Carg12099-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12099-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	U3 small nucleolar RNA-associated protein, putative
Location	Cucurbita_argyrosperma_scaffold_037 : 1219429 .. 1221351 (+)
Sequence length	1435

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAAGGGAAGAGGCAGCTGCTGAAGAAGCCAAGCTTGCCATCCAGGAGTTCGAATCGCTCTCAAAGCAGCTTAATAATTCTGAGACAGAGAATATAAAGACAGAAACTACTAGTGGTAGAAGAACCTTTGGTGGAATTAAAAAATCTGCTCCAGAACCAAGGAAGAAGACAAAGCCAGAATATTATGGTGATACAGACGATGAAGATGACACTGAGACTCGAGAAGGCGTGGAGGATGCTGGGGATGATAAAAATAGCAGTTTAATTGTTGATGAAAATATTGGTTCTGATATTCTCGGCGCAGACTCGAAAAGGCATCATAGTTCAGTTTTTAAAGTATGAAATGTTTCTTTAAATTCTTAAGTCTGTCTCTGGTACATTTAAATTCTTCTTATTGCTGAATTAGCGTTCTTTTCCTTCTATCTTCTTGCCCAGAGCTTTGATGAAACTGTTAGAGATCCGGGTCCTAAGACGACGTATGAAGTTGCCATTTTTGCATCAGACACATGGAAAAAGGTTGAATGTTTTGTTCTTTCATTGTTTGTTTAATCATCTCCTCTTTGTAGAAACATTTTCTTTTGAGCAAAATGTTTATAAAACTAGTATGTGTTCTATATATGCAGGCAAAAAATCTTGTAAAAAAAGTGGATTCTGCATCCACCGCCACTGCATCTAAACCAGCTTTACAAGGTCAAGTTCCAAAGGTATGACCGTTTTCATCTATCAATTTTGGTGGTGTTATGATTGTTGTATTTGTTTGATGGCATTATATTTCTCCTTGATCTGGTACAGGAAACTGTGCAAGATGTGGATGATCAAAGCGACTCGGACCACGAGCTGATGGTCGAAGGGGTTTTGTCCTCAGCTAATAATGAGGCTTATGAACTTCCATCTCAAGCAGAGTTGATTCACCAAGCTTTTGCTGGAGACAACGTAGAGGAAGAATTTGAGAGGCAAAAAGAGGAAATTCTTAATGAAGAAAATCCTGAACCTGAAAAGCCTGTTCTACTACCTGGATGGGGCCAATGGACTAATGTCCAGAAGAAAAAAGGCTTACCTTCTTGGATGCTGGAAGAACATGACCGTGCAAACAAGAAGAGGCAGGAAGTTCTCAAGAACAGGAAGGATGCAAATCTCAAACATGTTATCATCTCTGAGAAATTGGATAAAAAGGTCAGTTGCTCAGCATTTGTGAAAGTTTCTAATAGATCTACTTCCCATGAACCTTTTGATATTGTCTGTTCTTGTGCATCATTCGTTTTGCCATTTCAATTTGACAGGCTGAGAAACTCTATACAAAGACACTGCCTTTTCCTTATACGGCGAAGGAGGTATTTGAGCAGAGCATCCGTATGCCTATCGGCCCCGACTTCAACCCGACATCTGCAATCGGAGCTCTTAATCGTCCCGAGGTCAGCAACTCATTTTGCATTAAAATTACTGATAGACCCTTCTTTATATTCCTAATAAGAGCTCCTCCTCGACATTCCTTTACACAGGTTGTGAAGAAGTCTGGAGTCATTATAAAACCGATCGAGTTTAAGGAAGTTGATACGCAACGAAAAGTCGAGGAGCACAAACAGAGTGGACAGAAACAAAAGAGAAAAAAAAGTAAAACCAACAATGGAAAATCGGTCAAGAAGATGAAAGCTGGGGCCTAATATCCAGTTGATGTCTACTACACCTTGAAGGACAGCCATGGTTTTTAGAGAGCATTCATGGCTTTCCTTTTGGCGAGGCTCGCTGCAGGCAAAGGTAAGAAGATCTAATTTGTAAAAGGTTTTGATAAATTTTGAAACGAGGCAATCTGATAATAGTGTTAGGCTTTTATTTATGTTCTATTTGTATGATTTTTTGTTCAATACAATTTTGATCTGTATAATTATTATCTTCTTTTTTTATATGAAACGTAGATTG

mRNA sequence

ATGAAGAAAAGGGAAGAGGCAGCTGCTGAAGAAGCCAAGCTTGCCATCCAGGAGTTCGAATCGCTCTCAAAGCAGCTTAATAATTCTGAGACAGAGAATATAAAGACAGAAACTACTAGTGGTAGAAGAACCTTTGGTGGAATTAAAAAATCTGCTCCAGAACCAAGGAAGAAGACAAAGCCAGAATATTATGGTGATACAGACGATGAAGATGACACTGAGACTCGAGAAGGCGTGGAGGATGCTGGGGATGATAAAAATAGCAGTTTAATTGTTGATGAAAATATTGGTTCTGATATTCTCGGCGCAGACTCGAAAAGGCATCATAGTTCAGTTTTTAAAAGCTTTGATGAAACTGTTAGAGATCCGGGTCCTAAGACGACGTATGAAGTTGCCATTTTTGCATCAGACACATGGAAAAAGGCAAAAAATCTTGTAAAAAAAGTGGATTCTGCATCCACCGCCACTGCATCTAAACCAGCTTTACAAGGTCAAGTTCCAAAGGAAACTGTGCAAGATGTGGATGATCAAAGCGACTCGGACCACGAGCTGATGGTCGAAGGGGTTTTGTCCTCAGCTAATAATGAGGCTTATGAACTTCCATCTCAAGCAGAGTTGATTCACCAAGCTTTTGCTGGAGACAACGTAGAGGAAGAATTTGAGAGGCAAAAAGAGGAAATTCTTAATGAAGAAAATCCTGAACCTGAAAAGCCTGTTCTACTACCTGGATGGGGCCAATGGACTAATGTCCAGAAGAAAAAAGGCTTACCTTCTTGGATGCTGGAAGAACATGACCGTGCAAACAAGAAGAGGCAGGAAGTTCTCAAGAACAGGAAGGATGCAAATCTCAAACATGTTATCATCTCTGAGAAATTGGATAAAAAGGCTGAGAAACTCTATACAAAGACACTGCCTTTTCCTTATACGGCGAAGGAGGTATTTGAGCAGAGCATCCGTATGCCTATCGGCCCCGACTTCAACCCGACATCTGCAATCGGAGCTCTTAATCGTCCCGAGGTTGTGAAGAAGTCTGGAGTCATTATAAAACCGATCGAGTTTAAGGAAGTTGATACGCAACGAAAAGTCGAGGAGCACAAACAGAGTGGACAGAAACAAAAGAGAAAAAAAAGTAAAACCAACAATGGAAAATCGGTCAAGAAGATGAAAGCTGGGGCCTAATATCCAGTTGATGTCTACTACACCTTGAAGGACAGCCATGGTTTTTAGAGAGCATTCATGGCTTTCCTTTTGGCGAGGCTCGCTGCAGGCAAAGGTAAGAAGATCTAATTTGTAAAAGGTTTTGATAAATTTTGAAACGAGGCAATCTGATAATAGTGTTAGGCTTTTATTTATGTTCTATTTGTATGATTTTTTGTTCAATACAATTTTGATCTGTATAATTATTATCTTCTTTTTTTATATGAAACGTAGATTG

