Carg19973 (gene) Silver-seed gourd

NameCarg19973
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein SSUH2 homolog
LocationCucurbita_argyrosperma_scaffold_167 : 161311 .. 161963 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGACGTCAAACATGAATATCCAGCTGTAAGTGACCAAACAAAAAAAATGAAAGTTTATCAAATTATCAAGATCAAGCGTTCCTCCCTACCATCACCAAACCTGATCGACATTCTTTCGCACGAAGGACACACGACGGCTTTTATTACGCTAATTCTTCCACCCCCAAATTGGCTCACGAAGATACGGACATGGAGGATCTTTGTTTTCAGTACACTCCTTATCTTTCTTGGGATTATACAACTTTCTAGGAGTTCCCAATTGATTTCGCTGAGCATACTTTTGTTGTGGTTTCTCCCTTTCTATTTTCACCATAGATTCGGAAAGACATCGAAAGCGAATTGGGAGATCAATCGCCATAATCAGTACTTAGAGAAGAACAGGCTGCAACACCCTCCGATTATTGCCAGAACCCTAGTTAGCGTCGAGGAAATTCGATCGGCGCCCAACGTTTCTGATTACTACCCGCCTTCTCTTCATGGCGCATTGGTTAGTTCGCCGGAGCCTGATCCTAGAGGTACGCATATTTACGAGAACTCATACATGGGTTTATCAATAGTGGTTGTCACGGATAAGCTTGGTTATATACTACTTATGCCTAATTTTCCATTTATTGCTGGTTGCAAGCCTCTTTCTAATCTTCCTTGA

mRNA sequence

ATGAAGAAGACGTCAAACATGAATATCCAGCTATTCGGAAAGACATCGAAAGCGAATTGGGAGATCAATCGCCATAATCAGTACTTAGAGAAGAACAGGCTGCAACACCCTCCGATTATTGCCAGAACCCTAGTTAGCGTCGAGGAAATTCGATCGGCGCCCAACGTTTCTGATTACTACCCGCCTTCTCTTCATGGCGCATTGGTTAGTTCGCCGGAGCCTGATCCTAGAGGTACGCATATTTACGAGAACTCATACATGGGTTTATCAATAGTGGTTGTCACGGATAAGCTTGGTTATATACTACTTATGCCTAATTTTCCATTTATTGCTGGTTGCAAGCCTCTTTCTAATCTTCCTTGA

Coding sequence (CDS)

ATGAAGAAGACGTCAAACATGAATATCCAGCTATTCGGAAAGACATCGAAAGCGAATTGGGAGATCAATCGCCATAATCAGTACTTAGAGAAGAACAGGCTGCAACACCCTCCGATTATTGCCAGAACCCTAGTTAGCGTCGAGGAAATTCGATCGGCGCCCAACGTTTCTGATTACTACCCGCCTTCTCTTCATGGCGCATTGGTTAGTTCGCCGGAGCCTGATCCTAGAGGTACGCATATTTACGAGAACTCATACATGGGTTTATCAATAGTGGTTGTCACGGATAAGCTTGGTTATATACTACTTATGCCTAATTTTCCATTTATTGCTGGTTGCAAGCCTCTTTCTAATCTTCCTTGA

Protein sequence

MKKTSNMNIQLFGKTSKANWEINRHNQYLEKNRLQHPPIIARTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPRGTHIYENSYMGLSIVVVTDKLGYILLMPNFPFIAGCKPLSNLP
BLAST of Carg19973 vs. NCBI nr
Match: XP_022950703.1 (protein SSUH2 homolog [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 6.7e-13
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 25 HNQYLEKNRLQHP-PIIARTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPRGTHI-Y 84
          H QYL++    +P    A TLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPR   + Y
Sbjct: 19 HYQYLKRTGSANPSDSFAGTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPRDQALSY 78

Query: 85 ENSYMG 89
          +  Y G
Sbjct: 79 QGGYAG 84

BLAST of Carg19973 vs. NCBI nr
Match: XP_023544518.1 (protein SSUH2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 6.7e-13
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 25 HNQYLEKNRLQHP-PIIARTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPRGTHI-Y 84
          H QYL++    +P    A TLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPR   + Y
Sbjct: 19 HYQYLKRTGSANPSDSFAGTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPRDQALSY 78

Query: 85 ENSYMG 89
          +  Y G
Sbjct: 79 QGGYAG 84

BLAST of Carg19973 vs. NCBI nr
Match: XP_022978193.1 (protein SSUH2 homolog [Cucurbita maxima])

HSP 1 Score: 82.8 bits (203), Expect = 8.7e-13
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 25 HNQYLEKNRLQHP-PIIARTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPRGTHI-Y 84
          H QYL +    +P    A TLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPR   + Y
Sbjct: 19 HYQYLRRTGSANPSDSFAGTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPRDQALSY 78

