Carg23198-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23198-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat
Location	Cucurbita_argyrosperma_scaffold_144 : 322135 .. 324627 (-)
Sequence length	1746

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCACAAATCGTTCAAGGACGCCATTGCTCCCCTTATACACAAATCCAAATCGCTGCAACATCTCAAAGAAATCCATGGCCACCTTCTCAAGACCCACCTTCCTGAAAGTCCATATGGCGTCGCACCTTTACTCGCCGTCGCTGCAACTTCCGGCGATAATGACGGTTCTTTCTTTTCTTACGCTTGTGCAATTTTTAAGAACCTTCGGCATAGGAATACTTTCATGTATAATTCGATGATCAGAGGGTATGTTCTATCGCGGGCTCCGAAACAAGCGATTTTGTGTTACTTAGCTTTGATTGATCAAGGGCTTTTTGCTAATAACTATACTTTTCCGCCATTGATAAAAGCTTGCGCGTTAGTTTATAGTGAATTGAAGCGAGTAGGTTATTTGGTTCATGCCCATGTTATTGTTCTTGGATATGAGAATGATCCATTTGTTGTGAGTACGCTTGTTGAATTTTATTCCTTAATCGATTTGAAAGTTGCACGCGTATTGTTCGACAAAAGTTCTGTGAAGGATGTGGTTGTGTGGACGGCGATGGTTGATGGGTATGGGAAGGTGGGGGATGTTGAGAGTGCTAGAGAACTGTTTGATGAAATGCCTGTGAGGAATGTAATTTCTTGGAGTGCTATGATAGCTGCTTATTCTCGGGTTAGTGACTTCAGAGAGGTGCTTTGTTTGTTTAGACAAATGCAAGAGAGGGATATTAAGCCTAATGAATCAATTACTGTTAGTGTTCTTACTGCTTGTGCTCATCTTGGTGCTATAACACAAGGACTTTGGATGCACTCTTATGCCAAGCGCCACCGTTGGGAATCGAACCCGATATTGGCTACTGCATTGGTTGATATGTATTCAAAATGTGGTTACATTGAATCAGCATTAGCAGTGTTTGAGGGCATTCCAAATAAAGATGCAGGGGCATGGAATGCAATGATTTCTGGTGTTGCAATGAATGGGGATGTGACGAAATCGCTTGAGTTATTTGATAAAATGATTCTCAATGGAACTCAGGCTACAGAAACTACATTTGTAGCTGTTCTTGCTGCTTGTACGCACGCCAAGATGGTCGACACTGGCCTTAAAATATTTGACCAAATGTATACTGTTTATGGGGTTCGACCTCAATTCGAGCATTATGCTTGTGTGGTTGATCTTATGGCTAGAGCAGGTATGGTAGAGGATGCTGAGGAATTTATAGAGAAGAAAATGGGAGGCTTTAGTAATGTGGATGCCAATGTGTGGGGAGCAATGCTGGGTGCTTGTAGAAAATATGGGAATATTGAAGTTGGGAACAGAATTTGGAGAAAGCTTTTAGCTATGGGTGTAACAGATTGTGGTACGCAAGTCCTTTCATACAACATCTATGCTGAAGCTGGATGGGAAATGGCGGCGAAGGAGGTAAGGAAAAATTTATCAGAAACCAGGTCGAAAAAAACGCCAGGCTGCAGCGTGTTGGAGGTCGATGGTGCAGTTCAAGAGTTCCTTGCAGGCGATCTCTCTCATCCTCAAGTGCAAGATATATGTGAAATGCTTGGTTCTCTTTCTAGAATGGTGAAGTGGGAGACCCTTGGTCAAGTAATTTAGAAATGGCTTCCAAACAGGAGATGAAAGTCTTTTAGAAGGTTCACATAATTGCAAGTCTGCCATTTGTTGGTAAGAAATAGCTTAGGCTATTAAGTAATGAATTTCCTTATCTTTCTAAAAGCATAACAAAATTCTTTTCATTACAGGGAAAGAAGCTGTGCTTAAGATGGGGAATGCACATCGTCATGGCCAACGTAAGGTCGACATTTTTATTCCGAGGTCGGAGGTTCAAATCTCTTTCATATCTTTTTACCAGTAGATGACCTATACTTTAAGGGTATTCTCGTGTCCTCCATTTGCAGAAGTCATTGAGAGTCTGTGAAATCCCACATCGGTTGAGGAGAAGAACGAATCATTCTTTATAAGGGCGTGGAAACCTCTCCCTAGTAGACACGTTTAAAAAACCTTGAGGGGAAGTCCGAAAGGAAAAGGCCAAAGAGGACAATATCTGCTAGCGGTGGACTTGGGCTGTTACAGACACCTTTAGCAAATCATCTTCACGGTAAGCCTATATCTATAATTTCGACATGTGTTCAGCTGCACTACTTTTCTAGGACTTTATTGAAAGTTTTGACTTTGAATTCTTCTTTGTCACGGTTGGCTGCCTGTTTATTTATTTTCTGGGACTACTTCTGGTAAACTGGATGTGTACTTGCAAGTTTTCTAAACAATAGGGTTTTACTCTTTTAGTTGTGTACTGAGCCTGTTTTTTTAGTTAAGACTACTGAGTATTTTTAAAAGCGTAGAGAGAATGCAGCTTAGCTAATGTATTGTTGATAAAGACAGCACCTGGAGTATACTGCCCTCAAGAATCTCCATCTGTCTCTCCAGGCATGGAAAATAAAACGGTGCTCATTGATGGAACTCAATGGTATGGGCCATTTGGGGCATGAGTGA

