Carg23201-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23201-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger protein ZAT9
Location	Cucurbita_argyrosperma_scaffold_144 : 344827 .. 345585 (-)
Sequence length	759

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCCACATTTGCAACCTCTGTTTCAAATCCTTCGCCAATGGCAGAGCCTACGCCGCCCACATGAAGGCCCATCTCACTGCCGCCATGGCGCCACCACTCCCTCCGCCCACTCCTCCAGAGACCCACGGCGGTGTTCCCTCTTCCTTCTACTCCTACTCCGCTGACGACGATGAATTTCGAGAAGATCCCAAGAGAATTTTCAATATTCTCCTTCAAGACACAGAGAGCGAAACGGAATCCACAAACCCATCTCGGAAACGATCCAAAAAGTACCGGAAACCGCCGTTGGAACCGAGCAGCTCTGTTTCTGATACTTCACCGGAGGAAGACCTCGCCATGTCTCTGATGATGCTCTCACGCGATCGATGGATGAAACCAGAAACGAAATCATTGACGGGAATTAAAAGGAAGAAAAAGTGCGGAAAGTGCACGAAATTGTTCCGATCTTACAGAGCTCTATTTAGCCATGAAAAAATCTGCCAATTGGAAACAGAGCTCGACGAAGAACAGGAAGAACACGAAGAGTTCAAAAATGGCGGAAATAGAAGAGTCTTCAAATGCCCATTTTGTTTTAAGCTATTTGGATCAGGACAAGCCCTTGGCGGCCATAAGAGATCCCATGTTGTGAGCTCTGAAAACGCTGCTGTTACTGTAAATGCCTCTGTTTCTTTGAAGCTTGAAATTAGTCTGATAGATCTGAACTTACCGGCGCCGATTGAAGAAGATGATTACAGTGTAGTTTCGGATGCTTGA

mRNA sequence

ATGGAGTCCCACATTTGCAACCTCTGTTTCAAATCCTTCGCCAATGGCAGAGCCTACGCCGCCCACATGAAGGCCCATCTCACTGCCGCCATGGCGCCACCACTCCCTCCGCCCACTCCTCCAGAGACCCACGGCGGTGTTCCCTCTTCCTTCTACTCCTACTCCGCTGACGACGATGAATTTCGAGAAGATCCCAAGAGAATTTTCAATATTCTCCTTCAAGACACAGAGAGCGAAACGGAATCCACAAACCCATCTCGGAAACGATCCAAAAAGTACCGGAAACCGCCGTTGGAACCGAGCAGCTCTGTTTCTGATACTTCACCGGAGGAAGACCTCGCCATGTCTCTGATGATGCTCTCACGCGATCGATGGATGAAACCAGAAACGAAATCATTGACGGGAATTAAAAGGAAGAAAAAGTGCGGAAAGTGCACGAAATTGTTCCGATCTTACAGAGCTCTATTTAGCCATGAAAAAATCTGCCAATTGGAAACAGAGCTCGACGAAGAACAGGAAGAACACGAAGAGTTCAAAAATGGCGGAAATAGAAGAGTCTTCAAATGCCCATTTTGTTTTAAGCTATTTGGATCAGGACAAGCCCTTGGCGGCCATAAGAGATCCCATGTTGTGAGCTCTGAAAACGCTGCTGTTACTGTAAATGCCTCTGTTTCTTTGAAGCTTGAAATTAGTCTGATAGATCTGAACTTACCGGCGCCGATTGAAGAAGATGATTACAGTGTAGTTTCGGATGCTTGA

Coding sequence (CDS)

ATGGAGTCCCACATTTGCAACCTCTGTTTCAAATCCTTCGCCAATGGCAGAGCCTACGCCGCCCACATGAAGGCCCATCTCACTGCCGCCATGGCGCCACCACTCCCTCCGCCCACTCCTCCAGAGACCCACGGCGGTGTTCCCTCTTCCTTCTACTCCTACTCCGCTGACGACGATGAATTTCGAGAAGATCCCAAGAGAATTTTCAATATTCTCCTTCAAGACACAGAGAGCGAAACGGAATCCACAAACCCATCTCGGAAACGATCCAAAAAGTACCGGAAACCGCCGTTGGAACCGAGCAGCTCTGTTTCTGATACTTCACCGGAGGAAGACCTCGCCATGTCTCTGATGATGCTCTCACGCGATCGATGGATGAAACCAGAAACGAAATCATTGACGGGAATTAAAAGGAAGAAAAAGTGCGGAAAGTGCACGAAATTGTTCCGATCTTACAGAGCTCTATTTAGCCATGAAAAAATCTGCCAATTGGAAACAGAGCTCGACGAAGAACAGGAAGAACACGAAGAGTTCAAAAATGGCGGAAATAGAAGAGTCTTCAAATGCCCATTTTGTTTTAAGCTATTTGGATCAGGACAAGCCCTTGGCGGCCATAAGAGATCCCATGTTGTGAGCTCTGAAAACGCTGCTGTTACTGTAAATGCCTCTGTTTCTTTGAAGCTTGAAATTAGTCTGATAGATCTGAACTTACCGGCGCCGATTGAAGAAGATGATTACAGTGTAGTTTCGGATGCTTGA