Query: 85 ENSYMG 89
          +  Y G
Sbjct: 79 QGGYAG 84

BLAST of Carg19973 vs. NCBI nr
Match: XP_008448954.1 (PREDICTED: protein SSUH2 homolog [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 42/66 (63.64%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 25 HNQYLEKNRLQHP-PIIARTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPRGTHI-Y 84
          H QYL      +P    A T VSVEEIRSAPNVS YYPPSLHGALVSSPEPDPR   + Y
Sbjct: 23 HYQYLRTTGSANPIDSFAGTQVSVEEIRSAPNVSHYYPPSLHGALVSSPEPDPRDQVLFY 82

Query: 85 ENSYMG 89
          +  Y G
Sbjct: 83 QGGYGG 88

BLAST of Carg19973 vs. NCBI nr
Match: XP_011653674.1 (PREDICTED: protein SSUH2 homolog isoform X1 [Cucumis sativus] >KGN54347.1 hypothetical protein Csa_4G307890 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-10
Identity = 41/66 (62.12%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 25 HNQYLEKNRLQHP-PIIARTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPRGTHI-Y 84
          H QYL      +P    A T VSVEEIRSAPNVS YYPPSLHGAL+SSPEPDPR   + Y
Sbjct: 23 HYQYLRTTGSANPIDSFAGTQVSVEEIRSAPNVSHYYPPSLHGALLSSPEPDPRDQGLFY 82

Query: 85 ENSYMG 89
          +  Y G
Sbjct: 83 QGGYGG 88

BLAST of Carg19973 vs. TrEMBL
Match: tr|A0A1S3BKY0|A0A1S3BKY0_CUCME (protein SSUH2 homolog OS=Cucumis melo OX=3656 GN=LOC103490964 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.2e-11
Identity = 42/66 (63.64%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 25 HNQYLEKNRLQHP-PIIARTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPRGTHI-Y 84
          H QYL      +P    A T VSVEEIRSAPNVS YYPPSLHGALVSSPEPDPR   + Y
Sbjct: 23 HYQYLRTTGSANPIDSFAGTQVSVEEIRSAPNVSHYYPPSLHGALVSSPEPDPRDQVLFY 82

Query: 85 ENSYMG 89
          +  Y G
Sbjct: 83 QGGYGG 88

BLAST of Carg19973 vs. TrEMBL
Match: tr|A0A0A0L182|A0A0A0L182_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307890 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 41/66 (62.12%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 25 HNQYLEKNRLQHP-PIIARTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDPRGTHI-Y 84
          H QYL      +P    A T VSVEEIRSAPNVS YYPPSLHGAL+SSPEPDPR   + Y
Sbjct: 23 HYQYLRTTGSANPIDSFAGTQVSVEEIRSAPNVSHYYPPSLHGALLSSPEPDPRDQGLFY 82

Query: 85 ENSYMG 89
          +  Y G
Sbjct: 83 QGGYGG 88

BLAST of Carg19973 vs. TrEMBL
Match: tr|I1KK89|I1KK89_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100816518 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 40 IARTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDP-RGTHIYENSYMG 89
          +A T VSV+EIRSA   S YYPPSLHGALV SPEPDP     +Y+  Y G
Sbjct: 40 LAGTEVSVDEIRSAAAASGYYPPSLHGALVGSPEPDPTEQALVYQGGYGG 89

BLAST of Carg19973 vs. TrEMBL
Match: tr|A0A0B2RAS1|A0A0B2RAS1_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_040216 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 40 IARTLVSVEEIRSAPNVSDYYPPSLHGALVSSPEPDP-RGTHIYENSYMG 89
          +A T VSV+EIRSA   S YYPPSLHGALV SPEPDP     +Y+  Y G
Sbjct: 40 LAGTEVSVDEIRSAAAASGYYPPSLHGALVGSPEPDPTEQALVYQGGYGG 89

BLAST of Carg19973 vs. TrEMBL
Match: tr|A0A1D1Z712|A0A1D1Z712_9ARAE (Uncharacterized protein C3orf32 (Fragment) OS=Anthurium amnicola OX=1678845 GN=C3orf32 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 15 TSKANWEINRHNQYLEKNRLQHPPIIARTLVSVEEIRSAPNVSD-YYPPSLHGALVSSPE 74
          T +  W   R  QY+ +    H P ++   +SVEEIRSA + S+ +YPPS+H AL+SSPE
Sbjct: 19 TDQEKW---RSYQYVGRTGSMHVPPLSGADISVEEIRSASSFSESHYPPSIHAALISSPE 78