Coding sequence (CDS)

ATGAAGAAAAGGGAAGAGGCAGCTGCTGAAGAAGCCAAGCTTGCCATCCAGGAGTTCGAATCGCTCTCAAAGCAGCTTAATAATTCTGAGACAGAGAATATAAAGACAGAAACTACTAGTGGTAGAAGAACCTTTGGTGGAATTAAAAAATCTGCTCCAGAACCAAGGAAGAAGACAAAGCCAGAATATTATGGTGATACAGACGATGAAGATGACACTGAGACTCGAGAAGGCGTGGAGGATGCTGGGGATGATAAAAATAGCAGTTTAATTGTTGATGAAAATATTGGTTCTGATATTCTCGGCGCAGACTCGAAAAGGCATCATAGTTCAGTTTTTAAAAGCTTTGATGAAACTGTTAGAGATCCGGGTCCTAAGACGACGTATGAAGTTGCCATTTTTGCATCAGACACATGGAAAAAGGCAAAAAATCTTGTAAAAAAAGTGGATTCTGCATCCACCGCCACTGCATCTAAACCAGCTTTACAAGGTCAAGTTCCAAAGGAAACTGTGCAAGATGTGGATGATCAAAGCGACTCGGACCACGAGCTGATGGTCGAAGGGGTTTTGTCCTCAGCTAATAATGAGGCTTATGAACTTCCATCTCAAGCAGAGTTGATTCACCAAGCTTTTGCTGGAGACAACGTAGAGGAAGAATTTGAGAGGCAAAAAGAGGAAATTCTTAATGAAGAAAATCCTGAACCTGAAAAGCCTGTTCTACTACCTGGATGGGGCCAATGGACTAATGTCCAGAAGAAAAAAGGCTTACCTTCTTGGATGCTGGAAGAACATGACCGTGCAAACAAGAAGAGGCAGGAAGTTCTCAAGAACAGGAAGGATGCAAATCTCAAACATGTTATCATCTCTGAGAAATTGGATAAAAAGGCTGAGAAACTCTATACAAAGACACTGCCTTTTCCTTATACGGCGAAGGAGGTATTTGAGCAGAGCATCCGTATGCCTATCGGCCCCGACTTCAACCCGACATCTGCAATCGGAGCTCTTAATCGTCCCGAGGTTGTGAAGAAGTCTGGAGTCATTATAAAACCGATCGAGTTTAAGGAAGTTGATACGCAACGAAAAGTCGAGGAGCACAAACAGAGTGGACAGAAACAAAAGAGAAAAAAAAGTAAAACCAACAATGGAAAATCGGTCAAGAAGATGAAAGCTGGGGCCTAA

Protein sequence

MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGGIKKSAPEPRKKTKPEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDETVRDPGPKTTYEVAIFASDTWKKAKNLVKKVDSASTATASKPALQGQVPKETVQDVDDQSDSDHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVLLPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEKLYTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVDTQRKVEEHKQSGQKQKRKKSKTNNGKSVKKMKAGA

Homology

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BLAST of Carg12099-RA vs. NCBI nr
Match: XP_023514378.1 (U3 small nucleolar RNA-associated protein 14 homolog A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 716.1 bits (1847), Expect = 6.6e-203
Identity = 386/392 (98.47%), Postives = 389/392 (99.23%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGGIKKSAPEPRKKTK 60
           MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGG+KKSAPEPRKKTK
Sbjct: 510 MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGGMKKSAPEPRKKTK 569

Query: 61  PEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDETV 120
           PEYYGDTDDEDDTETREGVEDAGDDKN+SLIVDENIGSDILGADSKRHHSSVFKSFDETV
Sbjct: 570 PEYYGDTDDEDDTETREGVEDAGDDKNTSLIVDENIGSDILGADSKRHHSSVFKSFDETV 629

Query: 121 RDPGPKTTYEVAIFASDTWKKAKNLVKKVDSASTATASKPALQGQVPKETVQDVDDQSDS 180
           RDPGPKTTYEVAIFASDTWKKAKNL KKVDS STATASKPALQGQVPKETVQDVDDQSDS
Sbjct: 630 RDPGPKTTYEVAIFASDTWKKAKNLEKKVDSTSTATASKPALQGQVPKETVQDVDDQSDS 689

Query: 181 DHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVL 240
           DHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVL
Sbjct: 690 DHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVL 749

Query: 241 LPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEKLY 300
           LPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQE+LKNRKDANLKHVIISEKLDKKAEKLY
Sbjct: 750 LPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEILKNRKDANLKHVIISEKLDKKAEKLY 809

Query: 301 TKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVDTQR 360
           TKTLPFPYTAKEVFEQSIRMPIGPDFNPTS IGALNRPEVVKKSGVIIKPIEFKEVDTQR
Sbjct: 810 TKTLPFPYTAKEVFEQSIRMPIGPDFNPTSTIGALNRPEVVKKSGVIIKPIEFKEVDTQR 869

Query: 361 KVEEHKQSGQXXXXXXXXXXNGKSVKKMKAGA 393
           KVEEHKQSGQXXXXXXXXXXNGKSVKKMKAGA
Sbjct: 870 KVEEHKQSGQXXXXXXXXXXNGKSVKKMKAGA 901

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BLAST of Carg12099-RA vs. NCBI nr
Match: XP_022960057.1 (U3 small nucleolar RNA-associated protein 14 homolog A [Cucurbita moschata])

HSP 1 Score: 710.7 bits (1833), Expect = 2.8e-201
Identity = 378/392 (96.43%), Postives = 381/392 (97.19%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGGIKKSAPEPRKKTK 60
           MKKREEAAAEEAKLAIQEFE LSKQLNNSETENIKTETTSGRRTFGG+KKSAPEPRKKTK
Sbjct: 511 MKKREEAAAEEAKLAIQEFELLSKQLNNSETENIKTETTSGRRTFGGMKKSAPEPRKKTK 570

Query: 61  PEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDETV 120
           PEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDETV
Sbjct: 571 PEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDETV 630

Query: 121 RDPGPKTTYEVAIFASDTWKKAKNLVKKVDSASTATASKPALQGQVPKETVQDVDDQSDS 180
           RDPGPKTTYEVAIFASDTWKKAKN+ KKVDSASTATASKPALQG VPKETVQDVDDQSDS
Sbjct: 631 RDPGPKTTYEVAIFASDTWKKAKNIEKKVDSASTATASKPALQGPVPKETVQDVDDQSDS 690