mRNA sequence

ATGATTCACAAATCGTTCAAGGACGCCATTGCTCCCCTTATACACAAATCCAAATCGCTGCAACATCTCAAAGAAATCCATGGCCACCTTCTCAAGACCCACCTTCCTGAAAGTCCATATGGCGTCGCACCTTTACTCGCCGTCGCTGCAACTTCCGGCGATAATGACGGTTCTTTCTTTTCTTACGCTTGTGCAATTTTTAAGAACCTTCGGCATAGGAATACTTTCATGTATAATTCGATGATCAGAGGGTATGTTCTATCGCGGGCTCCGAAACAAGCGATTTTGTGTTACTTAGCTTTGATTGATCAAGGGCTTTTTGCTAATAACTATACTTTTCCGCCATTGATAAAAGCTTGCGCGTTAGTTTATAGTGAATTGAAGCGAGTAGGTTATTTGGTTCATGCCCATGTTATTGTTCTTGGATATGAGAATGATCCATTTGTTGTGAGTACGCTTGTTGAATTTTATTCCTTAATCGATTTGAAAGTTGCACGCGTATTGTTCGACAAAAGTTCTGTGAAGGATGTGGTTGTGTGGACGGCGATGGTTGATGGGTATGGGAAGGTGGGGGATGTTGAGAGTGCTAGAGAACTGTTTGATGAAATGCCTGTGAGGAATGTAATTTCTTGGAGTGCTATGATAGCTGCTTATTCTCGGGTTAGTGACTTCAGAGAGGTGCTTTGTTTGTTTAGACAAATGCAAGAGAGGGATATTAAGCCTAATGAATCAATTACTGTTAGTGTTCTTACTGCTTGTGCTCATCTTGGTGCTATAACACAAGGACTTTGGATGCACTCTTATGCCAAGCGCCACCGTTGGGAATCGAACCCGATATTGGCTACTGCATTGGTTGATATGTATTCAAAATGTGGTTACATTGAATCAGCATTAGCAGTGTTTGAGGGCATTCCAAATAAAGATGCAGGGGCATGGAATGCAATGATTTCTGGTGTTGCAATGAATGGGGATGTGACGAAATCGCTTGAGTTATTTGATAAAATGATTCTCAATGGAACTCAGGCTACAGAAACTACATTTGTAGCTGTTCTTGCTGCTTGTACGCACGCCAAGATGGTCGACACTGGCCTTAAAATATTTGACCAAATGTATACTGTTTATGGGGTTCGACCTCAATTCGAGCATTATGCTTGTGTGGTTGATCTTATGGCTAGAGCAGGTATGGTAGAGGATGCTGAGGAATTTATAGAGAAGAAAATGGGAGGCTTTAGTAATGTGGATGCCAATGTGTGGGGAGCAATGCTGGGTGCTTGTAGAAAATATGGGAATATTGAAGTTGGGAACAGAATTTGGAGAAAGCTTTTAGCTATGGGTGTAACAGATTGTGGTACGCAAGTCCTTTCATACAACATCTATGCTGAAGCTGGATGGGAAATGGCGGCGAAGGAGGTAAGGAAAAATTTATCAGAAACCAGGTCGAAAAAAACGCCAGGCTGCAGCGTGTTGGAGGTCGATGGTGCAGTTCAAGAGTTCCTTGCAGGCGATCTCTCTCATCCTCAAGTGCAAGATATATGTGAAATGCTTGGTTCTCTTTCTAGAATGGTGAAGTGGGAGACCCTTGGTCAAGGAAAGAAGCTGTGCTTAAGATGGGGAATGCACATCGTCATGGCCAACCACCTGGAGTATACTGCCCTCAAGAATCTCCATCTGTCTCTCCAGGCATGGAAAATAAAACGGTGCTCATTGATGGAACTCAATGGTATGGGCCATTTGGGGCATGAGTGA

Coding sequence (CDS)

ATGATTCACAAATCGTTCAAGGACGCCATTGCTCCCCTTATACACAAATCCAAATCGCTGCAACATCTCAAAGAAATCCATGGCCACCTTCTCAAGACCCACCTTCCTGAAAGTCCATATGGCGTCGCACCTTTACTCGCCGTCGCTGCAACTTCCGGCGATAATGACGGTTCTTTCTTTTCTTACGCTTGTGCAATTTTTAAGAACCTTCGGCATAGGAATACTTTCATGTATAATTCGATGATCAGAGGGTATGTTCTATCGCGGGCTCCGAAACAAGCGATTTTGTGTTACTTAGCTTTGATTGATCAAGGGCTTTTTGCTAATAACTATACTTTTCCGCCATTGATAAAAGCTTGCGCGTTAGTTTATAGTGAATTGAAGCGAGTAGGTTATTTGGTTCATGCCCATGTTATTGTTCTTGGATATGAGAATGATCCATTTGTTGTGAGTACGCTTGTTGAATTTTATTCCTTAATCGATTTGAAAGTTGCACGCGTATTGTTCGACAAAAGTTCTGTGAAGGATGTGGTTGTGTGGACGGCGATGGTTGATGGGTATGGGAAGGTGGGGGATGTTGAGAGTGCTAGAGAACTGTTTGATGAAATGCCTGTGAGGAATGTAATTTCTTGGAGTGCTATGATAGCTGCTTATTCTCGGGTTAGTGACTTCAGAGAGGTGCTTTGTTTGTTTAGACAAATGCAAGAGAGGGATATTAAGCCTAATGAATCAATTACTGTTAGTGTTCTTACTGCTTGTGCTCATCTTGGTGCTATAACACAAGGACTTTGGATGCACTCTTATGCCAAGCGCCACCGTTGGGAATCGAACCCGATATTGGCTACTGCATTGGTTGATATGTATTCAAAATGTGGTTACATTGAATCAGCATTAGCAGTGTTTGAGGGCATTCCAAATAAAGATGCAGGGGCATGGAATGCAATGATTTCTGGTGTTGCAATGAATGGGGATGTGACGAAATCGCTTGAGTTATTTGATAAAATGATTCTCAATGGAACTCAGGCTACAGAAACTACATTTGTAGCTGTTCTTGCTGCTTGTACGCACGCCAAGATGGTCGACACTGGCCTTAAAATATTTGACCAAATGTATACTGTTTATGGGGTTCGACCTCAATTCGAGCATTATGCTTGTGTGGTTGATCTTATGGCTAGAGCAGGTATGGTAGAGGATGCTGAGGAATTTATAGAGAAGAAAATGGGAGGCTTTAGTAATGTGGATGCCAATGTGTGGGGAGCAATGCTGGGTGCTTGTAGAAAATATGGGAATATTGAAGTTGGGAACAGAATTTGGAGAAAGCTTTTAGCTATGGGTGTAACAGATTGTGGTACGCAAGTCCTTTCATACAACATCTATGCTGAAGCTGGATGGGAAATGGCGGCGAAGGAGGTAAGGAAAAATTTATCAGAAACCAGGTCGAAAAAAACGCCAGGCTGCAGCGTGTTGGAGGTCGATGGTGCAGTTCAAGAGTTCCTTGCAGGCGATCTCTCTCATCCTCAAGTGCAAGATATATGTGAAATGCTTGGTTCTCTTTCTAGAATGGTGAAGTGGGAGACCCTTGGTCAAGGAAAGAAGCTGTGCTTAAGATGGGGAATGCACATCGTCATGGCCAACCACCTGGAGTATACTGCCCTCAAGAATCTCCATCTGTCTCTCCAGGCATGGAAAATAAAACGGTGCTCATTGATGGAACTCAATGGTATGGGCCATTTGGGGCATGAGTGA

Protein sequence

MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFFSYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKACALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVWTAMVDGYGKVGDVESARELFDEMPVRNVISWSAMIAAYSRVSDFREVLCLFRQMQERDIKPNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAVFEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMVDTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGAMLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRSKKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETLGQGKKLCLRWGMHIVMANHLEYTALKNLHLSLQAWKIKRCSLMELNGMGHLGHE

