAGACATTTGTACAATATACACCAAAAAAGGAACTGTATCAAGACAACAGATAACCAAGACAGGGAGACGGTAATTTCAGCTCTATGCTTACAAATACTTGAGAATTATAAGCACCAACACTGAAAGCCCTTTGGGCTTGCTAATATTGTTGTTGAAGAGATTTGGCTGGCACTTCTTGTCGTCGTCAAATGTCGTCCATCGCATCGAGTTGCTGCCATTATACGAGTATTTGAGGTTGGGATTTGTGGAGTTGAGCTCTGATTGGACTCGTGAAAGCTATTTCTTCAATCCTCTCGCCTAAAACCTTATGATTACGAACGAAAAATCGGATGGAGAACCATTTGAATGCAACTTCCTTTTTATTATTTAGTGCTGGGAGCCTTCCCAATTGGACTCGTTGCAATCTGAATTGAACTTGGAAGAACCCCAAAAAGCTTCACTGTCCCATCTTTCATGGAGGTCCAATGGAGCTGTCTCATCCTCTGTTTCGTCTCTCTTCCATTTCGTCAACCCATTGAAGCCCCATTGCTTCTTTCCAGATTTGTTAATTTTTTCTTCAGAATCAGGGCCATA ATGGGTTCGAGCTGTAGTTGTCTGGGGTCGTCGCGCCCTTCTCGCTCCCGAGATTACCGCACCAACCGCTCCAAATTCTGCTCTCTTTTCTGCGGTGCTTCCTCTTCTCGCGCGATTCATCAGATGGAAGATTCTATGGTTCAATTTCTTGTCCACCCGGTGGAACATCAACACTGTAATCACAACATTGATGAACTTCAACTCCCCATAAATGGATCTATAAGAATGGGACAGAGCGCTTATTCTGAGAATGACATTGCAGTCAGTGAGGAGCAATGTGCTGTAGATGATATCAATGTTCATGGGAAGCGTGTGTCTCATAATAAGGAATTAGCTCCTCTTCCTCAGGTTAGTGCTGATTATAGCCATGAAGAATCTCGTAGCTATAGTAATGCTTCCAATGGTACTTCACGTAAAGGACATCAATCTTCCGAACCAGTCTGCACGAAGGTTATGTTTGCGGCGAGCAGTTCGACTACTCAAGAGATTGGAGACTCATGTTCCAATGAGCTGACAGGTTGCATTCAAGAGGACGAGGCAACAGCTTACCGGAACCCAGACTCTGAATCGTCGCCTTGTCGTCCTGATCTTTCATTAACTTTCCAGTCTCTTGGAGATGAATCTCTGCAAGAGGTACCCTCAAGTTTAGACACTCTTGTGTCTGATGATAGGGAGGTGGGCCAAGGAGATGTTGATATGGTCGGTGTTTCTTCCAATGTTTTGTCTACGAGTAGCACTGATGCAAGTAATCTTGAGGCTAGAAGGAATAGCAGAAGACTGTTTTGGGATGCCTTTTCAAGGCGTAGTTTCAGAAGGCATAGTGAGTCTCCGTTTGTTTTCCCATCTAATAACTTTAGTAATACAGGAGATCAAGACAGGTGGCTCCTTGATATAAGTGGCGATTTTATCGATGATGAAGCGAGTGGTGATTCAAGACGTTTTTCCAGCAGAATTCACGTCTTGAATGAACAACAAAGAAACTCAAGATCTCAGGTGCAGTTATGGGAAAGAATTCGAAGTAGTCTCAGTGAAAACAGTCGCCAAACTCTACCTTGCCCATCAGGCATTCATCCTAATGGTGCTTGTTCATGCGACTCGTTCTCAAGGGTCGAACACTCGAGTACCCGTGCAAGCATATCGCGGATAATCATGCTTGCTGAAGCACTATTTGAGGTCTTGGATGAAATTCATGGTCAGCCTGTTTCTCTTGCTCTATCCATGGTTTCACTGCCTGCACCAGAATCAGTTGTTGACTCTTTTCCTTTGAAGAACCACGAAAAGAAAACTAATGGAGGGGATGAAATTGAGCAATGCTACATTTGCCTTGCCGATTACGAAGACGGTGACAAAATAAGAGTCCTTCCTTGCCACCACGAGTATCATATGTCGTGCGTCGATAAATGGTTGAAGGAGATTCATGGAGTATGCCCACTTTGTAGAGGGGATGTTCGTGCAGGCACGAACGATGAATGTTCGATTTCAAACTTGGAAATTCCAACGACAATTTGA MGSSCSCLGSSRPSRSRDYRTNRSKFCSLFCGASSSRAIHQMEDSMVQFLVHPVEHQHCNHNIDELQLPINGSIRMGQSAYSENDIAVSEEQCAVDDINVHGKRVSHNKELAPLPQVSADYSHEESRSYSNASNGTSRKGHQSSEPVCTKVMFAASSSTTQEIGDSCSNELTGCIQEDEATAYRNPDSESSPCRPDLSLTFQSLGDESLQEVPSSLDTLVSDDREVGQGDVDMVGVSSNVLSTSSTDASNLEARRNSRRLFWDAFSRRSFRRHSESPFVFPSNNFSNTGDQDRWLLDISGDFIDDEASGDSRRFSSRIHVLNEQQRNSRSQVQLWERIRSSLSENSRQTLPCPSGIHPNGACSCDSFSRVEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI
BLAST of Carg27185 vs. NCBI nr
Match: XP_022932117.1 (E3 ubiquitin-protein ligase RNF12-B-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 980.7 bits (2534), Expect = 1.8e-282 Identity = 494/502 (98.41%), Postives = 497/502 (99.00%), Query Frame = 0
BLAST of Carg27185 vs. NCBI nr
Match: XP_022932122.1 (E3 ubiquitin-protein ligase RNF12-B-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 972.2 bits (2512), Expect = 6.6e-280 Identity = 492/502 (98.01%), Postives = 495/502 (98.61%), Query Frame = 0
BLAST of Carg27185 vs. NCBI nr
Match: XP_023530449.1 (E3 ubiquitin-protein ligase RNF12-A-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 971.1 bits (2509), Expect = 1.5e-279 Identity = 486/502 (96.81%), Postives = 492/502 (98.01%), Query Frame = 0
BLAST of Carg27185 vs. NCBI nr
Match: XP_023001605.1 (E3 ubiquitin-protein ligase RNF12-A-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 966.1 bits (2496), Expect = 4.7e-278 Identity = 487/502 (97.01%), Postives = 491/502 (97.81%), Query Frame = 0
BLAST of Carg27185 vs. NCBI nr
Match: XP_023530450.1 (E3 ubiquitin-protein ligase RNF12-B-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 962.6 bits (2487), Expect = 5.2e-277 Identity = 484/502 (96.41%), Postives = 490/502 (97.61%), Query Frame = 0