Query: 181 DHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVL 240
           DHELMVEGV SSANN+AYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVL
Sbjct: 691 DHELMVEGVFSSANNKAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVL 750

Query: 241 LPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEKLY 300
           LPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEKLY
Sbjct: 751 LPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEKLY 810

Query: 301 TKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVDTQR 360
           TKTLPFPYTAKEVFEQSIRMPIGPDFNPTS IGALNRPEVVKKSGVIIKPIEFKEVDTQR
Sbjct: 811 TKTLPFPYTAKEVFEQSIRMPIGPDFNPTSTIGALNRPEVVKKSGVIIKPIEFKEVDTQR 870

Query: 361 KVEEHKQSGQXXXXXXXXXXNGKSVKKMKAGA 393
           KVEEHKQSGQ  XXXX    NGKSVKKMKAGA
Sbjct: 871 KVEEHKQSGQKQXXXXSKTNNGKSVKKMKAGA 902

[Close]

BLAST of Carg12099-RA vs. NCBI nr
Match: XP_023004450.1 (U3 small nucleolar RNA-associated protein 14 homolog A [Cucurbita maxima])

HSP 1 Score: 708.0 bits (1826), Expect = 1.8e-200
Identity = 383/392 (97.70%), Postives = 385/392 (98.21%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGGIKKSAPEPRKKTK 60
           MKKREEAAAEEAKLAIQEFE LSKQLNNSETENIKTETTSGRRTFGG+KKSAPEPRKKTK
Sbjct: 515 MKKREEAAAEEAKLAIQEFELLSKQLNNSETENIKTETTSGRRTFGGMKKSAPEPRKKTK 574

Query: 61  PEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDETV 120
           PEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRH SSVFKSFDETV
Sbjct: 575 PEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHQSSVFKSFDETV 634

Query: 121 RDPGPKTTYEVAIFASDTWKKAKNLVKKVDSASTATASKPALQGQVPKETVQDVDDQSDS 180
           RDPGPKTTYEVAIFASDTWKKAKNL KKVDS STATASKPALQGQVPKETVQDVDDQ+DS
Sbjct: 635 RDPGPKTTYEVAIFASDTWKKAKNLEKKVDSTSTATASKPALQGQVPKETVQDVDDQNDS 694

Query: 181 DHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVL 240
           DHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVL
Sbjct: 695 DHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVL 754

Query: 241 LPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEKLY 300
           LPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEKLY
Sbjct: 755 LPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEKLY 814

Query: 301 TKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVDTQR 360
           TKTLPFPYT KEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVDTQR
Sbjct: 815 TKTLPFPYTTKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVDTQR 874

Query: 361 KVEEHKQSGQXXXXXXXXXXNGKSVKKMKAGA 393
           KVEEHKQSGQXXXXXXXXX NGKSVKKMKA A
Sbjct: 875 KVEEHKQSGQXXXXXXXXXNNGKSVKKMKAWA 906

[Close]

BLAST of Carg12099-RA vs. NCBI nr
Match: XP_022149059.1 (U3 small nucleolar RNA-associated protein 14 homolog A [Momordica charantia])

HSP 1 Score: 597.8 bits (1540), Expect = 2.6e-167
Identity = 326/395 (82.53%), Postives = 344/395 (87.09%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNNS-ETENIKTETTSGRRTFGGIKKSAPEPRKKT 60
           MKKREEAAAEEAKLA+QEFESLSKQLNNS ETENI T TTSGRRTFG +KK APEPR K 
Sbjct: 514 MKKREEAAAEEAKLALQEFESLSKQLNNSAETENINTGTTSGRRTFGAMKKPAPEPRNKM 573

Query: 61  KPE-YYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDE 120
           K E YYGDTD EDD E RE V DAGD K+SS +VD NIGSDI+  DSKRH  SVFKSFDE
Sbjct: 574 KSENYYGDTDGEDDNEAREEV-DAGDHKSSSPVVDVNIGSDIIYEDSKRHQHSVFKSFDE 633

Query: 121 TVRDPGPKTTYEVAIFASDTWKKAKNLVKKVDSASTATASKPALQGQVPKETVQDVDDQS 180
           TVRDPGPKTTYEV+IFASDTWKK KN  KK ++ + AT SKPALQ QVPKETVQDVDDQS
Sbjct: 634 TVRDPGPKTTYEVSIFASDTWKKVKNPEKKPNTTTAATKSKPALQRQVPKETVQDVDDQS 693

Query: 181 DSDHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKP 240
           +SDHELMVEG LSSANNE+YELPSQAELIH+AFAGDNVEEEFERQKEEILNEENPEPEKP
Sbjct: 694 ESDHELMVEGALSSANNESYELPSQAELIHEAFAGDNVEEEFERQKEEILNEENPEPEKP 753

Query: 241 VLLPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEK 300
           VLLPGWGQWT+VQKKKGLPSWMLEEHDRANKKRQE LKNRKDANLKHVIISEKLDKKAEK
Sbjct: 754 VLLPGWGQWTHVQKKKGLPSWMLEEHDRANKKRQEALKNRKDANLKHVIISEKLDKKAEK 813

Query: 301 LYTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVDT 360
           LYTKTLPFPY  K+VFE SIRMPIGPDFNP SAIGALNRPEVVKKSGVIIKPIE++EVD 
Sbjct: 814 LYTKTLPFPYKEKDVFEHSIRMPIGPDFNPASAIGALNRPEVVKKSGVIIKPIEYEEVDP 873

Query: 361 QRKVEEHKQSGQXXXXXXXXXXNGKSVKKM-KAGA 393
            RKVEE KQ GQ          +GK+ KKM KAGA
Sbjct: 874 HRKVEEQKQGGQKQKRKNGKSNSGKTAKKMKKAGA 907

[Close]

BLAST of Carg12099-RA vs. NCBI nr
Match: XP_008451562.1 (PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A isoform X2 [Cucumis melo])

HSP 1 Score: 594.3 bits (1531), Expect = 2.9e-166
Identity = 328/392 (83.67%), Postives = 351/392 (89.54%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGGIKKSAPEPRKKTK 60
           MKKREEAAAEEAK+AIQEFESLSKQLNNSETENI TET SGRRTFG +KKSAPEPRKKTK
Sbjct: 511 MKKREEAAAEEAKIAIQEFESLSKQLNNSETENIDTETNSGRRTFGSMKKSAPEPRKKTK 570

Query: 61  PEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDETV 120
            EYYGDTDDEDDTE RE VE  GD+  SSL  D NI SDIL  DSK H +SVFKSFDETV
Sbjct: 571 SEYYGDTDDEDDTEAREAVEYDGDNNKSSLFADANIDSDILCEDSKTHQNSVFKSFDETV 630

Query: 121 RDPGPKTTYEVAIFASDTWKKAKNLVKKVDS-ASTATASKPALQGQVPKETVQDVDDQSD 180
           RDPGPKTT+EVAIFAS TWKKAK+L K+VDS  ST  +SKP LQGQV KET+QDVDDQSD
Sbjct: 631 RDPGPKTTHEVAIFASGTWKKAKDLEKRVDSKPSTIVSSKPELQGQVTKETMQDVDDQSD 690

