Carg27189-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27189-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Serine-rich protein-related
Location	Cucurbita_argyrosperma_scaffold_486 : 38480 .. 38818 (+)
Sequence length	339

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACAAAATCTAGATCCGTCAATTCCAAATTGCAGAGCGTCGGCAGTTCACGCAAGTGCCTCTGTTCTCCGACCACCCATCCCGGTTCTTTCCGCTGCAGTTTTCACCGGAACCGCCGCAAGGCCTCCGCTAGGTCATCGTCATCATCTATTACTGCCATTACCAGTGCGCAGTTGGAGCTTACGGTGTTCGCGAAGGCCAATGCGGTGAGGGCGTTTCTTCTGCACATCATCAGGCCGTCCAGTAACGATCTTCAGCGGCGGAGGAATTTTCATCCCAGACCTTCCAGGTTTTGCTTGATGAACAAACACGGAACTGGATTGGCTGTTTCTTGA

mRNA sequence

ATGGCCACAAAATCTAGATCCGTCAATTCCAAATTGCAGAGCGTCGGCAGTTCACGCAAGTGCCTCTGTTCTCCGACCACCCATCCCGGTTCTTTCCGCTGCAGTTTTCACCGGAACCGCCGCAAGGCCTCCGCTAGGTCATCGTCATCATCTATTACTGCCATTACCAGTGCGCAGTTGGAGCTTACGGTGTTCGCGAAGGCCAATGCGGTGAGGGCGTTTCTTCTGCACATCATCAGGCCGTCCAGTAACGATCTTCAGCGGCGGAGGAATTTTCATCCCAGACCTTCCAGGTTTTGCTTGATGAACAAACACGGAACTGGATTGGCTGTTTCTTGA

Coding sequence (CDS)

ATGGCCACAAAATCTAGATCCGTCAATTCCAAATTGCAGAGCGTCGGCAGTTCACGCAAGTGCCTCTGTTCTCCGACCACCCATCCCGGTTCTTTCCGCTGCAGTTTTCACCGGAACCGCCGCAAGGCCTCCGCTAGGTCATCGTCATCATCTATTACTGCCATTACCAGTGCGCAGTTGGAGCTTACGGTGTTCGCGAAGGCCAATGCGGTGAGGGCGTTTCTTCTGCACATCATCAGGCCGTCCAGTAACGATCTTCAGCGGCGGAGGAATTTTCATCCCAGACCTTCCAGGTTTTGCTTGATGAACAAACACGGAACTGGATTGGCTGTTTCTTGA

Protein sequence

MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQLELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS

Homology

[Close]

BLAST of Carg27189-RA vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata])

HSP 1 Score: 217.6 bits (553), Expect = 2.1e-53
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60
           MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 113
           ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Carg27189-RA vs. NCBI nr
Match: XP_023530962.1 (uncharacterized protein LOC111793349 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.2 bits (544), Expect = 2.3e-52
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60
           MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 113
           ELTV+AKANAVRAFLLHIIRPSSNDLQRRRNFHP PSRFCLMNKHGTGLAVS
Sbjct: 61  ELTVYAKANAVRAFLLHIIRPSSNDLQRRRNFHPSPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Carg27189-RA vs. NCBI nr
Match: XP_023003805.1 (uncharacterized protein LOC111497277 [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 3.4e-51
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60
           MATKSRS NSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSI+AITSAQL
Sbjct: 1   MATKSRSANSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSISAITSAQL 60

Query: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 113
           ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNF PRPSRFCLMNKHGTGLAVS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFLPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Carg27189-RA vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.5 bits (454), Expect = 6.4e-42
Identity = 91/112 (81.25%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60
           MA+KS S N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI AIT+AQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 113
           +LT+ AKANA+R+FLL II PSS DLQRRRNF P+PSRFCLMN HGTGLAVS
Sbjct: 61  KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of Carg27189-RA vs. NCBI nr
Match: XP_022921799.1 (uncharacterized protein LOC111429944 [Cucurbita moschata])

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 90/112 (80.36%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60
           MA+KS S N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI AIT+AQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 113
           +LT+ AKANA+R+FL  II PSS DLQRRRNF P+PSRFCLMN HGTGLAVS
Sbjct: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of Carg27189-RA vs. TAIR10
Match: AT5G11090.1 (serine-rich protein-related)

