Carg12084 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTTCTTCATCAACAACCATCCCGATCTCTCTGGCTCGACCTTCAATCCATCGTCTTTAATGGCGATTTCGAACCAGGGTCTACTCTGTATCGAGCCGCAGAAACAGAGGACCTGTCACCACTGTCGCACCACCAGAACCCCCCTCTGGAGAGCCGGTCCTGCCGGCCCAAGGGTAACCACTTAAACAATGGTGTGATTCATTCATCATTTAATTTCAATAATCTTTTGATTTTGATCGATTTCTGGGATTTTGTTCTCGACAGTCGCTGTGCAATGCGTGTGGGATTAGATACAGGAAGCTGAAGAACAGTAATGGCGGAGTGAATAAGAGTGTTAATGGGAAGAAAGTGGTGAGAGTGGTTGGTTTGGGGAGAGAGATAATGCTGCATAGAGCGACGGCGGCGATGGCGGAAAATGGAGGTGCAGAGACGATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCATGGCTCTATCTTCCGGCTATGTATCATAA ATGGCCTTCTTCATCAACAACCATCCCGATCTCTCTGGCTCGACCTTCAATCCATCGTCTTTAATGGCGATTTCGAACCAGGGTCTACTCTGTATCGAGCCGCAGAAACAGAGGACCTGTCACCACTGTCGCACCACCAGAACCCCCCTCTGGAGAGCCGGTCCTGCCGGCCCAAGGTCGCTGTGCAATGCGTGTGGGATTAGATACAGGAAGCTGAAGAACAGTAATGGCGGAGTGAATAAGAGTGTTAATGGGAAGAAAGTGGTGAGAGTGGTTGGTTTGGGGAGAGAGATAATGCTGCATAGAGCGACGGCGGCGATGGCGGAAAATGGAGGTGCAGAGACGATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCATGGCTCTATCTTCCGGCTATGTATCATAA ATGGCCTTCTTCATCAACAACCATCCCGATCTCTCTGGCTCGACCTTCAATCCATCGTCTTTAATGGCGATTTCGAACCAGGGTCTACTCTGTATCGAGCCGCAGAAACAGAGGACCTGTCACCACTGTCGCACCACCAGAACCCCCCTCTGGAGAGCCGGTCCTGCCGGCCCAAGGTCGCTGTGCAATGCGTGTGGGATTAGATACAGGAAGCTGAAGAACAGTAATGGCGGAGTGAATAAGAGTGTTAATGGGAAGAAAGTGGTGAGAGTGGTTGGTTTGGGGAGAGAGATAATGCTGCATAGAGCGACGGCGGCGATGGCGGAAAATGGAGGTGCAGAGACGATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCATGGCTCTATCTTCCGGCTATGTATCATAA MAFFINNHPDLSGSTFNPSSLMAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS
BLAST of Carg12084 vs. NCBI nr
Match: XP_022959984.1 (GATA transcription factor 15-like [Cucurbita moschata]) HSP 1 Score: 275.0 bits (702), Expect = 1.4e-70 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Carg12084 vs. NCBI nr
Match: XP_023515141.1 (GATA transcription factor 15-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 267.7 bits (683), Expect = 2.2e-68 Identity = 133/136 (97.79%), Postives = 133/136 (97.79%), Query Frame = 0
BLAST of Carg12084 vs. NCBI nr
Match: XP_023004687.1 (GATA transcription factor 15-like [Cucurbita maxima]) HSP 1 Score: 257.3 bits (656), Expect = 2.9e-65 Identity = 127/136 (93.38%), Postives = 128/136 (94.12%), Query Frame = 0
BLAST of Carg12084 vs. NCBI nr
Match: XP_011659382.1 (PREDICTED: GATA transcription factor 15-like [Cucumis sativus] >KGN44993.1 hypothetical protein Csa_7G405980 [Cucumis sativus]) HSP 1 Score: 156.0 bits (393), Expect = 9.2e-35 Identity = 90/153 (58.82%), Postives = 101/153 (66.01%), Query Frame = 0
BLAST of Carg12084 vs. NCBI nr
Match: XP_022152091.1 (GATA transcription factor 16-like [Momordica charantia]) HSP 1 Score: 154.1 bits (388), Expect = 3.5e-34 Identity = 88/136 (64.71%), Postives = 99/136 (72.79%), Query Frame = 0
BLAST of Carg12084 vs. TAIR10
Match: AT3G06740.1 (GATA transcription factor 15) HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16 Identity = 56/125 (44.80%), Postives = 71/125 (56.80%), Query Frame = 0
BLAST of Carg12084 vs. TAIR10
Match: AT5G26930.1 (GATA transcription factor 23) HSP 1 Score: 66.2 bits (160), Expect = 1.7e-11 Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 0
BLAST of Carg12084 vs. TAIR10
Match: AT4G26150.1 (cytokinin-responsive gata factor 1) HSP 1 Score: 63.9 bits (154), Expect = 8.6e-11 Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0
BLAST of Carg12084 vs. TAIR10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein) HSP 1 Score: 63.9 bits (154), Expect = 8.6e-11 Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 0
BLAST of Carg12084 vs. TAIR10
Match: AT3G16870.1 (GATA transcription factor 17) HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10 Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of Carg12084 vs. Swiss-Prot
Match: sp|Q8LG10|GAT15_ARATH (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2) HSP 1 Score: 83.6 bits (205), Expect = 1.9e-15 Identity = 56/125 (44.80%), Postives = 71/125 (56.80%), Query Frame = 0
BLAST of Carg12084 vs. Swiss-Prot
Match: sp|Q8LC59|GAT23_ARATH (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2) HSP 1 Score: 66.2 bits (160), Expect = 3.1e-10 Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 0
BLAST of Carg12084 vs. Swiss-Prot
Match: sp|Q6YW48|CGA1_ORYSJ (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09 Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0
BLAST of Carg12084 vs. Swiss-Prot
Match: sp|Q9SZI6|GAT22_ARATH (Putative GATA transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=GATA22 PE=1 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09 Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0
BLAST of Carg12084 vs. Swiss-Prot
Match: sp|Q9LIB5|GAT17_ARATH (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.0e-09 Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of Carg12084 vs. TrEMBL
Match: tr|A0A0A0K6B1|A0A0A0K6B1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405980 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 6.1e-35 Identity = 90/153 (58.82%), Postives = 101/153 (66.01%), Query Frame = 0
BLAST of Carg12084 vs. TrEMBL
Match: tr|A0A1S3BSR7|A0A1S3BSR7_CUCME (GATA transcription factor 15-like OS=Cucumis melo OX=3656 GN=LOC103492777 PE=4 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32 Identity = 87/158 (55.06%), Postives = 95/158 (60.13%), Query Frame = 0
BLAST of Carg12084 vs. TrEMBL
Match: tr|A0A067K6I5|A0A067K6I5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18955 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 4.8e-16 Identity = 58/142 (40.85%), Postives = 83/142 (58.45%), Query Frame = 0
BLAST of Carg12084 vs. TrEMBL
Match: tr|C6T5X2|C6T5X2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100527933 PE=2 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 8.2e-16 Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 0
BLAST of Carg12084 vs. TrEMBL
Match: tr|A0A1U8AK57|A0A1U8AK57_NELNU (GATA transcription factor 16-like OS=Nelumbo nucifera OX=4432 GN=LOC104605140 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15 Identity = 54/118 (45.76%), Postives = 71/118 (60.17%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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