Homology

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BLAST of Carg23198-RA vs. NCBI nr
Match: XP_022922110.1 (pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita moschata] >XP_022922111.1 pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita moschata] >XP_022922112.1 pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita moschata] >XP_022922113.1 pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita moschata])

HSP 1 Score: 949.9 bits (2454), Expect = 4.0e-273
Identity = 527/529 (99.62%), Postives = 527/529 (99.62%), Query Frame = 0


Query: 1   MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF 60
           MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF
Sbjct: 1   MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF 60

Query: 61  SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKAC 120
           SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYL LIDQGLFANNYTFPPLIKAC
Sbjct: 61  SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLDLIDQGLFANNYTFPPLIKAC 120

Query: 121 ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW 180
           ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW
Sbjct: 121 ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW 180

Query: 181 TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240
           TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K
Sbjct: 181 TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIK 240

Query: 241 PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV 300
           PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV
Sbjct: 241 PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV 300

Query: 301 FEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV 360
           FEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV
Sbjct: 301 FEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV 360

Query: 361 DTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA 420
           DTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA
Sbjct: 361 DTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA 420

Query: 421 MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS 480
           MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS
Sbjct: 421 MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS 480

Query: 481 KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETLGQ 530
           KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETLGQ
Sbjct: 481 KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETLGQ 529

[Close]

BLAST of Carg23198-RA vs. NCBI nr
Match: XP_023549650.1 (pentatricopeptide repeat-containing protein At5g06540-like [Cucurbita pepo subsp. pepo] >XP_023549651.1 pentatricopeptide repeat-containing protein At5g06540-like [Cucurbita pepo subsp. pepo] >XP_023549652.1 pentatricopeptide repeat-containing protein At5g06540-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 936.8 bits (2420), Expect = 3.5e-269
Identity = 522/529 (98.68%), Postives = 524/529 (99.05%), Query Frame = 0


Query: 1   MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF 60
           MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF
Sbjct: 1   MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF 60

Query: 61  SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKAC 120
           SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYL LIDQGLFANNYTFPPLIKA 
Sbjct: 61  SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLDLIDQGLFANNYTFPPLIKAS 120

Query: 121 ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW 180
           ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW
Sbjct: 121 ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW 180

Query: 181 TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240
           TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K
Sbjct: 181 TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIK 240

Query: 241 PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV 300
           PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESN ILATALVDMYSKCGYIESALAV
Sbjct: 241 PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNLILATALVDMYSKCGYIESALAV 300

Query: 301 FEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV 360
           FEGI NKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV
Sbjct: 301 FEGISNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV 360

Query: 361 DTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA 420
           DTGLK+FDQMYTVYGV+PQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA
Sbjct: 361 DTGLKLFDQMYTVYGVQPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA 420

Query: 421 MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS 480
           MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS
Sbjct: 421 MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS 480

Query: 481 KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETLGQ 530
           KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETLGQ
Sbjct: 481 KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETLGQ 529

[Close]

BLAST of Carg23198-RA vs. NCBI nr
Match: XP_022970147.1 (pentatricopeptide repeat-containing protein At5g48910-like [Cucurbita maxima] >XP_022970148.1 pentatricopeptide repeat-containing protein At5g48910-like [Cucurbita maxima] >XP_022970149.1 pentatricopeptide repeat-containing protein At5g48910-like [Cucurbita maxima] >XP_022970150.1 pentatricopeptide repeat-containing protein At5g48910-like [Cucurbita maxima])

HSP 1 Score: 935.3 bits (2416), Expect = 1.0e-268
Identity = 518/529 (97.92%), Postives = 523/529 (98.87%), Query Frame = 0


Query: 1   MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF 60
           MIHKSFKDAI PLI+KSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF
Sbjct: 1   MIHKSFKDAIVPLINKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF 60

Query: 61  SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKAC 120
           SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYL L+DQGLFANNYTFPPLIKAC
Sbjct: 61  SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLDLVDQGLFANNYTFPPLIKAC 120

Query: 121 ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW 180
           ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLK ARVLFDKSSVKDVVVW
Sbjct: 121 ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKTARVLFDKSSVKDVVVW 180

Query: 181 TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240
           TAMVDGYGK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K
Sbjct: 181 TAMVDGYGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIK 240

Query: 241 PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV 300
           PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV
Sbjct: 241 PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV 300

Query: 301 FEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV 360
           FEGIPNKDAGAWNAMISGVAMNGDVTKSL+LFDKMILNGTQATETTFVAVLAACTHAKMV
Sbjct: 301 FEGIPNKDAGAWNAMISGVAMNGDVTKSLKLFDKMILNGTQATETTFVAVLAACTHAKMV 360

Query: 361 DTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA 420
           DTGLK+FDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKM GFSNVDANVWGA
Sbjct: 361 DTGLKLFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMEGFSNVDANVWGA 420

Query: 421 MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS 480
           MLGACRKYGNIEVGNRIW+KLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS
Sbjct: 421 MLGACRKYGNIEVGNRIWKKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS 480

Query: 481 KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETLGQ 530
           KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETLGQ
Sbjct: 481 KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETLGQ 529

[Close]

BLAST of Carg23198-RA vs. NCBI nr
Match: XP_022154784.1 (pentatricopeptide repeat-containing protein At5g66520-like [Momordica charantia])

HSP 1 Score: 828.6 bits (2139), Expect = 1.4e-236
Identity = 462/529 (87.33%), Postives = 492/529 (93.01%), Query Frame = 0


Query: 1   MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF 60
           MI K+FKD I PL++KSKSLQHLK+IH HLLKTHLPE+PY  APLLAVAATSGD+ GS F
Sbjct: 1   MIPKTFKDTIVPLLNKSKSLQHLKQIHAHLLKTHLPENPYAXAPLLAVAATSGDDSGSLF 60

Query: 61  SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKAC 120
           SYACAIF+NLR RNTFMYNSMIRGYVLSR+P QAILCYL LI+ GL ANNYTF PLIKAC
Sbjct: 61  SYACAIFENLRQRNTFMYNSMIRGYVLSRSPIQAILCYLDLINHGLLANNYTFQPLIKAC 120

Query: 121 ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW 180
           ALVY +LKR G LVHAHVIVLGYENDPFVVSTLVEFYSL+DLK+AR LFDKSSVKDVVVW
Sbjct: 121 ALVYHDLKRTGNLVHAHVIVLGYENDPFVVSTLVEFYSLVDLKIARQLFDKSSVKDVVVW 180

Query: 181 TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240
           TAMVDGYGK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK
Sbjct: 181 TAMVDGYGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240

Query: 241 PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV 300
           PNES+ VSVLTACAHLGAITQG+WMHSYAKR+R ESNPILATALVDMYSKCGYI+SAL+V
Sbjct: 241 PNESVVVSVLTACAHLGAITQGVWMHSYAKRYRLESNPILATALVDMYSKCGYIKSALSV 300