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-12
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 18  SRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSIT--------AITSAQLELTVFAKAN 77
           SR+C+CSPTTHPGSFRCS H+N      + ++S  T        A+T++ + +    +  
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIG-GVEGE 179

Query: 78  AVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNK 105
            VR  L  +IRPSS+ L+RR  + PRPSR  +M K
Sbjct: 180 WVRRALTTLIRPSSHHLKRRAAYQPRPSRLSIMAK 213

[Close]

BLAST of Carg27189-RA vs. TAIR10
Match: AT5G25280.1 (serine-rich protein-related)

HSP 1 Score: 63.5 bits (153), Expect = 9.3e-11
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSIT------- 60
           +A  S   ++  +   S R+C+CSPTTHPGSFRCS H+N      + ++S  T       
Sbjct: 106 IAVSSNKPSNHHKIPDSRRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRR 165

Query: 61  -AITSAQLELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNK 105
            A+T++ + +    +   VR  L  +IRPSS+ L+RR  + PR SR   M+K
Sbjct: 166 SAMTNSLVRIG-GVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMSK 216

[Close]

BLAST of Carg27189-RA vs. TAIR10
Match: AT5G20370.1 (serine-rich protein-related)

HSP 1 Score: 57.4 bits (137), Expect = 6.6e-09
Identity = 39/104 (37.50%), Postives = 51/104 (49.04%), Query Frame = 0


Query: 17  SSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSI---------TAITSAQLELTVFAK 76
           + RKCLCSPTTHPGSFRCSFHR      +++ +SS          T   +  L L   A 
Sbjct: 67  TKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLAL 126

Query: 77  ANAV------------RAFLLHIIRPSSNDLQRRRNFHPRPSRF 100
            N++            R+   ++ +PSS    RR  F PR SRF
Sbjct: 127 MNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

[Close]

BLAST of Carg27189-RA vs. TAIR10
Match: AT1G67910.1 (unknown protein)

HSP 1 Score: 42.0 bits (97), Expect = 2.9e-04
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 0


Query: 13 QSVGSSRKCLCSPTTHPGSFRCSFHRN 40
          Q+  +   CLCSPTTHPGSFRC  HR+
Sbjct: 36 QTSMTKTNCLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of Carg27189-RA vs. TAIR10
Match: AT3G13227.1 (serine-rich protein-related)

HSP 1 Score: 42.0 bits (97), Expect = 2.9e-04
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 0


Query: 10 SKLQSVGSSRKCLCSPTTHPGSFRCSFHR 39
          SK  SV   + CLC+PTTHPGSFRC +HR
Sbjct: 56 SKSSSV--RQNCLCAPTTHPGSFRCRYHR 82

[Close]

BLAST of Carg27189-RA vs. TrEMBL
Match: tr|A0A1S3B8Q0|A0A1S3B8Q0_CUCME (uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.0e-32
Identity = 79/112 (70.54%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60
           MA+KS S   K  S   SRKCLCSPTTHPGSFRCSFHR R K S+  SSS      SA+L
Sbjct: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSS------SAEL 60

Query: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 113
           EL   AKANA+RAFLL +I+PSSND+QRRRNFHPRPSRFCLMN HGTGL VS
Sbjct: 61  EL---AKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103

[Close]

BLAST of Carg27189-RA vs. TrEMBL
Match: tr|A0A0A0LYY6|A0A0A0LYY6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-31
Identity = 78/113 (69.03%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRK-ASARSSSSSITAITSAQ 60
           MA+KS S   K  + G+SRKCLCSPTTHPGSFRCSFHRNR K +S          IT+A 
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSXXXXXXXXXLITTAD 60

Query: 61  LELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 113
           LEL   AKANA+R+FLL +I+PSSNDLQRRRNFHPRPSRFCLMN H TGLAVS
Sbjct: 61  LEL---AKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

[Close]