Protein sequence

MESHICNLCFKSFANGRAYAAHMKAHLTAAMAPPLPPPTPPETHGGVPSSFYSYSADDDEFREDPKRIFNILLQDTESETESTNPSRKRSKKYRKPPLEPSSSVSDTSPEEDLAMSLMMLSRDRWMKPETKSLTGIKRKKKCGKCTKLFRSYRALFSHEKICQLETELDEEQEEHEEFKNGGNRRVFKCPFCFKLFGSGQALGGHKRSHVVSSENAAVTVNASVSLKLEISLIDLNLPAPIEEDDYSVVSDA

Homology

[Close]

BLAST of Carg23201-RA vs. NCBI nr
Match: XP_022922191.1 (zinc finger protein ZAT9-like [Cucurbita moschata])

HSP 1 Score: 363.6 bits (932), Expect = 5.4e-97
Identity = 249/252 (98.81%), Postives = 249/252 (98.81%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADDDE 60
           MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXX GGVPSSF SYSADDDE
Sbjct: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXXGGVPSSFSSYSADDDE 60

Query: 61  FREDPKRIFNILLQDTESETXXXXXXXXXXXXYRKPPLEPSSSVSDTSPEEDLAMSLMML 120
           FREDPKRIFNILLQDTESE XXXXXXXXXXXXYRKPPLEPSSSVSDTSPEEDLAMSLMML
Sbjct: 61  FREDPKRIFNILLQDTESEXXXXXXXXXXXXXYRKPPLEPSSSVSDTSPEEDLAMSLMML 120

Query: 121 SRDRWMKPETKSLTGIKRKKKCGKCTKLFRSYRALFSHEKICQLETELDEEQEEHEEFKN 180
           SRDRWMKPETKSLTGIKRKKKCGKCTKLFRSYRALFSHEKICQLETELDEEQEEHEEFKN
Sbjct: 121 SRDRWMKPETKSLTGIKRKKKCGKCTKLFRSYRALFSHEKICQLETELDEEQEEHEEFKN 180

Query: 181 GGNRXXXXXXXXXXXXXXXXXXXXXKRSHVVSSENAAVTVNASVSLKLEISLIDLNLPAP 240
           GGNRXXXXXXXXXXXXXXXXXXXXXKRSHVVSSENAAVTVNASVSLKLEISLIDLNLPAP
Sbjct: 181 GGNRXXXXXXXXXXXXXXXXXXXXXKRSHVVSSENAAVTVNASVSLKLEISLIDLNLPAP 240

Query: 241 IEEDDYSVVSDA 253
           IEEDDYSVVSDA
Sbjct: 241 IEEDDYSVVSDA 252

[Close]

BLAST of Carg23201-RA vs. NCBI nr
Match: XP_022969895.1 (zinc finger protein ZAT9-like [Cucurbita maxima])

HSP 1 Score: 333.6 bits (854), Expect = 5.9e-88
Identity = 231/252 (91.67%), Postives = 232/252 (92.06%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADDDE 60
           MESHIC LCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXX GGVPSSF SYSADDDE
Sbjct: 1   MESHICKLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXXGGVPSSFSSYSADDDE 60

Query: 61  FREDPKRIFNILLQDTESETXXXXXXXXXXXXYRKPPLEPSSSVSDTSPEEDLAMSLMML 120
           FREDPKRIFNILLQDTESE XXXXXXXXXXXXYRKPPLEPSSSVSDTSPEEDLAMSLMML
Sbjct: 61  FREDPKRIFNILLQDTESEXXXXXXXXXXXXXYRKPPLEPSSSVSDTSPEEDLAMSLMML 120

Query: 121 SRDRWMKPETKSLTGIKRKKKCGKCTKLFRSYRALFSHEKICQLETELDEEQEEHEEFKN 180
           SRDRWMKPETKSL GIKRK        LFRSYRALFSHEKICQLETELDEEQEEHEEFKN
Sbjct: 121 SRDRWMKPETKSLKGIKRKXXXXXXXXLFRSYRALFSHEKICQLETELDEEQEEHEEFKN 180

Query: 181 GGNRXXXXXXXXXXXXXXXXXXXXXKRSHVVSSENAAVTVNASVSLKLEISLIDLNLPAP 240
           GGNR   XXXXXXXXXXXXXXX   KRSH+VSS NAAVTVNASVSLKLEISLIDLNLPAP
Sbjct: 181 GGNRRVFXXXXXXXXXXXXXXXGGHKRSHLVSSTNAAVTVNASVSLKLEISLIDLNLPAP 240

Query: 241 IEEDDYSVVSDA 253
           IEEDDYSVVSDA
Sbjct: 241 IEEDDYSVVSDA 252

[Close]