Query: 181 SDHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPV 240
           SD ELMV+GVLSSANNE+YELPSQ++LI QAFAGD+VEEEFE+QKEEILNEENPEPEKPV
Sbjct: 691 SDQELMVDGVLSSANNESYELPSQSDLIRQAFAGDDVEEEFEKQKEEILNEENPEPEKPV 750

Query: 241 LLPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEKL 300
           LLPGWGQWT+VQKKKGLPSWML+EH+ ANKKRQE LKNRKDANLKHVIISEK+DKKAEKL
Sbjct: 751 LLPGWGQWTHVQKKKGLPSWMLKEHELANKKRQEALKNRKDANLKHVIISEKVDKKAEKL 810

Query: 301 YTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVDTQ 360
           YTKTLPFPYT K+VFE SIRMPIGPDFNPTSA+GALNRPEVVKKSGVIIKPIEF+EVDT 
Sbjct: 811 YTKTLPFPYTEKDVFEHSIRMPIGPDFNPTSAVGALNRPEVVKKSGVIIKPIEFEEVDTH 870

Query: 361 RKVEEHKQSGQXXXXXXXXXXNGKSVKKMKAG 392
           +KVEEHKQ   XXXXXXXXXX   S KKMK G
Sbjct: 871 QKVEEHKQXXXXXXXXXXXXXXXXSAKKMKKG 902

[Close]

BLAST of Carg12099-RA vs. TAIR10
Match: AT4G02400.1 (U3 ribonucleoprotein (Utp) family protein)

HSP 1 Score: 291.6 bits (745), Expect = 7.3e-79
Identity = 175/367 (47.68%), Postives = 235/367 (64.03%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGGIKK-SAPEPRKKT 60
           MKK+ E A EEAK A  E++ L       E    K+   SGRR FG   K  AP+  KK 
Sbjct: 475 MKKKNEEANEEAKRAFGEYKELEN--FGGEDNPKKSADVSGRRVFGATSKVEAPKESKKD 534

Query: 61  KPEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFD-- 120
              +Y ++D ++D    EG+E            + ++G+    A   R+  ++ ++    
Sbjct: 535 SDNFYDNSDSDND---MEGIE------------NNDLGAVGDTASPARNTGAITETEKCC 594

Query: 121 ETVRDPGPKTTYEVAIFASDTWKKAKNLVKKVDSASTATASKPALQGQVPKETVQDVDDQ 180
             V +P  KTT++VA+FAS +WKK K   +  +S                          
Sbjct: 595 GDVENPASKTTFDVALFASGSWKKMKG-SQNAESKKAPKTXXXXXXXXXXXXXXXXXXXX 654

Query: 181 SDSDHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEK 240
                  MV+G+L+SA+ E YE+PSQAELI +AFAGD+V EEFE+ K+E+LN+E PEPEK
Sbjct: 655 XXXXXXQMVDGILTSASKETYEIPSQAELIQRAFAGDDVVEEFEKDKQEVLNQEVPEPEK 714

Query: 241 PVLLPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAE 300
           PVL+PGWGQWTNVQKK+GLPSWM+ EH+ ANKKR+  LK RKD  L++VIISEK+DKKA+
Sbjct: 715 PVLVPGWGQWTNVQKKRGLPSWMVREHEDANKKRKLDLKTRKDYRLRNVIISEKVDKKAD 774

Query: 301 KLYTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVD 360
           KL+T TLPFPYT+KEVFE S+RMPIGP+FNP + +GALNRPEVVKK+GVIIKP++F+EV+
Sbjct: 775 KLHTTTLPFPYTSKEVFEHSMRMPIGPEFNPATIVGALNRPEVVKKAGVIIKPVKFEEVN 823

Query: 361 TQRKVEE 365
              K ++
Sbjct: 835 PNEKADD 823

[Close]

BLAST of Carg12099-RA vs. TAIR10
Match: AT5G08600.2 (U3 ribonucleoprotein (Utp) family protein)

HSP 1 Score: 263.1 bits (671), Expect = 2.8e-70
Identity = 165/379 (43.54%), Postives = 228/379 (60.16%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGGIKKSAPEPRKKTK 60
           +KK+ E A EE K  I+E E    +   +ET   K+    GRR FG     AP+  +K  
Sbjct: 478 VKKKNEEAKEEGKRDIEELE----KFGGAETSK-KSTNVVGRRVFGA---EAPKESEKES 537

Query: 61  PEYYGDTD----DEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSF 120
              + ++D    D +D E     ++A   +N+  I++     DI G              
Sbjct: 538 DNLFDNSDSSDNDMEDNELEAVKDNASPARNTETIMEAEKLDDIAG-------------- 597

Query: 121 DETVRDPGPKTTYEVAIFASDTWKKAKNLVKKVDSASTATASKPALQGQVPKETVQDVDD 180
                +P  KTT++VA++AS +WKK     K  +S   +    P  Q Q  K        
Sbjct: 598 -----NPASKTTFDVALYASGSWKKMTG-CKNAESKKASKTHVPISQSQDKKXXXXXXXX 657

Query: 181 QSDSDHEL-----MVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEE 240
                        MV+G+L+  + E YE+P QAEL+ +AFAGD+VE +FE+ K+E+LN+E
Sbjct: 658 XXXXXXXXXXXXQMVDGILTCGSKETYEIPCQAELVSRAFAGDDVEGDFEKDKQEVLNQE 717

Query: 241 NPEPEKPVLLPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEK 300
            PEPEKPV + GWG WTN Q K+GLPS ++ EH+ A K R++ L+ RKDA+ KHVIISEK
Sbjct: 718 VPEPEKPVQVAGWGHWTNNQNKRGLPSRIVREHEEAKKTREQALRKRKDASFKHVIISEK 777

Query: 301 LDKKAEKLYTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPI 360
           +DKKAEKL TK+LP+PYT+KEVFEQS+RMPIGP+FNPT+ +G LNRPEVVKK+GVIIKP+
Sbjct: 778 VDKKAEKLQTKSLPYPYTSKEVFEQSMRMPIGPEFNPTTIVGVLNRPEVVKKAGVIIKPV 825

Query: 361 EFKEVDTQRKVEEHKQSGQ 371
           +F+EV+     +EH +S Q
Sbjct: 838 KFEEVNPN---DEHPRSHQ 825

[Close]

BLAST of Carg12099-RA vs. Swiss-Prot
Match: sp|P87137|YDM6_SCHPO (Uncharacterized protein C57A7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC57A7.06 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-18
Identity = 76/258 (29.46%), Postives = 139/258 (53.88%), Query Frame = 0


Query: 103 ADSKRHHSSVFKSFDET---VRDPGPKTTYEVAIFASDTWKKAKNLVKKVDSAST--ATA 162
           A++++   S  ++ +ET   ++ P  +T+    +  + +    KN   K+D  ++     
Sbjct: 681 AEARKKKESPLEATEETNPWLQVPDQRTSSAKKLDKNSSKADKKNHKLKMDKVASLQELV 740