BLAST of Carg27189-RA vs. TrEMBL
Match: tr|B9SZN1|B9SZN1_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1372180 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.5e-26
Identity = 66/112 (58.93%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60
           MA+K+ S NSK  +   +R CLCSPTTHPGSFRCS HRN  + S RS ++    ++  + 
Sbjct: 1   MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSNRSRTAH---VSPRKW 60

Query: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 113
           EL+V AKAN+++AFLL II+PSS+DLQRRRNF PRP+RFCLMN +  G+AVS
Sbjct: 61  ELSVIAKANSLKAFLLQIIKPSSHDLQRRRNFQPRPTRFCLMNANRDGVAVS 109

[Close]

BLAST of Carg27189-RA vs. TrEMBL
Match: tr|I3NMS2|I3NMS2_HEVBR (Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.0e-25
Identity = 70/114 (61.40%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 1   MATKSRSVNSKLQSVGSS--RKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSA 60
           MA+K    +SK Q   S+  R CLCSPT HPGSFRCS HRN R+   RSSSS+       
Sbjct: 1   MASKRAPSDSKSQQQQSAQGRICLCSPTKHPGSFRCSLHRNFRRVPGRSSSSN------- 60

Query: 61  QLELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 113
           + EL V AKAN++RAFLL II+PSS+DLQRRRNF PRPSRFCLMN +  G AVS
Sbjct: 61  KGELAVIAKANSLRAFLLQIIKPSSHDLQRRRNFRPRPSRFCLMNANRDGFAVS 107

[Close]

BLAST of Carg27189-RA vs. TrEMBL
Match: tr|A0A2P5DX22|A0A2P5DX22_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_239540 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.8e-24
Identity = 66/113 (58.41%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60
           MATK+ + + K   VG  R CLCSPTTHPGSFRCS HRN  K      S++   +TS   
Sbjct: 1   MATKNTASSQKRHVVG--RTCLCSPTTHPGSFRCSLHRNPHK----PRSATTVRVTSGPW 60

Query: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGT-GLAVS 113
           E  + AKAN+++AFLL II+PSS+DL RRRNF PRPSRFCLMN + T G+AVS
Sbjct: 61  EAAMVAKANSIKAFLLQIIKPSSHDLHRRRNFKPRPSRFCLMNNNNTDGVAVS 107

The following BLAST results are available for this feature:

BLAST of Carg27189-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927032.1	2.1e-53	100.00	uncharacterized protein LOC111433980 [Cucurbita moschata]	[more]
XP_023530962.1	2.3e-52	98.21	uncharacterized protein LOC111793349 [Cucurbita pepo subsp. pepo]	[more]
XP_023003805.1	3.4e-51	97.32	uncharacterized protein LOC111497277 [Cucurbita maxima]	[more]
XP_023515429.1	6.4e-42	81.25	uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo]	[more]
XP_022921799.1	3.2e-41	80.36	uncharacterized protein LOC111429944 [Cucurbita moschata]	[more]

BLAST of Carg27189-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11090.1	3.8e-12	42.11	serine-rich protein-related	[more]
AT5G25280.1	9.3e-11	36.61	serine-rich protein-related	[more]
AT5G20370.1	6.6e-09	37.50	serine-rich protein-related	[more]
AT1G67910.1	2.9e-04	62.96	unknown protein	[more]
AT3G13227.1	2.9e-04	65.52	serine-rich protein-related	[more]

BLAST of Carg27189-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27189-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B8Q0\|A0A1S3B8Q0_CUCME	3.0e-32	70.54	uncharacterized protein LOC103487396 OS=Cucumis melo OX=3656 GN=LOC103487396 PE=...	[more]
tr\|A0A0A0LYY6\|A0A0A0LYY6_CUCSA	2.0e-31	69.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1	[more]
tr\|B9SZN1\|B9SZN1_RICCO	5.5e-26	58.93	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1372180 PE=4 SV=1	[more]
tr\|I3NMS2\|I3NMS2_HEVBR	8.0e-25	61.40	Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1	[more]
tr\|A0A2P5DX22\|A0A2P5DX22_9ROSA	6.8e-24	58.41	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_239540 PE=4 S...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg27189	Carg27189	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27189-RA.exon.1	Carg27189-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg27189-RA.CDS.1	Carg27189-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg27189-RA	Carg27189-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR33132:SF28	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 2..111
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 2..111