BLAST of Carg23201-RA vs. NCBI nr
Match: XP_023551233.1 (zinc finger protein ZAT9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 296.6 bits (758), Expect = 8.1e-77
Identity = 221/252 (87.70%), Postives = 225/252 (89.29%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADDDE 60
           MESHIC LCFKS ANG+AYAAH XXXXXXXXXXXXXXXXXXXX GGVPSSF SYSADDDE
Sbjct: 1   MESHICKLCFKSLANGKAYAAHXXXXXXXXXXXXXXXXXXXXXXGGVPSSFSSYSADDDE 60

Query: 61  FREDPKRIFNILLQDTESETXXXXXXXXXXXXYRKPPLEPSSSVSDTSPEEDLAMSLMML 120
           FREDPKRIFNILLQ+TES  XXXXXXXXXXXX     LEPSSSVSDTSPEEDLAMSLMML
Sbjct: 61  FREDPKRIFNILLQETESXXXXXXXXXXXXXXXXXXXLEPSSSVSDTSPEEDLAMSLMML 120

Query: 121 SRDRWMKPETKSLTGIKRKKKCGKCTKLFRSYRALFSHEKICQLETELDEEQEEHEEFKN 180
           SRDRWMKPETKSL GIKRKK       LFRSYRALFSHEKICQLETELDEEQEEHEE KN
Sbjct: 121 SRDRWMKPETKSLKGIKRKKXXXXXXXLFRSYRALFSHEKICQLETELDEEQEEHEELKN 180

Query: 181 GGNRXXXXXXXXXXXXXXXXXXXXXKRSHVVSSENAAVTVNASVSLKLEISLIDLNLPAP 240
           G   XXXXXXXXXXXXXXXXXXXXX   HV+SSENAAV+VNASVSLKLEISLIDLNLPAP
Sbjct: 181 GXXXXXXXXXXXXXXXXXXXXXXXXXXXHVLSSENAAVSVNASVSLKLEISLIDLNLPAP 240

Query: 241 IEEDDYSVVSDA 253
           IEEDDYSVVSDA
Sbjct: 241 IEEDDYSVVSDA 252

[Close]

BLAST of Carg23201-RA vs. NCBI nr
Match: XP_022996407.1 (zinc finger protein ZAT4-like [Cucurbita maxima])

HSP 1 Score: 175.6 bits (444), Expect = 2.1e-40
Identity = 125/287 (43.55%), Postives = 151/287 (52.61%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFY-------- 60
           M+SH C LC + F NGRA   HM                    H  +PSS          
Sbjct: 1   MDSHKCKLCSRLFTNGRALGGHMKAHLTAAPALPLPPSKPPTIHVALPSSXXXXXXXXXD 60

Query: 61  SYSADDD----EFREDPKR-------IFNILLQDTESETXXXXXXXXXXXXYRKPPL--- 120
           S  ++ D    E RE+P         +F+I+LQD ESET             R+PPL   
Sbjct: 61  SLESEHDPTLYEVRENPNTNFRFSDPVFDIVLQDRESETDSRNPTCNRSKRRRQPPLEPP 120

Query: 121 EPSSSVSDTSPEEDLAMSLMMLSRDRWMKPET---------KSLTGIKRKKKCGKCTKLF 180
           EP+SSVS TSPEEDLAM LMMLSRDR ++ +          ++   ++RKKKC KCTK F
Sbjct: 121 EPASSVSYTSPEEDLAMCLMMLSRDRRIENQNQIPNQFEKIRAKKPLRRKKKCQKCTKHF 180

Query: 181 RSYRALFSHEKICQLETELD----EEQEEHEEFKNGGNRXXXXXXXXXXXXXXXXXXXXX 240
           RSYRALFSHEKICQL+TEL+                   X                    
Sbjct: 181 RSYRALFSHEKICQLKTELEXXXXXXXXXXXXXXXXXXXXIFKCPFCFKLFGSGQALGGH 240

Query: 241 KRSHVVSSENAAVTVNASVSLKLEISLIDLNLPAPIEEDDYSVVSDA 253
           KRSH VSS N  V+V++SVSLK+EISLIDLNLPAP+EEDDYSVVS+A
Sbjct: 241 KRSHFVSSTNGGVSVDSSVSLKMEISLIDLNLPAPLEEDDYSVVSNA 287

[Close]

BLAST of Carg23201-RA vs. NCBI nr
Match: XP_023532763.1 (zinc finger protein ZAT9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.9 bits (442), Expect = 3.5e-40
Identity = 127/296 (42.91%), Postives = 152/296 (51.35%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSS---------F 60
           M+SH C LC + F NGRA   HM                    H  +P S          
Sbjct: 17  MDSHKCKLCSRLFTNGRALGGHMKAHLTAAPALPLPPSKPPTIHVALPFSTXXXXXXXXX 76