Query: 163 SKPALQGQ-VPKETVQDVDDQSDSDHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNV 222
            +P +Q   + +E   +   +++SD ++ V  +  +    + +   Q EL+ +AFAGD+V
Sbjct: 741 EEPKVQPDLIFEEKAFESASEAESDVDVSVPMLKPTKGRLSIK---QRELVAKAFAGDDV 800

Query: 223 EEEFERQKEEILNEENPEPEKPVLLPGWGQW--TNVQKKKGLPSWMLEEHDRANKKRQEV 282
             EFE+ KE+ + E+ P+ E+   LPGWG W    V+++K  P        +  K     
Sbjct: 801 VAEFEKDKEDWVQEDAPK-EEDHSLPGWGSWGGVGVKQRKTKP--------KVKKIAGLD 860

Query: 283 LKNRKDANLKHVIISEKLDKKAEKLYTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGA 342
              RKD+ LKHVII+EK +KKA KL   ++PFP+ ++E +E+S+ +P+GP++   ++   
Sbjct: 861 PSKRKDSKLKHVIINEKRNKKAAKLTADSVPFPFESREQYERSLNLPMGPEWTTRASHHK 920

Query: 343 LNRPEVVKKSGVIIKPIE 353
              P VV K G +I PI+
Sbjct: 921 AVAPRVVTKRGKVINPIK 926

[Close]

BLAST of Carg12099-RA vs. Swiss-Prot
Match: sp|Q3T0Q8|UT14A_BOVIN (U3 small nucleolar RNA-associated protein 14 homolog A OS=Bos taurus OX=9913 GN=UTP14A PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.3e-18
Identity = 69/222 (31.08%), Postives = 113/222 (50.90%), Query Frame = 0


Query: 140 KKAKNLVKKVDSASTATASKPALQGQVPKETVQDVDDQSDSDHELMVEGVLSSANNEAYE 199
           K+ K   + +D  +  T   P+++      TVQ+++D+ + D                  
Sbjct: 548 KEKKRKEQMIDLQNLLTTKSPSVKSLAVPTTVQELEDEEERD------------------ 607

Query: 200 LPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVLLPGWGQWTNVQKKKGLPSW 259
              Q ++I +AFAGD+V  +F ++K E +    P+ +  + LPGWG+W  +  K   PS 
Sbjct: 608 ---QRQIIKEAFAGDDVIRDFLKEKREAVEASKPK-DLDLTLPGWGEWGGIGLK---PS- 667

Query: 260 MLEEHDRANKKRQEVLK-----NRKDANLKHVIISEKLDKKAEKLYTKTLPFPYTAKEVF 319
                  A K+R+ ++K      RKD NL +VII+EK +  A     + LP P+T  + F
Sbjct: 668 -------AKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNTHAAAHQVQVLPHPFTHHQQF 727

Query: 320 EQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEV 357
           E++I+ P+G  +N   A   L  P+VV K G IIKPI+ ++V
Sbjct: 728 ERTIQTPVGSTWNTQRAFQKLTMPKVVTKPGHIIKPIKAEDV 736

[Close]

BLAST of Carg12099-RA vs. Swiss-Prot
Match: sp|Q5TAP6|UT14C_HUMAN (U3 small nucleolar RNA-associated protein 14 homolog C OS=Homo sapiens OX=9606 GN=UTP14C PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.3e-18
Identity = 83/265 (31.32%), Postives = 126/265 (47.55%), Query Frame = 0


Query: 122 DPGPKTTYEVAIFASDTWKKAKNL--VKKVDSASTATASKPALQGQVPKETVQDVDD--- 181
           +P P+    + +  S+  +  + L  + K D        +P L+GQ  + T  +  D   
Sbjct: 489 EPAPEEAEPLLLQRSERVQTLEELEELGKEDCFQNKELPRPVLEGQQSERTPNNRPDAPK 548

Query: 182 -----------------QSDSDHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEE 241
                            QS S   L V  ++    +E  E   Q ++I +AFAGD+V  +
Sbjct: 549 EKKEKEQLINLQNFLTTQSPSVRSLAVPTIIEELEDE--EERDQRQMIKEAFAGDDVIRD 608

Query: 242 FERQKEEILNEENPEPEKPVLLPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLK--- 301
           F ++K E +    P+ +  + LPGWG+W  V  K   PS        A K+RQ ++K   
Sbjct: 609 FLKEKREAVEASKPK-DVDLTLPGWGEWGGVGLK---PS--------AKKRRQFLIKAPE 668

Query: 302 --NRKDANLKHVIISEKLDKKAEKLYTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGA 360
              RKD NL +VIISEK +  A     + LP+P+T    FE++I+ PIG  +N   A   
Sbjct: 669 GPPRKDKNLPNVIISEKRNIHAAAHQVQVLPYPFTHHRQFERTIQTPIGSTWNTQRAFQK 728

[Close]

BLAST of Carg12099-RA vs. Swiss-Prot
Match: sp|Q640M1|UT14A_MOUSE (U3 small nucleolar RNA-associated protein 14 homolog A OS=Mus musculus OX=10090 GN=Utp14a PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.8e-17
Identity = 80/276 (28.99%), Postives = 133/276 (48.19%), Query Frame = 0


Query: 105 SKRHHSSVFKSFDET-VRDPGPKTTYEVAIFASDTWKKAKNL--VKKVDSASTATASKPA 164
           SK+   S  K+ D     +P P+    + +   +  +  + L  + K DS       +P+
Sbjct: 472 SKKQKKSPAKAVDLVWEEEPAPEEDEPLLLQRPERMRTLEELEELGKEDSLPNKERPRPS 531

Query: 165 LQG-QVPKETVQDVDDQSDSDHELMVEGVLSSANNEAYELP--------------SQAEL 224
           ++G QV +        ++  +  + ++ +L++       L                Q ++
Sbjct: 532 VEGEQVRRNPQNHSKGKNKKEQMISLQNLLTTRTPSVTSLALPTTVEELEDEGARDQKQM 591

Query: 225 IHQAFAGDNVEEEFERQKEEILNEENPEPEKPVLLPGWGQWTNVQKKKGLPSWMLEEHDR 284
           I +AFAGD+V +EF ++K E +    P+    + LPGWG+W  +  K   PS        
Sbjct: 592 IKEAFAGDDVIKEFLKEKREAIQANKPK-AVDLTLPGWGEWGGMNLK---PS-------- 651

Query: 285 ANKKRQEVLK-----NRKDANLKHVIISEKLDKKAEKLYTKTLPFPYTAKEVFEQSIRMP 344
           A K+R+ ++K      RKD NL +VIISEK +  A     + LP+P+T  + FE++I+ P
Sbjct: 652 ARKRRRFLIKAPEGPPRKDKNLPNVIISEKRNIHAAAHQVRVLPYPFTHHQQFERTIQNP 711