Query: 301 FEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV 360
           F+GI NKDAGAWNAMISGVAMNGDV KSLELFD+M++ GT ATETTFVA+L ACTHAKMV
Sbjct: 301 FDGISNKDAGAWNAMISGVAMNGDVKKSLELFDEMVIKGTNATETTFVAILTACTHAKMV 360

Query: 361 DTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA 420
           D GLK+FDQMYTVYGV PQ EH+ACVVDLMARAGMVEDAE FIE+KMGGFS VDANVWGA
Sbjct: 361 DRGLKLFDQMYTVYGVWPQLEHFACVVDLMARAGMVEDAERFIEEKMGGFSKVDANVWGA 420

Query: 421 MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS 480
           +LGACRKYGNIE GNRIWRKL AMG++DCGTQVLSYNIYAEAGWEMAAKEVRK  +E R 
Sbjct: 421 VLGACRKYGNIEAGNRIWRKLSAMGISDCGTQVLSYNIYAEAGWEMAAKEVRKFFAEARM 480

Query: 481 KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETLGQ 530
           KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLS+MVKWETLGQ
Sbjct: 481 KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSKMVKWETLGQ 529

[Close]

BLAST of Carg23198-RA vs. NCBI nr
Match: XP_008437067.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like isoform X1 [Cucumis melo])

HSP 1 Score: 776.9 bits (2005), Expect = 4.7e-221
Identity = 437/527 (82.92%), Postives = 476/527 (90.32%), Query Frame = 0


Query: 1   MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF 60
           MIH++F DAI+PL+ K KS+QHLK+IH HLLKT+LP++PY ++PLL VAATSG +  SFF
Sbjct: 1   MIHQTFNDAISPLLRKCKSVQHLKQIHAHLLKTYLPQNPYAISPLLEVAATSGCDGDSFF 60

Query: 61  SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKAC 120
           SYAC IFKNL+ RN FMYNSMIRGY LSR PKQAILCYL LID G  AN YTFPPLIKAC
Sbjct: 61  SYACRIFKNLQQRNIFMYNSMIRGYFLSRFPKQAILCYLDLIDHGFLANKYTFPPLIKAC 120

Query: 121 ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW 180
           ALVY ELKR+GYLVHAHV+VLGYEND FVVS LVEFYSL DLKVARVLFDKSS KDVVVW
Sbjct: 121 ALVYRELKRIGYLVHAHVVVLGYENDAFVVSALVEFYSLFDLKVARVLFDKSSAKDVVVW 180

Query: 181 TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240
           T MVDGYGK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK
Sbjct: 181 TVMVDGYGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240

Query: 241 PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV 300
           PN+S+ VSVLTACAHLGAITQGLWMHSYAKR+  ++NPILATALVDMYSKCGYIESAL V
Sbjct: 241 PNDSVIVSVLTACAHLGAITQGLWMHSYAKRYGLDANPILATALVDMYSKCGYIESALEV 300

Query: 301 FEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV 360
           FEGI NKDAGAWNAMISGVAM GDV KSLELFDKMI +GTQATE TFV++LAACTHAKMV
Sbjct: 301 FEGISNKDAGAWNAMISGVAMTGDVMKSLELFDKMIASGTQATEATFVSILAACTHAKMV 360

Query: 361 DTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA 420
           + GL++FDQMY VY V+PQFEHYACVVDLMARAGMVEDAE+F+E+KMGGFSNVDANVWGA
Sbjct: 361 ERGLELFDQMYPVYWVQPQFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGA 420

Query: 421 MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS 480
           +L ACRKY NIE+G+RIW KL A+GV D GTQVLSYNI++EAG EMAAKEVRK  SE RS
Sbjct: 421 ILSACRKYRNIEIGDRIWTKLSALGVLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARS 480

Query: 481 KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETL 528
           KK PGCSV+EVDGAVQEFLAGDLSHPQVQ ICEMLG LS+MVKWET+
Sbjct: 481 KKIPGCSVIEVDGAVQEFLAGDLSHPQVQHICEMLGFLSKMVKWETV 527

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BLAST of Carg23198-RA vs. TAIR10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 285.4 bits (729), Expect = 7.8e-77
Identity = 206/533 (38.65%), Postives = 307/533 (57.60%), Query Frame = 0


Query: 5   SFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFFSYAC 64
           S   ++ P I+  ++++ L +IH   +K+         A +L   ATS D       YA 
Sbjct: 21  SHPSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATS-DLHHRDLDYAH 80

Query: 65  AIFKNLRHRNTFMYNSMIRGYVLSRAPKQAI---LCYLALIDQGLFANNYTFPPLIKACA 124
            IF  +  RN F +N++IRG+  S   K  I   L Y  + D+ +  N +TFP ++KACA
Sbjct: 81  KIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACA 140

Query: 125 LVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLID-LKVARVLFDKSSVK----- 184
              +   + G  +H   +  G+  D FV+S LV  Y +   +K ARVLF K+ ++     
Sbjct: 141 --KTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV 200

Query: 185 ---------DVVVWTAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 244
                    ++V+W  M+DGY ++           XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 201 MTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDXXXXXXXXXXXXXXXXXXXXXXXXX 260

Query: 245 XXXXXXXXXXXXXKPNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVD 304
           XXXXXXXXXX   +PN    VSVL A + LG++  G W+H YA+      + +L +AL+D
Sbjct: 261 XXXXXXXXXXGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALID 320

Query: 305 MYSKCGYIESALAVFEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETT 364
           MYSKCG IE A+ VFE +P ++   W+AMI+G A++G    +++ F KM   G + ++  
Sbjct: 321 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 380

Query: 365 FVAVLAACTHAKMVDTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKK 424
           ++ +L AC+H  +V+ G + F QM +V G+ P+ EHY C+VDL+ R+G++++AEEFI   
Sbjct: 381 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI--- 440

Query: 425 MGGFSNVDANVWGAMLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEM 484
           +      D  +W A+LGACR  GN+E+G R+   L+ M   D G  V   N+YA  G   
Sbjct: 441 LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 500

Query: 485 AAKEVRKNLSETRSKKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLS 520
              E+R  + E   +K PGCS++++DG + EF+  D SHP+ ++I  ML  +S
Sbjct: 501 EVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEIS 547

[Close]

BLAST of Carg23198-RA vs. TAIR10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 276.2 bits (705), Expect = 4.7e-74
Identity = 211/502 (42.03%), Postives = 301/502 (59.96%), Query Frame = 0


Query: 14  IHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFFSYACAIFKNLRHR 73
           + +    + LK+IH  +LKT L +  Y +   L+   +S  +D  F  YA  +F      
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSD--FLPYAQIVFDGFDRP 80

Query: 74  NTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKACA--LVYSELKRVG 133
           +TF++N MIRG+  S  P++++L Y  ++      N YTFP L+KAC+    + E  +  
Sbjct: 81  DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ-- 140