Query: 61  YSYSADDD----EFREDPKR-------IFNILLQDTESETXXXXXXXXXXXXYRKPPL-- 120
            S  ++ +    E RE+P R       +F+I+LQD ESET             R+PPL  
Sbjct: 77  XSLESEHNPTLYEVRENPNRDFRFSDPVFDIVLQDRESETESKNPTCNRSKRRRQPPLEL 136

Query: 121 -EPSSSVSDTSPEEDLAMSLMMLSRDRWMKPET---------KSLTGIKRKKKCGKCTKL 180
            EP+SSVS TSPEEDLAM LMMLSRDR ++ +          ++   ++RKKKC KCTK 
Sbjct: 137 PEPASSVSYTSPEEDLAMCLMMLSRDRRIQNQNQIPNQFEKIRAKKPLRRKKKCQKCTKH 196

Query: 181 FRSYRALFSHEKICQLETE-----------LDEEQEEHEEFKNGGN-RXXXXXXXXXXXX 240
           FRSYRALFSHEKICQL+TE                       NGGN R            
Sbjct: 197 FRSYRALFSHEKICQLKTEXXXXXXXXXXXXXXXXXXXXXXXNGGNRRRIFKCPFCFKLF 256

Query: 241 XXXXXXXXXKRSHVVSSENAAVTVNASVSLKLEISLIDLNLPAPIEEDDYSVVSDA 253
                    KRSH VSS N  V+VN+SVSLK+EISLIDLNLPAP+EED YSVVS+A
Sbjct: 257 GSGQALGGHKRSHFVSSTNGGVSVNSSVSLKVEISLIDLNLPAPLEEDHYSVVSNA 312

[Close]

BLAST of Carg23201-RA vs. TAIR10
Match: AT3G60580.1 (C2H2-like zinc finger protein)

HSP 1 Score: 82.0 bits (201), Expect = 5.7e-16
Identity = 89/300 (29.67%), Postives = 117/300 (39.00%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADDDE 60
           MES+ C +CFKSF NG+A   HM                        PS   SY  + D 
Sbjct: 1   MESYKCRVCFKSFVNGKALGGHMRSHMSNSHEEEQR-----------PSQL-SYETESDV 60

Query: 61  FREDPKRIF--NILLQDTESETXXXXXXXXXXXXYRKPPLE------------------- 120
              DPK  F  ++LL+D ESE+              K   +                   
Sbjct: 61  SSSDPKFAFTSSVLLEDGESESESSRNVINLTRKRSKRTRKLDSFVTKKVKTSQLGYKPE 120

Query: 121 -----PSSSVSDTSPEEDLAMSLMMLSRDRWMK--------------PETKSLTGIKR-- 180
                P SS SDT+ EEDLA  LMMLSRD+W K               E++    I R  
Sbjct: 121 SDQEPPHSSASDTTTEEDLAFCLMMLSRDKWKKNKSNKEVVEEIETEEESEGYNKINRAT 180

Query: 181 ---KKKCGKCTKLFRSYRALFSHEKICQLETELDEEQEEHEEFKNGG----NRXXXXXXX 240
              + KC  C K+F+SY+AL  H    +     + + E+  E +        +       
Sbjct: 181 TKGRYKCETCGKVFKSYQALGGHRASHKKNRVSNNKTEQRSETEYDNVVVVAKRIHECPI 240

Query: 241 XXXXXXXXXXXXXXKRSHVVS--SENAAVTVNASVSLKLEISLIDLNLPAPIEEDDYSVV 250
                         KRSH V   S N    V+ + S+K    +IDLNLPAP EED+ SVV
Sbjct: 241 CLRVFASGQALGGHKRSHGVGNLSVNQQRRVHRNESVKQR--MIDLNLPAPTEEDEVSVV 286

[Close]

BLAST of Carg23201-RA vs. TAIR10
Match: AT1G02030.1 (C2H2-like zinc finger protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-07
Identity = 94/286 (32.87%), Postives = 118/286 (41.26%), Query Frame = 0


Query: 2   ESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADDDEF 61
           E H C LC+KSFANGRA   HM                       +PS   SYS+     
Sbjct: 3   ERHKCKLCWKSFANGRALGGHMRSHMLIHP---------------LPSQPESYSSS---- 62

Query: 62  REDPKRIFNILLQDTESETXXXXXXXXXXXXYRKPPL----------------------- 121
             DP      +LQD ESET              +  +                       
Sbjct: 63  MADP----GFVLQDRESETESSKKPSRKRSRLNRRSISSLRHQQSNEEGKSETARAADIK 122

Query: 122 -------------EPSSSVSD-TSPEEDLAMSLMMLSRDRW-----MKPETKSLTGIKRK 181
                        EP SSVSD  + EED+A+SLM+LSRD+W                 + 
Sbjct: 123 IGVQELSESCTEQEPMSSVSDAATTEEDVALSLMLLSRDKWXXXXXXXXXXXXXXXXNKW 182