Query: 345 IGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVD 358
           IG  +N   A   L  P+VV K G IIKPI  ++VD
Sbjct: 712 IGSTWNTQRAFQKLTAPKVVTKPGHIIKPITAEDVD 735

[Close]

BLAST of Carg12099-RA vs. Swiss-Prot
Match: sp|Q9BVJ6|UT14A_HUMAN (U3 small nucleolar RNA-associated protein 14 homolog A OS=Homo sapiens OX=9606 GN=UTP14A PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.4e-16
Identity = 68/225 (30.22%), Postives = 114/225 (50.67%), Query Frame = 0


Query: 137 DTWKKAKNLVKKVDSASTATASKPALQGQVPKETVQDVDDQSDSDHELMVEGVLSSANNE 196
           D  K+ K   + +D  +  T   P+++  +   T+++++D+ + +H              
Sbjct: 547 DAPKEKKKKEQMIDLQNLLTTQSPSVK-SLAVPTIEELEDEEERNHR------------- 606

Query: 197 AYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPVLLPGWGQWTNVQKKKGL 256
                   ++I +AFAGD+V  +F ++K E +    P+ +  + LPGWG+W  V  K   
Sbjct: 607 --------QMIKEAFAGDDVIRDFLKEKREAVEASKPK-DVDLTLPGWGEWGGVGLK--- 666

Query: 257 PSWMLEEHDRANKKRQEVLK-----NRKDANLKHVIISEKLDKKAEKLYTKTLPFPYTAK 316
           PS        A K+R+ ++K      RKD NL +VII+EK +  A     + LP+P+T  
Sbjct: 667 PS--------AKKRRRFLIKAPEGPPRKDKNLPNVIINEKRNIHAAAHQVRVLPYPFTHH 726

Query: 317 EVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEV 357
             FE++I+ PIG  +N   A   L  P+VV K G II PI+ ++V
Sbjct: 727 WQFERTIQTPIGSTWNTQRAFQKLTTPKVVTKPGHIINPIKAEDV 737

[Close]

BLAST of Carg12099-RA vs. TrEMBL
Match: tr|A0A1S3BSV8|A0A1S3BSV8_CUCME (U3 small nucleolar RNA-associated protein 14 homolog A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492806 PE=4 SV=1)

HSP 1 Score: 594.3 bits (1531), Expect = 1.9e-166
Identity = 328/392 (83.67%), Postives = 351/392 (89.54%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGGIKKSAPEPRKKTK 60
           MKKREEAAAEEAK+AIQEFESLSKQLNNSETENI TET SGRRTFG +KKSAPEPRKKTK
Sbjct: 511 MKKREEAAAEEAKIAIQEFESLSKQLNNSETENIDTETNSGRRTFGSMKKSAPEPRKKTK 570

Query: 61  PEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDETV 120
            EYYGDTDDEDDTE RE VE  GD+  SSL  D NI SDIL  DSK H +SVFKSFDETV
Sbjct: 571 SEYYGDTDDEDDTEAREAVEYDGDNNKSSLFADANIDSDILCEDSKTHQNSVFKSFDETV 630

Query: 121 RDPGPKTTYEVAIFASDTWKKAKNLVKKVDS-ASTATASKPALQGQVPKETVQDVDDQSD 180
           RDPGPKTT+EVAIFAS TWKKAK+L K+VDS  ST  +SKP LQGQV KET+QDVDDQSD
Sbjct: 631 RDPGPKTTHEVAIFASGTWKKAKDLEKRVDSKPSTIVSSKPELQGQVTKETMQDVDDQSD 690

Query: 181 SDHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPV 240
           SD ELMV+GVLSSANNE+YELPSQ++LI QAFAGD+VEEEFE+QKEEILNEENPEPEKPV
Sbjct: 691 SDQELMVDGVLSSANNESYELPSQSDLIRQAFAGDDVEEEFEKQKEEILNEENPEPEKPV 750

Query: 241 LLPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEKL 300
           LLPGWGQWT+VQKKKGLPSWML+EH+ ANKKRQE LKNRKDANLKHVIISEK+DKKAEKL
Sbjct: 751 LLPGWGQWTHVQKKKGLPSWMLKEHELANKKRQEALKNRKDANLKHVIISEKVDKKAEKL 810

Query: 301 YTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVDTQ 360
           YTKTLPFPYT K+VFE SIRMPIGPDFNPTSA+GALNRPEVVKKSGVIIKPIEF+EVDT 
Sbjct: 811 YTKTLPFPYTEKDVFEHSIRMPIGPDFNPTSAVGALNRPEVVKKSGVIIKPIEFEEVDTH 870

Query: 361 RKVEEHKQSGQXXXXXXXXXXNGKSVKKMKAG 392
           +KVEEHKQ   XXXXXXXXXX   S KKMK G
Sbjct: 871 QKVEEHKQXXXXXXXXXXXXXXXXSAKKMKKG 902

[Close]

BLAST of Carg12099-RA vs. TrEMBL
Match: tr|A0A1S3BSJ8|A0A1S3BSJ8_CUCME (U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492806 PE=4 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 6.2e-165
Identity = 328/394 (83.25%), Postives = 351/394 (89.09%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGGIKKSAPEPRKKTK 60
           MKKREEAAAEEAK+AIQEFESLSKQLNNSETENI TET SGRRTFG +KKSAPEPRKKTK
Sbjct: 511 MKKREEAAAEEAKIAIQEFESLSKQLNNSETENIDTETNSGRRTFGSMKKSAPEPRKKTK 570

Query: 61  PEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDETV 120
            EYYGDTDDEDDTE RE VE  GD+  SSL  D NI SDIL  DSK H +SVFKSFDETV
Sbjct: 571 SEYYGDTDDEDDTEAREAVEYDGDNNKSSLFADANIDSDILCEDSKTHQNSVFKSFDETV 630

Query: 121 RDPGPKTTYEVAIFASDTWK--KAKNLVKKVDS-ASTATASKPALQGQVPKETVQDVDDQ 180
           RDPGPKTT+EVAIFAS TWK  KAK+L K+VDS  ST  +SKP LQGQV KET+QDVDDQ
Sbjct: 631 RDPGPKTTHEVAIFASGTWKKVKAKDLEKRVDSKPSTIVSSKPELQGQVTKETMQDVDDQ 690

Query: 181 SDSDHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEK 240
           SDSD ELMV+GVLSSANNE+YELPSQ++LI QAFAGD+VEEEFE+QKEEILNEENPEPEK
Sbjct: 691 SDSDQELMVDGVLSSANNESYELPSQSDLIRQAFAGDDVEEEFEKQKEEILNEENPEPEK 750

Query: 241 PVLLPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAE 300
           PVLLPGWGQWT+VQKKKGLPSWML+EH+ ANKKRQE LKNRKDANLKHVIISEK+DKKAE
Sbjct: 751 PVLLPGWGQWTHVQKKKGLPSWMLKEHELANKKRQEALKNRKDANLKHVIISEKVDKKAE 810