Query: 134 YLVHAHVIVLGYENDPFVVSTLVEFYSLI-DLKVARVLFDKSSVKDVVVWTAMVDGYGKV 193
             +HA +  LGYEND + V++L+  Y++  + K+A +LFD+                   
Sbjct: 141 --IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPXXXXXXXXXXXXXXX 200

Query: 194 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNESITVSVL 253
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +P+     + L
Sbjct: 201 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPDNVSLANAL 260

Query: 254 TACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAVFEGIPNKDAG 313
           +ACA LGA+ QG W+HSY  + R   + +L   L+DMY+KCG +E AL VF+ I  K   
Sbjct: 261 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 320

Query: 314 AWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMVDTGLKIFDQM 373
           AW A+ISG A +G   +++  F +M   G +    TF AVL AC++  +V+ G  IF  M
Sbjct: 321 AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 380

Query: 374 YTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGAMLGACRKYGN 433
              Y ++P  EHY C+VDL+ RAG++++A+ FI++        +A +WGA+L ACR + N
Sbjct: 381 ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMP---LKPNAVIWGALLKACRIHKN 440

Query: 434 IEVGNRIWRKLLAMGVTDCGTQVLSYNIYA-EAGWEMAAKEVRKNLSETRSKKTPGCSVL 493
           IE+G  I   L+A+     G  V   NI+A +  W+ AA E R+ + E    K PGCS +
Sbjct: 441 IELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAA-ETRRLMKEQGVAKVPGCSTI 500

Query: 494 EVDGAVQEFLAGDLSHPQVQDI 512
            ++G   EFLAGD SHP+++ I
Sbjct: 501 SLEGTTHEFLAGDRSHPEIEKI 512

[Close]

BLAST of Carg23198-RA vs. TAIR10
Match: AT5G59200.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 265.4 bits (677), Expect = 8.3e-71
Identity = 204/522 (39.08%), Postives = 309/522 (59.20%), Query Frame = 0


Query: 5   SFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFFSYAC 64
           S +  +  ++   K++ H+  IH  +++T   +  + V  L+ V +T    D     YA 
Sbjct: 27  SRRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVD-----YAY 86

Query: 65  AIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKACALVY 124
            +F  + + N ++Y +MI G+V S      +  Y  +I   +  +NY    ++KAC L  
Sbjct: 87  DVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDL-- 146

Query: 125 SELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLI-DLKVARVLFDKSSVKDVVVWTAM 184
               +V   +HA V+ LG+ +   V   ++E Y    +L  A+ +FD+   +D V  T  
Sbjct: 147 ----KVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATXX 206

Query: 185 VDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNE 244
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NE
Sbjct: 207 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSANE 266

Query: 245 SITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAVFEG 304
              V VL+AC+ LGA+  G W+HS+ +  R E +  +  AL++MYS+CG I  A  VF  
Sbjct: 267 FTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRV 326

Query: 305 IPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMVDTG 364
           + +KD  ++N MISG+AM+G   +++  F  M+  G +  + T VA+L AC+H  ++D G
Sbjct: 327 MRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIG 386

Query: 365 LKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGAMLG 424
           L++F+ M  V+ V PQ EHY C+VDL+ R G +E+A  FIE         D  + G +L 
Sbjct: 387 LEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIP---IEPDHIMLGTLLS 446

Query: 425 ACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRSKKT 484
           AC+ +GN+E+G +I ++L      D GT VL  N+YA +G    + E+R+++ ++  +K 
Sbjct: 447 ACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKE 506

Query: 485 PGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWE 526
           PGCS +EVD  + EFL GD++HP  + I + L  L+R+++++
Sbjct: 507 PGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQELNRILRFK 534

[Close]

BLAST of Carg23198-RA vs. TAIR10
Match: AT5G06540.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 258.8 bits (660), Expect = 7.8e-69
Identity = 211/526 (40.11%), Postives = 306/526 (58.17%), Query Frame = 0


Query: 6   FKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAA--TSGDNDGSFFSYA 65
           FK     L+    S   LK IHG LL+THL    +  + LLA+    ++ +   +   YA
Sbjct: 11  FKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYA 70

Query: 66  CAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKACALV 125
             IF  +++ N F++N +IR +     P +A   Y  ++   ++ +N TFP LIKA + +
Sbjct: 71  YGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEM 130

Query: 126 YSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLID-LKVARVLFDKSSVKDVVVWTA 185
             E   VG   H+ ++  G++ND +V ++LV  Y+    +  A  +F +   +       
Sbjct: 131 --ECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRXXXXXXX 190

Query: 186 MVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPN 245
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    N
Sbjct: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVAN 250

Query: 246 ESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAVFE 305
           E++ VSV+++CAHLGA+  G   + Y  +     N IL TALVDM+ +CG IE A+ VFE
Sbjct: 251 ETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFE 310

Query: 306 GIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMVDT 365
           G+P  D+ +W+++I G+A++G   K++  F +MI  G    + TF AVL+AC+H  +V+ 
Sbjct: 311 GLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEK 370

Query: 366 GLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGAML 425
           GL+I++ M   +G+ P+ EHY C+VD++ RAG + +AE FI K        +A + GA+L
Sbjct: 371 GLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKM---HVKPNAPILGALL 430

Query: 426 GACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRSKK 485
           GAC+ Y N EV  R+   L+ +     G  VL  NIYA AG     + +R  + E   KK
Sbjct: 431 GACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKK 490

Query: 486 TPGCSVLEVDGAVQEFLAG-DLSHPQVQDICEMLGSLSRMVKWETL 528
            PG S++E+DG + +F  G D  HP+       +G + R  KWE +
Sbjct: 491 PPGWSLIEIDGKINKFTMGDDQKHPE-------MGKIRR--KWEEI 522

[Close]

BLAST of Carg23198-RA vs. TAIR10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 255.4 bits (651), Expect = 8.6e-68
Identity = 180/616 (29.22%), Postives = 273/616 (44.32%), Query Frame = 0


Query: 13  LIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFFSYACAIFKNLRH 72
           L+H  K+LQ L+ IH  ++K  L  + Y ++ L+     S   +G    YA ++FK ++ 
Sbjct: 39  LLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEG--LPYAISVFKTIQE 98

Query: 73  RNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKACALVYSELKRVGY 132
            N  ++N+M RG+ LS  P  A+  Y+ +I  GL  N+YTFP ++K+CA   S+  + G 
Sbjct: 99  PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCA--KSKAFKEGQ 158

Query: 133 LVHAHVIVLGYENDPFVVSTLVEFYSLID-LKVARVLFDKSS------------------ 192
            +H HV+ LG + D +V ++L+  Y     L+ A  +FDKS                   
Sbjct: 159 QIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRXXXXXXXXXXXXXXXX 218

Query: 193 ------------------------------------------------------------ 252
                                                                       
Sbjct: 219 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVRPDESTMVTVVS 278

Query: 253 ----------VKDVVVW-------------TAMVDGYGKVXXXXXXXXXXXXXXXXXXXX 312
                      + V +W              A++D Y K                     
Sbjct: 279 ACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS 338

Query: 313 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNESITVSVLTACAHLGAITQGLWMHSYA- 372
                                         PN+   +S+L ACAHLGAI  G W+H Y  
Sbjct: 339 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 398

Query: 373 KRHRWESN-PILATALVDMYSKCGYIESALAVFEGIPNKDAGAWNAMISGVAMNGDVTKS 432
           KR +  +N   L T+L+DMY+KCG IE+A  VF  I +K   +WNAMI G AM+G    S
Sbjct: 399 KRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAS 458

Query: 433 LELFDKMILNGTQATETTFVAVLAACTHAKMVDTGLKIFDQMYTVYGVRPQFEHYACVVD 492
            +LF +M   G Q  + TFV +L+AC+H+ M+D G  IF  M   Y + P+ EHY C++D
Sbjct: 459 FDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMID 518

Query: 493 LMARAGMVEDAEEFIEKKMGGFSNVDANVWGAMLGACRKYGNIEVGNRIWRKLLAMGVTD 524
           L+  +G+ ++AEE I          D  +W ++L AC+ +GN+E+G      L+ +   +
Sbjct: 519 LLGHSGLFKEAEEMINMME---MEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPEN 578

[Close]

BLAST of Carg23198-RA vs. Swiss-Prot
Match: sp|Q9FI80|PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-75
Identity = 206/533 (38.65%), Postives = 307/533 (57.60%), Query Frame = 0


Query: 5   SFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFFSYAC 64
           S   ++ P I+  ++++ L +IH   +K+         A +L   ATS D       YA 
Sbjct: 21  SHPSSLFPQINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATS-DLHHRDLDYAH 80

Query: 65  AIFKNLRHRNTFMYNSMIRGYVLSRAPKQAI---LCYLALIDQGLFANNYTFPPLIKACA 124
            IF  +  RN F +N++IRG+  S   K  I   L Y  + D+ +  N +TFP ++KACA
Sbjct: 81  KIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACA 140

Query: 125 LVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLID-LKVARVLFDKSSVK----- 184
              +   + G  +H   +  G+  D FV+S LV  Y +   +K ARVLF K+ ++     
Sbjct: 141 --KTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV 200

Query: 185 ---------DVVVWTAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 244
                    ++V+W  M+DGY ++           XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 201 MTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDXXXXXXXXXXXXXXXXXXXXXXXXX 260

Query: 245 XXXXXXXXXXXXXKPNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVD 304
           XXXXXXXXXX   +PN    VSVL A + LG++  G W+H YA+      + +L +AL+D
Sbjct: 261 XXXXXXXXXXGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALID 320

Query: 305 MYSKCGYIESALAVFEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETT 364
           MYSKCG IE A+ VFE +P ++   W+AMI+G A++G    +++ F KM   G + ++  
Sbjct: 321 MYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 380

Query: 365 FVAVLAACTHAKMVDTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKK 424
           ++ +L AC+H  +V+ G + F QM +V G+ P+ EHY C+VDL+ R+G++++AEEFI   
Sbjct: 381 YINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI--- 440

Query: 425 MGGFSNVDANVWGAMLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEM 484
           +      D  +W A+LGACR  GN+E+G R+   L+ M   D G  V   N+YA  G   
Sbjct: 441 LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 500

Query: 485 AAKEVRKNLSETRSKKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLS 520
              E+R  + E   +K PGCS++++DG + EF+  D SHP+ ++I  ML  +S
Sbjct: 501 EVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEIS 547

[Close]

BLAST of Carg23198-RA vs. Swiss-Prot
Match: sp|Q9FJY7|PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.5e-73
Identity = 211/502 (42.03%), Postives = 301/502 (59.96%), Query Frame = 0


Query: 14  IHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFFSYACAIFKNLRHR 73
           + +    + LK+IH  +LKT L +  Y +   L+   +S  +D  F  YA  +F      
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSD--FLPYAQIVFDGFDRP 80

Query: 74  NTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKACA--LVYSELKRVG 133
           +TF++N MIRG+  S  P++++L Y  ++      N YTFP L+KAC+    + E  +  
Sbjct: 81  DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ-- 140

Query: 134 YLVHAHVIVLGYENDPFVVSTLVEFYSLI-DLKVARVLFDKSSVKDVVVWTAMVDGYGKV 193
             +HA +  LGYEND + V++L+  Y++  + K+A +LFD+                   
Sbjct: 141 --IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPXXXXXXXXXXXXXXX 200

Query: 194 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNESITVSVL 253
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +P+     + L
Sbjct: 201 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPDNVSLANAL 260

Query: 254 TACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAVFEGIPNKDAG 313
           +ACA LGA+ QG W+HSY  + R   + +L   L+DMY+KCG +E AL VF+ I  K   
Sbjct: 261 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 320

Query: 314 AWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMVDTGLKIFDQM 373
           AW A+ISG A +G   +++  F +M   G +    TF AVL AC++  +V+ G  IF  M
Sbjct: 321 AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 380

Query: 374 YTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGAMLGACRKYGN 433
              Y ++P  EHY C+VDL+ RAG++++A+ FI++        +A +WGA+L ACR + N
Sbjct: 381 ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMP---LKPNAVIWGALLKACRIHKN 440

Query: 434 IEVGNRIWRKLLAMGVTDCGTQVLSYNIYA-EAGWEMAAKEVRKNLSETRSKKTPGCSVL 493
           IE+G  I   L+A+     G  V   NI+A +  W+ AA E R+ + E    K PGCS +
Sbjct: 441 IELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAA-ETRRLMKEQGVAKVPGCSTI 500

Query: 494 EVDGAVQEFLAGDLSHPQVQDI 512
            ++G   EFLAGD SHP+++ I
Sbjct: 501 SLEGTTHEFLAGDRSHPEIEKI 512

[Close]

BLAST of Carg23198-RA vs. Swiss-Prot
Match: sp|Q9FIF7|PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E41 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-69
Identity = 204/522 (39.08%), Postives = 309/522 (59.20%), Query Frame = 0


Query: 5   SFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFFSYAC 64
           S +  +  ++   K++ H+  IH  +++T   +  + V  L+ V +T    D     YA 
Sbjct: 27  SRRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVD-----YAY 86

Query: 65  AIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKACALVY 124
            +F  + + N ++Y +MI G+V S      +  Y  +I   +  +NY    ++KAC L  
Sbjct: 87  DVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDL-- 146

Query: 125 SELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLI-DLKVARVLFDKSSVKDVVVWTAM 184
               +V   +HA V+ LG+ +   V   ++E Y    +L  A+ +FD+   +D V  T  
Sbjct: 147 ----KVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATXX 206