Query: 182 KKCGKCTKLFRSYRALFSHEKICQLETELDEEQEEHEEFKNGGNRXXXXXXXXXXXXXXX 241
            +C  C K+F+SY+AL  H    + +    ++    E        XXXXXXXXXXXXXXX
Sbjct: 183 FECETCEKVFKSYQALGGHRASHKKKIAETDQLGSDELXXXXXXXXXXXXXXXXXXXXXX 242

Query: 242 XXXXXXKRSHVVSSENAAVTVNASVSLKLEISLIDLNLPAPIEEDD 246
           XXXXXX         N   T  + +     ISLIDLNLPAP EE++
Sbjct: 243 XXXXXXXXXXXXXXANNEFTRRSGII----ISLIDLNLPAPSEEEE 261

[Close]

BLAST of Carg23201-RA vs. TAIR10
Match: AT4G16610.1 (C2H2-like zinc finger protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.4e-06
Identity = 48/162 (29.63%), Postives = 58/162 (35.80%), Query Frame = 0


Query: 4   HICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADDDE--- 63
           H C LC KSF NGRA   HM                       +  S YS S+   +   
Sbjct: 5   HKCKLCSKSFCNGRALGGHMKSHLVSSQSSARKK---------LGDSVYSSSSSSSDGKA 64

Query: 64  ----FREDPKRIFNILLQDTESET-----------------------------------X 123
                RE+P++ F +   D ES T                                   X
Sbjct: 65  LAYGLRENPRKSFRVFNPDPESSTIYNSETETEPESGDPVKKRVRGXXXXXXXXXXXXXX 124

[Close]

BLAST of Carg23201-RA vs. Swiss-Prot
Match: sp|Q9M202|ZAT9_ARATH (Zinc finger protein ZAT9 OS=Arabidopsis thaliana OX=3702 GN=ZAT9 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-14
Identity = 89/300 (29.67%), Postives = 117/300 (39.00%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADDDE 60
           MES+ C +CFKSF NG+A   HM                        PS   SY  + D 
Sbjct: 1   MESYKCRVCFKSFVNGKALGGHMRSHMSNSHEEEQR-----------PSQL-SYETESDV 60

Query: 61  FREDPKRIF--NILLQDTESETXXXXXXXXXXXXYRKPPLE------------------- 120
              DPK  F  ++LL+D ESE+              K   +                   
Sbjct: 61  SSSDPKFAFTSSVLLEDGESESESSRNVINLTRKRSKRTRKLDSFVTKKVKTSQLGYKPE 120

Query: 121 -----PSSSVSDTSPEEDLAMSLMMLSRDRWMK--------------PETKSLTGIKR-- 180
                P SS SDT+ EEDLA  LMMLSRD+W K               E++    I R  
Sbjct: 121 SDQEPPHSSASDTTTEEDLAFCLMMLSRDKWKKNKSNKEVVEEIETEEESEGYNKINRAT 180

Query: 181 ---KKKCGKCTKLFRSYRALFSHEKICQLETELDEEQEEHEEFKNGG----NRXXXXXXX 240
              + KC  C K+F+SY+AL  H    +     + + E+  E +        +       
Sbjct: 181 TKGRYKCETCGKVFKSYQALGGHRASHKKNRVSNNKTEQRSETEYDNVVVVAKRIHECPI 240

Query: 241 XXXXXXXXXXXXXXKRSHVVS--SENAAVTVNASVSLKLEISLIDLNLPAPIEEDDYSVV 250
                         KRSH V   S N    V+ + S+K    +IDLNLPAP EED+ SVV
Sbjct: 241 CLRVFASGQALGGHKRSHGVGNLSVNQQRRVHRNESVKQR--MIDLNLPAPTEEDEVSVV 286

[Close]

BLAST of Carg23201-RA vs. Swiss-Prot
Match: sp|Q39092|ZAT1_ARATH (Zinc finger protein ZAT1 OS=Arabidopsis thaliana OX=3702 GN=ZAT1 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-06
Identity = 94/286 (32.87%), Postives = 118/286 (41.26%), Query Frame = 0


Query: 2   ESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADDDEF 61
           E H C LC+KSFANGRA   HM                       +PS   SYS+     
Sbjct: 3   ERHKCKLCWKSFANGRALGGHMRSHMLIHP---------------LPSQPESYSSS---- 62

Query: 62  REDPKRIFNILLQDTESETXXXXXXXXXXXXYRKPPL----------------------- 121
             DP      +LQD ESET              +  +                       
Sbjct: 63  MADP----GFVLQDRESETESSKKPSRKRSRLNRRSISSLRHQQSNEEGKSETARAADIK 122

Query: 122 -------------EPSSSVSD-TSPEEDLAMSLMMLSRDRW-----MKPETKSLTGIKRK 181
                        EP SSVSD  + EED+A+SLM+LSRD+W                 + 
Sbjct: 123 IGVQELSESCTEQEPMSSVSDAATTEEDVALSLMLLSRDKWXXXXXXXXXXXXXXXXNKW 182