BLAST of Carg27185 vs. TAIR10
Match: AT5G45290.2 (RING/U-box superfamily protein) HSP 1 Score: 147.9 bits (372), Expect = 1.7e-35 Identity = 84/177 (47.46%), Postives = 111/177 (62.71%), Query Frame = 0
BLAST of Carg27185 vs. TAIR10
Match: AT4G09560.1 (Protease-associated (PA) RING/U-box zinc finger family protein) HSP 1 Score: 77.4 bits (189), Expect = 2.8e-14 Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 0
BLAST of Carg27185 vs. TAIR10
Match: AT1G71980.1 (Protease-associated (PA) RING/U-box zinc finger family protein) HSP 1 Score: 73.9 bits (180), Expect = 3.1e-13 Identity = 38/95 (40.00%), Postives = 48/95 (50.53%), Query Frame = 0
BLAST of Carg27185 vs. TAIR10
Match: AT3G19910.1 (RING/U-box superfamily protein) HSP 1 Score: 72.4 bits (176), Expect = 8.9e-13 Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 0
BLAST of Carg27185 vs. TAIR10
Match: AT4G11680.1 (Zinc finger, C3HC4 type (RING finger) family protein) HSP 1 Score: 70.9 bits (172), Expect = 2.6e-12 Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of Carg27185 vs. Swiss-Prot
Match: sp|Q91XF4|RN167_MOUSE (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 4.1e-15 Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of Carg27185 vs. Swiss-Prot
Match: sp|Q5XIL0|RN167_RAT (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 5.3e-15 Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of Carg27185 vs. Swiss-Prot
Match: sp|Q9H6Y7|RN167_HUMAN (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 9.1e-15 Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of Carg27185 vs. Swiss-Prot
Match: sp|Q90972|RNF13_CHICK (E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus OX=9031 GN=RNF13 PE=1 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 1.7e-13 Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = 0
BLAST of Carg27185 vs. Swiss-Prot
Match: sp|O54965|RNF13_MOUSE (E3 ubiquitin-protein ligase RNF13 OS=Mus musculus OX=10090 GN=Rnf13 PE=1 SV=2) HSP 1 Score: 79.0 bits (193), Expect = 1.7e-13 Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 0
BLAST of Carg27185 vs. TrEMBL
Match: tr|A0A1S4DV08|A0A1S4DV08_CUCME (E3 ubiquitin-protein ligase RNF12-A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487388 PE=4 SV=1) HSP 1 Score: 775.0 bits (2000), Expect = 1.0e-220 Identity = 414/541 (76.52%), Postives = 440/541 (81.33%), Query Frame = 0
BLAST of Carg27185 vs. TrEMBL
Match: tr|A0A1S3B977|A0A1S3B977_CUCME (uncharacterized protein LOC103487388 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487388 PE=4 SV=1) HSP 1 Score: 766.9 bits (1979), Expect = 2.8e-218 Identity = 412/541 (76.16%), Postives = 438/541 (80.96%), Query Frame = 0
BLAST of Carg27185 vs. TrEMBL
Match: tr|A0A0A0LTU1|A0A0A0LTU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265080 PE=4 SV=1) HSP 1 Score: 763.5 bits (1970), Expect = 3.1e-217 Identity = 412/543 (75.87%), Postives = 437/543 (80.48%), Query Frame = 0
BLAST of Carg27185 vs. TrEMBL
Match: tr|A0A2I4HNQ7|A0A2I4HNQ7_9ROSI (E3 ubiquitin ligase BIG BROTHER-related-like OS=Juglans regia OX=51240 GN=LOC109019821 PE=4 SV=1) HSP 1 Score: 464.2 bits (1193), Expect = 3.8e-127 Identity = 289/543 (53.22%), Postives = 351/543 (64.64%), Query Frame = 0
BLAST of Carg27185 vs. TrEMBL
Match: tr|A0A2P4JK12|A0A2P4JK12_QUESU (Receptor likey region, transmembrane domain-and ring domain-containing protein 4 OS=Quercus suber OX=58331 GN=CFP56_38048 PE=4 SV=1) HSP 1 Score: 461.1 bits (1185), Expect = 3.3e-126 Identity = 295/545 (54.13%), Postives = 349/545 (64.04%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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