Query: 185 VDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNE 244
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NE
Sbjct: 207 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSANE 266

Query: 245 SITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAVFEG 304
              V VL+AC+ LGA+  G W+HS+ +  R E +  +  AL++MYS+CG I  A  VF  
Sbjct: 267 FTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRV 326

Query: 305 IPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMVDTG 364
           + +KD  ++N MISG+AM+G   +++  F  M+  G +  + T VA+L AC+H  ++D G
Sbjct: 327 MRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIG 386

Query: 365 LKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGAMLG 424
           L++F+ M  V+ V PQ EHY C+VDL+ R G +E+A  FIE         D  + G +L 
Sbjct: 387 LEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIP---IEPDHIMLGTLLS 446

Query: 425 ACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRSKKT 484
           AC+ +GN+E+G +I ++L      D GT VL  N+YA +G    + E+R+++ ++  +K 
Sbjct: 447 ACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKE 506

Query: 485 PGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWE 526
           PGCS +EVD  + EFL GD++HP  + I + L  L+R+++++
Sbjct: 507 PGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQELNRILRFK 534

[Close]

BLAST of Carg23198-RA vs. Swiss-Prot
Match: sp|Q9FG16|PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-67
Identity = 211/526 (40.11%), Postives = 306/526 (58.17%), Query Frame = 0


Query: 6   FKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAA--TSGDNDGSFFSYA 65
           FK     L+    S   LK IHG LL+THL    +  + LLA+    ++ +   +   YA
Sbjct: 11  FKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYA 70

Query: 66  CAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKACALV 125
             IF  +++ N F++N +IR +     P +A   Y  ++   ++ +N TFP LIKA + +
Sbjct: 71  YGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEM 130

Query: 126 YSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLID-LKVARVLFDKSSVKDVVVWTA 185
             E   VG   H+ ++  G++ND +V ++LV  Y+    +  A  +F +   +       
Sbjct: 131 --ECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRXXXXXXX 190

Query: 186 MVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPN 245
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    N
Sbjct: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVAN 250

Query: 246 ESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAVFE 305
           E++ VSV+++CAHLGA+  G   + Y  +     N IL TALVDM+ +CG IE A+ VFE
Sbjct: 251 ETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFE 310

Query: 306 GIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMVDT 365
           G+P  D+ +W+++I G+A++G   K++  F +MI  G    + TF AVL+AC+H  +V+ 
Sbjct: 311 GLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEK 370

Query: 366 GLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGAML 425
           GL+I++ M   +G+ P+ EHY C+VD++ RAG + +AE FI K        +A + GA+L
Sbjct: 371 GLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKM---HVKPNAPILGALL 430

Query: 426 GACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRSKK 485
           GAC+ Y N EV  R+   L+ +     G  VL  NIYA AG     + +R  + E   KK
Sbjct: 431 GACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKK 490

Query: 486 TPGCSVLEVDGAVQEFLAG-DLSHPQVQDICEMLGSLSRMVKWETL 528
            PG S++E+DG + +F  G D  HP+       +G + R  KWE +
Sbjct: 491 PPGWSLIEIDGKINKFTMGDDQKHPE-------MGKIRR--KWEEI 522

[Close]

BLAST of Carg23198-RA vs. Swiss-Prot
Match: sp|Q9LN01|PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.6e-66
Identity = 180/616 (29.22%), Postives = 273/616 (44.32%), Query Frame = 0


Query: 13  LIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFFSYACAIFKNLRH 72
           L+H  K+LQ L+ IH  ++K  L  + Y ++ L+     S   +G    YA ++FK ++ 
Sbjct: 39  LLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEG--LPYAISVFKTIQE 98

Query: 73  RNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKACALVYSELKRVGY 132
            N  ++N+M RG+ LS  P  A+  Y+ +I  GL  N+YTFP ++K+CA   S+  + G 
Sbjct: 99  PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCA--KSKAFKEGQ 158

Query: 133 LVHAHVIVLGYENDPFVVSTLVEFYSLID-LKVARVLFDKSS------------------ 192
            +H HV+ LG + D +V ++L+  Y     L+ A  +FDKS                   
Sbjct: 159 QIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRXXXXXXXXXXXXXXXX 218

Query: 193 ------------------------------------------------------------ 252
                                                                       
Sbjct: 219 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTNVRPDESTMVTVVS 278

Query: 253 ----------VKDVVVW-------------TAMVDGYGKVXXXXXXXXXXXXXXXXXXXX 312
                      + V +W              A++D Y K                     
Sbjct: 279 ACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS 338

Query: 313 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNESITVSVLTACAHLGAITQGLWMHSYA- 372
                                         PN+   +S+L ACAHLGAI  G W+H Y  
Sbjct: 339 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 398

Query: 373 KRHRWESN-PILATALVDMYSKCGYIESALAVFEGIPNKDAGAWNAMISGVAMNGDVTKS 432
           KR +  +N   L T+L+DMY+KCG IE+A  VF  I +K   +WNAMI G AM+G    S
Sbjct: 399 KRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAS 458

Query: 433 LELFDKMILNGTQATETTFVAVLAACTHAKMVDTGLKIFDQMYTVYGVRPQFEHYACVVD 492
            +LF +M   G Q  + TFV +L+AC+H+ M+D G  IF  M   Y + P+ EHY C++D
Sbjct: 459 FDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMID 518

Query: 493 LMARAGMVEDAEEFIEKKMGGFSNVDANVWGAMLGACRKYGNIEVGNRIWRKLLAMGVTD 524
           L+  +G+ ++AEE I          D  +W ++L AC+ +GN+E+G      L+ +   +
Sbjct: 519 LLGHSGLFKEAEEMINMME---MEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPEN 578

[Close]

BLAST of Carg23198-RA vs. TrEMBL
Match: tr|A0A1S3ATN3|A0A1S3ATN3_CUCME (pentatricopeptide repeat-containing protein At5g66520-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482605 PE=4 SV=1)

HSP 1 Score: 776.9 bits (2005), Expect = 3.1e-221
Identity = 437/527 (82.92%), Postives = 476/527 (90.32%), Query Frame = 0


Query: 1   MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF 60
           MIH++F DAI+PL+ K KS+QHLK+IH HLLKT+LP++PY ++PLL VAATSG +  SFF
Sbjct: 1   MIHQTFNDAISPLLRKCKSVQHLKQIHAHLLKTYLPQNPYAISPLLEVAATSGCDGDSFF 60

Query: 61  SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKAC 120
           SYAC IFKNL+ RN FMYNSMIRGY LSR PKQAILCYL LID G  AN YTFPPLIKAC
Sbjct: 61  SYACRIFKNLQQRNIFMYNSMIRGYFLSRFPKQAILCYLDLIDHGFLANKYTFPPLIKAC 120