Query: 182 KKCGKCTKLFRSYRALFSHEKICQLETELDEEQEEHEEFKNGGNRXXXXXXXXXXXXXXX 241
            +C  C K+F+SY+AL  H    + +    ++    E        XXXXXXXXXXXXXXX
Sbjct: 183 FECETCEKVFKSYQALGGHRASHKKKIAETDQLGSDELXXXXXXXXXXXXXXXXXXXXXX 242

Query: 242 XXXXXXKRSHVVSSENAAVTVNASVSLKLEISLIDLNLPAPIEEDD 246
           XXXXXX         N   T  + +     ISLIDLNLPAP EE++
Sbjct: 243 XXXXXXXXXXXXXXANNEFTRRSGII----ISLIDLNLPAPSEEEE 261

[Close]

BLAST of Carg23201-RA vs. TrEMBL
Match: tr|A0A0A0KMX8|A0A0A0KMX8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162030 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.7e-38
Identity = 132/277 (47.65%), Postives = 153/277 (55.23%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADDDE 60
           M SH C LC ++F NGRA   HM       XXXXXXXXXXXXX            +   E
Sbjct: 1   MVSHKCKLCSRAFTNGRALGGHMKAHLTAPXXXXXXXXXXXXXXXXXXXXXXXXXSTLYE 60

Query: 61  FREDPK--------RIFNILLQDTESETXXXXXXXXXXXXYRKPPL--EPSSSVSDTSPE 120
            R + K         +FNI+LQD ESET            +RKP +  EP+SSVSD SPE
Sbjct: 61  LRGNSKGRNFRFSDPVFNIVLQDRESETESKNPTRKRSKRWRKPEVEPEPASSVSDASPE 120

Query: 121 EDLAMSLMMLSRDRWMKPET---------------KSLTGIKRKKKCGKCTKLFRSYRAL 180
           EDLA+ LMMLSRDRW+K +                +   GI+RKKKC KC + FRSYRAL
Sbjct: 121 EDLAVCLMMLSRDRWIKNQNHNERRSSFEELGSKIRVKKGIRRKKKCEKCKEQFRSYRAL 180

Query: 181 FSHEKICQLETELDEEQEEHEEFKNGGNRXXXXXXXXXXXXXXXXXXXXXKRSHVVSSEN 240
           FSHEKICQ       EQEE +E   G  R                     KRSH++SS N
Sbjct: 181 FSHEKICQ------SEQEEEQE---GSRRRIFKCPFCYKLFGSGQALGGHKRSHLLSSTN 240

Query: 241 AAVTVNASVSLKLEISLIDLNLPAPIEEDDYSVVSDA 253
                N+SVS KL+ISLIDLNLPAP+EEDDYSVVSDA
Sbjct: 241 -----NSSVSFKLQISLIDLNLPAPLEEDDYSVVSDA 263

[Close]

BLAST of Carg23201-RA vs. TrEMBL
Match: tr|A0A1S3ATN8|A0A1S3ATN8_CUCME (zinc finger protein ZAT9 OS=Cucumis melo OX=3656 GN=LOC103482608 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.1e-32
Identity = 137/275 (49.82%), Postives = 156/275 (56.73%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADD-- 60
           M SH C LC ++F NGRA   HM       XXXXXXXXXXX  H    S+ Y    ++  
Sbjct: 1   MVSHKCKLCSRAFTNGRALGGHMKAHLTAPXXXXXXXXXXXSDHD--ESTLYELREENPK 60

Query: 61  -DEFR-EDPKRIFNILLQDTESE----TXXXXXXXXXXXXYRKPPLEPSSSVSDTSPEED 120
             +FR  DP  +FNI+LQD ESE     XXXXXXXXXXXX       P+SSVSD SPEED
Sbjct: 61  RGDFRFSDP--VFNIVLQDRESEXXXXXXXXXXXXXXXXXXXXXXXXPASSVSDASPEED 120

Query: 121 LAMSLMMLSRDRWMKPET---------------KSLTGIKRKKKCGKCTKLFRSYRALFS 180
           LA+ LMMLSRDRW++ +                K   GI+RKKKC KC K FRSYRALFS
Sbjct: 121 LAICLMMLSRDRWVESQNQNEGRSWFEELGSKIKVKKGIRRKKKCEKCKKQFRSYRALFS 180

Query: 181 HEKICQLETELDEEQEEHEEFKNGGNRXXXXXXXXXXXXXXXXXXXXXKRSHVVSSENAA 240
           HEKICQ                     X                    KRSH+VS+ N  
Sbjct: 181 HEKICQ----SXXXXXXXXXXXXXXXXXIFKCPFCYKLFGSGQALGGHKRSHLVSTTN-- 240

Query: 241 VTVNASVSLKLEISLIDLNLPAPIEEDDYSVVSDA 253
              N+SVSLKL+ISLIDLNLPAP+EEDDYSVVSDA
Sbjct: 241 ---NSSVSLKLQISLIDLNLPAPLEEDDYSVVSDA 262