Query: 75 PDPRGTH--IYENSYMG 89
          PDP   H  ++   Y G
Sbjct: 79 PDPAHDHALVFHGGYGG 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022950703.16.7e-1366.67protein SSUH2 homolog [Cucurbita moschata][more]
XP_023544518.16.7e-1366.67protein SSUH2 homolog [Cucurbita pepo subsp. pepo][more]
XP_022978193.18.7e-1366.67protein SSUH2 homolog [Cucurbita maxima][more]
XP_008448954.11.4e-1063.64PREDICTED: protein SSUH2 homolog [Cucumis melo][more]
XP_011653674.12.4e-1062.12PREDICTED: protein SSUH2 homolog isoform X1 [Cucumis sativus] >KGN54347.1 hypoth... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BKY0|A0A1S3BKY0_CUCME9.2e-1163.64protein SSUH2 homolog OS=Cucumis melo OX=3656 GN=LOC103490964 PE=4 SV=1[more]
tr|A0A0A0L182|A0A0A0L182_CUCSA1.6e-1062.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307890 PE=4 SV=1[more]
tr|I1KK89|I1KK89_SOYBN1.8e-0662.00Uncharacterized protein OS=Glycine max OX=3847 GN=100816518 PE=4 SV=1[more]
tr|A0A0B2RAS1|A0A0B2RAS1_GLYSO1.8e-0662.00Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_040216 PE=4 SV=1[more]
tr|A0A1D1Z712|A0A1D1Z712_9ARAE2.3e-0642.86Uncharacterized protein C3orf32 (Fragment) OS=Anthurium amnicola OX=1678845 GN=C... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19973-RACarg19973-RAmRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg19973Cucurbita maxima (Rimu)carcmaB0776
Carg19973Silver-seed gourdcarcarB022
Carg19973Silver-seed gourdcarcarB098
Carg19973Silver-seed gourdcarcarB195
Carg19973Silver-seed gourdcarcarB301
Carg19973Silver-seed gourdcarcarB514
Carg19973Silver-seed gourdcarcarB517
Carg19973Cucumber (Gy14) v2carcgybB0560
Carg19973Cucumber (Gy14) v2carcgybB0561
Carg19973Cucumber (Gy14) v2carcgybB0562
Carg19973Cucumber (Gy14) v1carcgyB0632
Carg19973Cucumber (Gy14) v1carcgyB0634
Carg19973Cucumber (Gy14) v1carcgyB0635
Carg19973Cucurbita maxima (Rimu)carcmaB0777
Carg19973Cucurbita maxima (Rimu)carcmaB0773
Carg19973Cucurbita maxima (Rimu)carcmaB0774
Carg19973Cucurbita maxima (Rimu)carcmaB0775
Carg19973Cucurbita maxima (Rimu)carcmaB0778
Carg19973Cucurbita moschata (Rifu)carcmoB0751
Carg19973Cucurbita moschata (Rifu)carcmoB0752
Carg19973Cucurbita moschata (Rifu)carcmoB0753
Carg19973Cucurbita moschata (Rifu)carcmoB0754
Carg19973Cucurbita moschata (Rifu)carcmoB0755
Carg19973Cucurbita moschata (Rifu)carcmoB0756
Carg19973Cucurbita moschata (Rifu)carcmoB0757
Carg19973Cucurbita pepo (Zucchini)carcpeB0785
Carg19973Cucurbita pepo (Zucchini)carcpeB0786
Carg19973Cucurbita pepo (Zucchini)carcpeB0790
Carg19973Cucurbita pepo (Zucchini)carcpeB0791
Carg19973Cucurbita pepo (Zucchini)carcpeB0792
Carg19973Wild cucumber (PI 183967)carcpiB0591
Carg19973Wild cucumber (PI 183967)carcpiB0592
Carg19973Cucumber (Chinese Long) v2carcuB0584
Carg19973Cucumber (Chinese Long) v2carcuB0585
Carg19973Cucumber (Chinese Long) v2carcuB0586
Carg19973Cucumber (Chinese Long) v3carcucB0594
Carg19973Cucumber (Chinese Long) v3carcucB0591
Carg19973Cucumber (Chinese Long) v3carcucB0592
Carg19973Bottle gourd (USVL1VR-Ls)carlsiB503
Carg19973Bottle gourd (USVL1VR-Ls)carlsiB504
Carg19973Bottle gourd (USVL1VR-Ls)carlsiB505
Carg19973Melon (DHL92) v3.5.1carmeB0559
Carg19973Melon (DHL92) v3.5.1carmeB0560
Carg19973Melon (DHL92) v3.5.1carmeB0561
Carg19973Melon (DHL92) v3.6.1carmedB0565
Carg19973Melon (DHL92) v3.6.1carmedB0566
Carg19973Melon (DHL92) v3.6.1carmedB0567
Carg19973Watermelon (Charleston Gray)carwcgB0540
Carg19973Watermelon (Charleston Gray)carwcgB0541
Carg19973Watermelon (Charleston Gray)carwcgB0542
Carg19973Watermelon (Charleston Gray)carwcgB0543
Carg19973Watermelon (97103) v1carwmB0553
Carg19973Watermelon (97103) v1carwmB0554
Carg19973Watermelon (97103) v1carwmB0555
Carg19973Watermelon (97103) v2carwmbB0581
Carg19973Watermelon (97103) v2carwmbB0582
Carg19973Watermelon (97103) v2carwmbB0583
Carg19973Wax gourdcarwgoB0664
Carg19973Wax gourdcarwgoB0665
Carg19973Wax gourdcarwgoB0666