Query: 301 KLYTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVD 360
           KLYTKTLPFPYT K+VFE SIRMPIGPDFNPTSA+GALNRPEVVKKSGVIIKPIEF+EVD
Sbjct: 811 KLYTKTLPFPYTEKDVFEHSIRMPIGPDFNPTSAVGALNRPEVVKKSGVIIKPIEFEEVD 870

Query: 361 TQRKVEEHKQSGQXXXXXXXXXXNGKSVKKMKAG 392
           T +KVEEHKQ   XXXXXXXXXX   S KKMK G
Sbjct: 871 THQKVEEHKQXXXXXXXXXXXXXXXXSAKKMKKG 904

[Close]

BLAST of Carg12099-RA vs. TrEMBL
Match: tr|A0A0A0K5G1|A0A0A0K5G1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G397580 PE=4 SV=1)

HSP 1 Score: 580.9 bits (1496), Expect = 2.2e-162
Identity = 323/390 (82.82%), Postives = 345/390 (88.46%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNNSETENIKTETTSGRRTFGGIKKSAPEPRKKTK 60
           MKKREEAAAEEAKLAIQEFESLSKQLNNSE EN+ TETT+GRRTFG +KKSAPEPRKKTK
Sbjct: 511 MKKREEAAAEEAKLAIQEFESLSKQLNNSEIENMDTETTNGRRTFGSMKKSAPEPRKKTK 570

Query: 61  PEYYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDETV 120
            EYY DT+DEDDT+  E V   GD+  SSL  D NI SDIL  DSK H +SVFKSFDETV
Sbjct: 571 SEYYDDTEDEDDTQAGEAVGYDGDNNKSSLFADANIDSDILCEDSKTHQNSVFKSFDETV 630

Query: 121 RDPGPKTTYEVAIFASDTWKKAKNLVKKVDS-ASTATASKPALQGQVPKETVQDVDDQSD 180
           RDPGPKTTYEVAIFAS TWKKAK+L K+VDS  S   +SK   QGQV KET+QDVDDQSD
Sbjct: 631 RDPGPKTTYEVAIFASGTWKKAKDLEKRVDSKPSPIVSSKLEFQGQVTKETMQDVDDQSD 690

Query: 181 SDHELMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEKPV 240
           SD ELMV+GVLSSANNE+YELPSQ++LI QAFAGD+VEEEFERQKEEILNEENPEPEKPV
Sbjct: 691 SDQELMVDGVLSSANNESYELPSQSDLIRQAFAGDDVEEEFERQKEEILNEENPEPEKPV 750

Query: 241 LLPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAEKL 300
           LLPGWGQWT+VQKKKGLPSWML+EH+ ANKKRQE LKNRKDANLKHVIISEKLDKKAEKL
Sbjct: 751 LLPGWGQWTHVQKKKGLPSWMLKEHELANKKRQEALKNRKDANLKHVIISEKLDKKAEKL 810

Query: 301 YTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVDTQ 360
           YTKTLPFPYT K+VFE SIRMPIGPDFNPTS IGALNRPEVVKKSGVIIKPIEF+EVD  
Sbjct: 811 YTKTLPFPYTEKDVFEHSIRMPIGPDFNPTSVIGALNRPEVVKKSGVIIKPIEFEEVDPH 870

Query: 361 RKVEEHKQSGQXXXXXXXXXXNGKSVKKMK 390
           +KVEEHKQ G XXXXXXXXXX GKS KKMK
Sbjct: 871 QKVEEHKQKGXXXXXXXXXXXXGKSAKKMK 900

[Close]

BLAST of Carg12099-RA vs. TrEMBL
Match: tr|A0A2P4J3F0|A0A2P4J3F0_QUESU (Uncharacterized protein c57a7.06 OS=Quercus suber OX=58331 GN=CFP56_19031 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 7.0e-108
Identity = 227/392 (57.91%), Postives = 283/392 (72.19%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNN-SETENIKTETTSGRRTFGGIKKSAPEPRKKT 60
           +KKR+EAA EEAKLA+QE+E   KQL++ S  EN K + +SGRR FG  K  APE R   
Sbjct: 522 LKKRKEAAEEEAKLALQEYEVSMKQLDDPSGAENSKIKASSGRRVFGAAKICAPESRDVI 581

Query: 61  KPE-YYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFDE 120
           K + +Y ++D +DD E +E + D G D +S +  D ++ S +    ++ H  SVFKSFD+
Sbjct: 582 KTDNFYANSDSDDDMEAKENIFDVGKDGSSDMQKDVHVDSVL---PNEFHQDSVFKSFDD 641

Query: 121 TVRDPGPKTTYEVAIFASDTWKKAKNLVKKVDSASTATASKPALQGQVPKETVQDVDDQS 180
            VRDPGPKTTY+VAIFASD W+K ++  K   ++  +  +      Q  +E V++V + S
Sbjct: 642 IVRDPGPKTTYDVAIFASDKWRKMESRNKVDANSKKSPVAVEPEYNQDLQEPVKEVGENS 701

Query: 181 DSDHE-LMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPEK 240
           D++ E  MV+G++S      YELPSQ ELI QAFAGD+VEE+FE  K+EILNEENPEPEK
Sbjct: 702 DTESEGQMVDGIISLDPKPTYELPSQTELIRQAFAGDDVEEDFENDKQEILNEENPEPEK 761

Query: 241 PVLLPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKAE 300
           PVLLPGWGQWT VQKKKGLPSWML+EH+ A +KR+E LK RKDA+LKHVIISEKLDKKAE
Sbjct: 762 PVLLPGWGQWTRVQKKKGLPSWMLKEHENAKRKREEALKKRKDAHLKHVIISEKLDKKAE 821

Query: 301 KLYTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEVD 360
           KL TKTLP+P+T+KEVFEQSIRMPIGP+FNP +A+GALNRP VVKK GVIIKPIEFKEV+
Sbjct: 822 KLLTKTLPYPFTSKEVFEQSIRMPIGPEFNPATAVGALNRPAVVKKPGVIIKPIEFKEVN 881

Query: 361 TQRKVEEHKQSGQXXXXXXXXXXNGKSVKKMK 390
                E+HK SGQ               KKMK
Sbjct: 882 PHENKEDHKWSGQKQKMKKSKSDGSIPRKKMK 910

[Close]

BLAST of Carg12099-RA vs. TrEMBL
Match: tr|A0A2I4E725|A0A2I4E725_9ROSI (U3 small nucleolar RNA-associated protein 14 OS=Juglans regia OX=51240 GN=LOC108986870 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 4.5e-107
Identity = 227/393 (57.76%), Postives = 280/393 (71.25%), Query Frame = 0


Query: 1   MKKREEAAAEEAKLAIQEFESLSKQLNNSE-TENIKTETTSGRRTFGGIKKS-APEPRKK 60
           +KKR+EAA EEAKLA+QE+ES  KQ+ +S   EN K  T+SGRR FG   K+ APE R  
Sbjct: 525 LKKRKEAADEEAKLALQEYESSLKQMEDSSGVENPKASTSSGRRIFGAAAKTHAPESRNM 584