[Close]

BLAST of Carg23201-RA vs. TrEMBL
Match: tr|I1MV17|I1MV17_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G142300 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 117/285 (41.05%), Postives = 145/285 (50.88%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYS-YSADDD 60
           M+ H C LC +SF+NGRA   HM                       +P   +S +S+ D 
Sbjct: 1   MDRHKCKLCSRSFSNGRALGGHMKAHLASLPLP-------------LPPKLHSCFSSSDS 60

Query: 61  E----FREDPKRIFNIL-LQDTESETXXXXXXXXXXXXYR-----------KPPLEPSSS 120
           E     RE+PK+   IL  +D ESET                          P  EP SS
Sbjct: 61  EQEQSLRENPKKTLRILDPEDRESETESNKNPTRQRSKRNWKSTMPKLSLGHPEAEPLSS 120

Query: 121 VSDTSPEEDLAMSLMMLSRDRWMK--------PETKSLTG--------IKRKKKCGKCTK 180
           VSDTSPEEDLAM LMMLSRD W +        P+T+  +G        ++ K  C  C K
Sbjct: 121 VSDTSPEEDLAMCLMMLSRDTWQEHKLANAGPPKTRCSSGSEIKLKNKVRSKHLCHACHK 180

Query: 181 LFRSYRALFSHEKICQLETELDEEQEEHEEFKNGGNRXXXXXXXXXXXXXXXXXXXXXKR 240
            FRS RAL SH  +C        ++ ++    +  N     XXXXXXXXXXXXXXXXX R
Sbjct: 181 SFRSSRALGSHRTLCS-----PRQEAQNNSIISNNNIKVFEXXXXXXXXXXXXXXXXXXR 240

Query: 241 SHVVSSENAAVTVNASVSLKLEISLIDLNLPAPIEEDDYSVVSDA 253
           SH++ S ++  TVN SV  KL+ S IDLNLPAP E+DD SVVSDA
Sbjct: 241 SHLIPSSSS--TVNHSV--KLKQSFIDLNLPAPAEDDDLSVVSDA 263

[Close]

BLAST of Carg23201-RA vs. TrEMBL
Match: tr|A0A059TAB3|A0A059TAB3_SOYBN (C2H2-type zinc finger protein 5 OS=Glycine max OX=3847 GN=ZFP5 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 116/280 (41.43%), Postives = 141/280 (50.36%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADDDE 60
           M+ H C LC +SF+NGRA   HM                    H    S   S S  +  
Sbjct: 1   MDRHKCKLCSRSFSNGRALGGHM-----KAHLASLPLPLPPKLHSCFSS---SDSKQEQS 60

Query: 61  FREDPKRIFNIL-LQDTESETXXXXXXXXXXXXYR-----------KPPLEPSSSVSDTS 120
            RE+PK+   IL  +D ESET                          P  EP SSVSDTS
Sbjct: 61  LRENPKKTLRILDPEDRESETESNKNPTRQRSKRNWKSTMPKLSLGHPEAEPLSSVSDTS 120

Query: 121 PEEDLAMSLMMLSRDRWMK--------PETKSLTG--------IKRKKKCGKCTKLFRSY 180
           PEEDLAM LMMLSRD W +        P+T+  +G        ++ K  C  C K FRS 
Sbjct: 121 PEEDLAMCLMMLSRDTWQEHKLANAGPPKTRCSSGSEIKLKNKVRSKHLCHACHKSFRSS 180

Query: 181 RALFSHEKICQLETELDEEQEEHEEFKNGGNRXXXXXXXXXXXXXXXXXXXXXKRSHVVS 240
           RAL SH  +C        ++ ++    +  N     XXXXXXXXXXXXXXXXX RSH++ 
Sbjct: 181 RALGSHRTLCS-----PRQEAQNNSIISNNNIKVFEXXXXXXXXXXXXXXXXXXRSHLIP 240

Query: 241 SENAAVTVNASVSLKLEISLIDLNLPAPIEEDDYSVVSDA 253
           S ++  TVN SV  KL+ S IDLNLPAP E+DD SVVSDA
Sbjct: 241 SSSS--TVNHSV--KLKQSFIDLNLPAPAEDDDLSVVSDA 263

[Close]

BLAST of Carg23201-RA vs. TrEMBL
Match: tr|A0A2K2B391|A0A2K2B391_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G077200v3 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 117/278 (42.09%), Postives = 143/278 (51.44%), Query Frame = 0


Query: 1   MESHICNLCFKSFANGRAYAAHMXXXXXXXXXXXXXXXXXXXXHGGVPSSFYSYSADDD- 60
           ME H C LC ++F NGRA   HM                         SS YS S+D + 
Sbjct: 1   MERHKCKLCVRTFPNGRALGGHMKAHLAATRQQLGGLDRNESF-----SSSYSSSSDPEF 60