Query: 61  TKPE-YYGDTDDEDDTETREGVEDAGDDKNSSLIVDENIGSDILGADSKRHHSSVFKSFD 120
            K + +Y ++D EDD E +E   D G++K++    D ++ S +   +++    SVFKSFD
Sbjct: 585 VKSDTFYANSDSEDDMEAKENTADVGNNKSNDSQKDVHLDSVLPHENTEIVQDSVFKSFD 644

Query: 121 ETVRDPGPKTTYEVAIFASDTWKKAKNLVKKVDSASTATASKPALQGQVPKETVQDVDDQ 180
           + VRDPGPKTTYEVAIFASD W+K ++  K    +  +  S      Q  +E V++V D 
Sbjct: 645 DIVRDPGPKTTYEVAIFASDRWRKMESRDKMDAKSKRSLKSVGREHNQDSEEPVKEVGDH 704

Query: 181 SDSDHE-LMVEGVLSSANNEAYELPSQAELIHQAFAGDNVEEEFERQKEEILNEENPEPE 240
           SDS+ E  MV+GVL+     +YELPSQAELI QAFAGD+VEE+FE  K E+LN+ENPEPE
Sbjct: 705 SDSESEGQMVDGVLALGPKPSYELPSQAELIRQAFAGDDVEEDFENAKLEVLNKENPEPE 764

Query: 241 KPVLLPGWGQWTNVQKKKGLPSWMLEEHDRANKKRQEVLKNRKDANLKHVIISEKLDKKA 300
           KPVLLPGWGQWT+VQKKKGLPSWML +H+ A +KR+E LK RKDA LKHVIISEKLD KA
Sbjct: 765 KPVLLPGWGQWTHVQKKKGLPSWMLNDHENAQRKREEALKKRKDARLKHVIISEKLDVKA 824

Query: 301 EKLYTKTLPFPYTAKEVFEQSIRMPIGPDFNPTSAIGALNRPEVVKKSGVIIKPIEFKEV 360
           +KL TKTLP+P+T+KEVFEQSIRMPIGP+FNP   +GALNRPEVVKK GVII+PIEFKEV
Sbjct: 825 QKLLTKTLPYPFTSKEVFEQSIRMPIGPEFNPAMTVGALNRPEVVKKPGVIIRPIEFKEV 884

Query: 361 DTQRKVEEHKQSGQXXXXXXXXXXNGKSVKKMK 390
           +     E HK SGQ            K  KK K
Sbjct: 885 NPHENTEGHKWSGQKQKMKKGKSNGTKMTKKTK 917

The following BLAST results are available for this feature:

BLAST of Carg12099-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514378.1	6.6e-203	98.47	U3 small nucleolar RNA-associated protein 14 homolog A [Cucurbita pepo subsp. pe...	[more]
XP_022960057.1	2.8e-201	96.43	U3 small nucleolar RNA-associated protein 14 homolog A [Cucurbita moschata]	[more]
XP_023004450.1	1.8e-200	97.70	U3 small nucleolar RNA-associated protein 14 homolog A [Cucurbita maxima]	[more]
XP_022149059.1	2.6e-167	82.53	U3 small nucleolar RNA-associated protein 14 homolog A [Momordica charantia]	[more]
XP_008451562.1	2.9e-166	83.67	PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A isoform X2 [Cu...	[more]

BLAST of Carg12099-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02400.1	7.3e-79	47.68	U3 ribonucleoprotein (Utp) family protein	[more]
AT5G08600.2	2.8e-70	43.54	U3 ribonucleoprotein (Utp) family protein	[more]

BLAST of Carg12099-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P87137\|YDM6_SCHPO	1.1e-18	29.46	Uncharacterized protein C57A7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
sp\|Q3T0Q8\|UT14A_BOVIN	5.3e-18	31.08	U3 small nucleolar RNA-associated protein 14 homolog A OS=Bos taurus OX=9913 GN=...	[more]
sp\|Q5TAP6\|UT14C_HUMAN	5.3e-18	31.32	U3 small nucleolar RNA-associated protein 14 homolog C OS=Homo sapiens OX=9606 G...	[more]
sp\|Q640M1\|UT14A_MOUSE	5.8e-17	28.99	U3 small nucleolar RNA-associated protein 14 homolog A OS=Mus musculus OX=10090 ...	[more]
sp\|Q9BVJ6\|UT14A_HUMAN	8.4e-16	30.22	U3 small nucleolar RNA-associated protein 14 homolog A OS=Homo sapiens OX=9606 G...	[more]

BLAST of Carg12099-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BSV8\|A0A1S3BSV8_CUCME	1.9e-166	83.67	U3 small nucleolar RNA-associated protein 14 homolog A isoform X2 OS=Cucumis mel...	[more]
tr\|A0A1S3BSJ8\|A0A1S3BSJ8_CUCME	6.2e-165	83.25	U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 OS=Cucumis mel...	[more]
tr\|A0A0A0K5G1\|A0A0A0K5G1_CUCSA	2.2e-162	82.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G397580 PE=4 SV=1	[more]
tr\|A0A2P4J3F0\|A0A2P4J3F0_QUESU	7.0e-108	57.91	Uncharacterized protein c57a7.06 OS=Quercus suber OX=58331 GN=CFP56_19031 PE=4 S...	[more]
tr\|A0A2I4E725\|A0A2I4E725_9ROSI	4.5e-107	57.76	U3 small nucleolar RNA-associated protein 14 OS=Juglans regia OX=51240 GN=LOC108...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0032040	small-subunit processome

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR006709	SSU_processome_Utp14

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12099	Carg12099	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12099-RA	Carg12099-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12099-RA.exon.1	Carg12099-RA.exon.1	exon
Carg12099-RA.exon.2	Carg12099-RA.exon.2	exon
Carg12099-RA.exon.3	Carg12099-RA.exon.3	exon
Carg12099-RA.exon.4	Carg12099-RA.exon.4	exon
Carg12099-RA.exon.5	Carg12099-RA.exon.5	exon
Carg12099-RA.exon.6	Carg12099-RA.exon.6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12099-RA.CDS.1	Carg12099-RA.CDS.1	CDS
Carg12099-RA.CDS.2	Carg12099-RA.CDS.2	CDS
Carg12099-RA.CDS.3	Carg12099-RA.CDS.3	CDS
Carg12099-RA.CDS.4	Carg12099-RA.CDS.4	CDS
Carg12099-RA.CDS.5	Carg12099-RA.CDS.5	CDS
Carg12099-RA.CDS.6	Carg12099-RA.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12099-RA.three_prime_UTR.1	Carg12099-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..32
None	No IPR available	COILS	Coil	Coil	coord: 264..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 357..392
None	No IPR available	PANTHER	PTHR14150:SF12	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 HOMOLOG A-RELATED	coord: 1..375
IPR006709	Small-subunit processome, Utp14	PFAM	PF04615	Utp14	coord: 1..353 e-value: 1.4E-67 score: 228.9
IPR006709	Small-subunit processome, Utp14	PANTHER	PTHR14150	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14	coord: 1..375