Query: 61  EFREDPKRIFNILLQDTESETXXXXXXXXXXXXYRKPPLEPS--SSVSDTSPEEDLAMSL 120
            F  D     ++++QD ESET             RK   EP   SSVSDTSPEED+A  L
Sbjct: 61  SFTVDAG---SVVVQDRESETESRNPTRRRSKRIRKSCAEPEPVSSVSDTSPEEDVARCL 120

Query: 121 MMLSRDRWMK-----------------------PETKSLTGIKRKKKCGKCTKLFRSYRA 180
           MMLSRD WM+                        E   ++ I+ K +C KC KLFRS RA
Sbjct: 121 MMLSRDVWMRNIEEEYEEQGGKDGERSVEMLEEAEEIKVSKIRGKFRCEKCMKLFRSSRA 180

Query: 181 LFSHEKICQLETELDEEQEEHEEFKNGGNRXXXXXXXXXXXXXXXXXXXXXKRSHVVSSE 240
           L  H++IC L      E        +  +R XXXXXXXXXXXXXXXXXXXX    + SS 
Sbjct: 181 LSGHKRICSLNA---TEVRRFAGSADANDRIXXXXXXXXXXXXXXXXXXXXXXHLIGSST 240

Query: 241 NAAVTVNASVSLKLEISLIDLNLPAPIEEDDYSVVSDA 253
           + +  V AS   KLE +LIDLNLPAP+E+D++SVVSDA
Sbjct: 241 SISGVVEAST--KLENNLIDLNLPAPVEDDEFSVVSDA 265

The following BLAST results are available for this feature:

BLAST of Carg23201-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922191.1	5.4e-97	98.81	zinc finger protein ZAT9-like [Cucurbita moschata]	[more]
XP_022969895.1	5.9e-88	91.67	zinc finger protein ZAT9-like [Cucurbita maxima]	[more]
XP_023551233.1	8.1e-77	87.70	zinc finger protein ZAT9-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996407.1	2.1e-40	43.55	zinc finger protein ZAT4-like [Cucurbita maxima]	[more]
XP_023532763.1	3.5e-40	42.91	zinc finger protein ZAT9-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg23201-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60580.1	5.7e-16	29.67	C2H2-like zinc finger protein	[more]
AT1G02030.1	1.6e-07	32.87	C2H2-like zinc finger protein	[more]
AT4G16610.1	2.4e-06	29.63	C2H2-like zinc finger protein	[more]

BLAST of Carg23201-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M202\|ZAT9_ARATH	1.0e-14	29.67	Zinc finger protein ZAT9 OS=Arabidopsis thaliana OX=3702 GN=ZAT9 PE=2 SV=1	[more]
sp\|Q39092\|ZAT1_ARATH	3.0e-06	32.87	Zinc finger protein ZAT1 OS=Arabidopsis thaliana OX=3702 GN=ZAT1 PE=2 SV=1	[more]

BLAST of Carg23201-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMX8\|A0A0A0KMX8_CUCSA	1.7e-38	47.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162030 PE=4 SV=1	[more]
tr\|A0A1S3ATN8\|A0A1S3ATN8_CUCME	3.1e-32	49.82	zinc finger protein ZAT9 OS=Cucumis melo OX=3656 GN=LOC103482608 PE=4 SV=1	[more]
tr\|I1MV17\|I1MV17_SOYBN	1.3e-22	41.05	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G142300 PE=4 SV=1	[more]
tr\|A0A059TAB3\|A0A059TAB3_SOYBN	3.8e-22	41.43	C2H2-type zinc finger protein 5 OS=Glycine max OX=3847 GN=ZFP5 PE=2 SV=1	[more]
tr\|A0A2K2B391\|A0A2K2B391_POPTR	1.9e-21	42.09	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G077200v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036236	Znf_C2H2_sf
IPR013087	Znf_C2H2_type

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg23201	Carg23201	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23201-RA.CDS.1	Carg23201-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23201-RA.exon.1	Carg23201-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg23201-RA	Carg23201-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 140..160 e-value: 140.0 score: 3.3 coord: 4..26 e-value: 0.091 score: 21.9 coord: 187..209 e-value: 0.48 score: 19.5
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 189..209
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 6..26
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 4..26 score: 8.621
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 187..214 score: 9.556
None	No IPR available	GENE3D	G3DSA:3.30.160.60		coord: 139..209 e-value: 3.0E-5 score: 26.3
None	No IPR available	PFAM	PF13912	zf-C2H2_6	coord: 186..209 e-value: 6.6E-9 score: 35.4 coord: 141..158 e-value: 0.1 score: 12.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..111
None	No IPR available	PANTHER	PTHR26374	FAMILY NOT NAMED	coord: 1..251
None	No IPR available	PANTHER	PTHR26374:SF185	C2H2 AND C2HC ZINC FINGER-CONTAINING PROTEIN	coord: 1..251
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	coord: 134..160 coord: 3..26
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	coord: 184..210