Query: 121 ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW 180
           ALVY ELKR+GYLVHAHV+VLGYEND FVVS LVEFYSL DLKVARVLFDKSS KDVVVW
Sbjct: 121 ALVYRELKRIGYLVHAHVVVLGYENDAFVVSALVEFYSLFDLKVARVLFDKSSAKDVVVW 180

Query: 181 TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240
           T MVDGYGK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK
Sbjct: 181 TVMVDGYGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240

Query: 241 PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV 300
           PN+S+ VSVLTACAHLGAITQGLWMHSYAKR+  ++NPILATALVDMYSKCGYIESAL V
Sbjct: 241 PNDSVIVSVLTACAHLGAITQGLWMHSYAKRYGLDANPILATALVDMYSKCGYIESALEV 300

Query: 301 FEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV 360
           FEGI NKDAGAWNAMISGVAM GDV KSLELFDKMI +GTQATE TFV++LAACTHAKMV
Sbjct: 301 FEGISNKDAGAWNAMISGVAMTGDVMKSLELFDKMIASGTQATEATFVSILAACTHAKMV 360

Query: 361 DTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA 420
           + GL++FDQMY VY V+PQFEHYACVVDLMARAGMVEDAE+F+E+KMGGFSNVDANVWGA
Sbjct: 361 ERGLELFDQMYPVYWVQPQFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGA 420

Query: 421 MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS 480
           +L ACRKY NIE+G+RIW KL A+GV D GTQVLSYNI++EAG EMAAKEVRK  SE RS
Sbjct: 421 ILSACRKYRNIEIGDRIWTKLSALGVLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARS 480

Query: 481 KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETL 528
           KK PGCSV+EVDGAVQEFLAGDLSHPQVQ ICEMLG LS+MVKWET+
Sbjct: 481 KKIPGCSVIEVDGAVQEFLAGDLSHPQVQHICEMLGFLSKMVKWETV 527

[Close]

BLAST of Carg23198-RA vs. TrEMBL
Match: tr|A0A0A0KMY1|A0A0A0KMY1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162080 PE=4 SV=1)

HSP 1 Score: 749.6 bits (1934), Expect = 5.3e-213
Identity = 428/527 (81.21%), Postives = 466/527 (88.43%), Query Frame = 0


Query: 1   MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF 60
           MIH++F +AI+PL+ K KS+QHLK+IH HLLKT+L +SPY +APLL VAATSG +  SFF
Sbjct: 1   MIHQTFNNAISPLLRKCKSVQHLKQIHAHLLKTYLSQSPYAIAPLLEVAATSGCDRDSFF 60

Query: 61  SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKAC 120
           SYAC IFKNL+ RN FMYNSMIRGY LSR PKQAILCYL L+D+G  AN YTFPPLIKAC
Sbjct: 61  SYACGIFKNLQQRNIFMYNSMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKAC 120

Query: 121 ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW 180
           ALVY ELKR+GYLVHAHVIVLGYEND FVVS LVEFYSL DLKVARVLFDKSS KDVVVW
Sbjct: 121 ALVYRELKRIGYLVHAHVIVLGYENDAFVVSALVEFYSLFDLKVARVLFDKSSGKDVVVW 180

Query: 181 TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240
           T MVDGYGK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 181 TVMVDGYGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV 300
                  SVLTACAHLGAITQGLWMHSYAKR+  +SNPILATALVDMYSKCGYIESAL V
Sbjct: 241 XXXXXXXSVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEV 300

Query: 301 FEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV 360
           FEGI NKDAGAWNAMISG AM G+V KSLELFDKMI +GTQATE TFV++LAACTHAKMV
Sbjct: 301 FEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFVSILAACTHAKMV 360

Query: 361 DTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA 420
           + GL+ FDQMY VY V+PQFEHYACVVDLMARAGMVEDAE+F+E+KMGGFSNVDANVWGA
Sbjct: 361 ERGLEFFDQMYPVYRVQPQFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGA 420

Query: 421 MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRS 480
           +L ACR+Y NIE+G+RIW KL A+G+ D GTQVLSYNI++EAG EMAAKEVRK  SE RS
Sbjct: 421 ILSACRQYRNIEIGDRIWTKLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARS 480

Query: 481 KKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWETL 528
           KK PGCSV+ VDGAVQEFLAGDLSHPQVQ ICEMLG LS+MVKWET+
Sbjct: 481 KKIPGCSVIVVDGAVQEFLAGDLSHPQVQHICEMLGFLSKMVKWETV 527

[Close]

BLAST of Carg23198-RA vs. TrEMBL
Match: tr|A0A1S3ASS3|A0A1S3ASS3_CUCME (pentatricopeptide repeat-containing protein At5g66520-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482605 PE=4 SV=1)

HSP 1 Score: 679.5 bits (1752), Expect = 6.7e-192
Identity = 389/470 (82.77%), Postives = 425/470 (90.43%), Query Frame = 0


Query: 1   MIHKSFKDAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFF 60
           MIH++F DAI+PL+ K KS+QHLK+IH HLLKT+LP++PY ++PLL VAATSG +  SFF
Sbjct: 1   MIHQTFNDAISPLLRKCKSVQHLKQIHAHLLKTYLPQNPYAISPLLEVAATSGCDGDSFF 60

Query: 61  SYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKAC 120
           SYAC IFKNL+ RN FMYNSMIRGY LSR PKQAILCYL LID G  AN YTFPPLIKAC
Sbjct: 61  SYACRIFKNLQQRNIFMYNSMIRGYFLSRFPKQAILCYLDLIDHGFLANKYTFPPLIKAC 120

Query: 121 ALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLIDLKVARVLFDKSSVKDVVVW 180
           ALVY ELKR+GYLVHAHV+VLGYEND FVVS LVEFYSL DLKVARVLFDKSS KDVVVW
Sbjct: 121 ALVYRELKRIGYLVHAHVVVLGYENDAFVVSALVEFYSLFDLKVARVLFDKSSAKDVVVW 180

Query: 181 TAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240
           T MVDGYGK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK
Sbjct: 181 TVMVDGYGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK 240

Query: 241 PNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAV 300
           PN+S+ VSVLTACAHLGAITQGLWMHSYAKR+  ++NPILATALVDMYSKCGYIESAL V
Sbjct: 241 PNDSVIVSVLTACAHLGAITQGLWMHSYAKRYGLDANPILATALVDMYSKCGYIESALEV 300

Query: 301 FEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMV 360
           FEGI NKDAGAWNAMISGVAM GDV KSLELFDKMI +GTQATE TFV++LAACTHAKMV
Sbjct: 301 FEGISNKDAGAWNAMISGVAMTGDVMKSLELFDKMIASGTQATEATFVSILAACTHAKMV 360

Query: 361 DTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGA 420
           + GL++FDQMY VY V+PQFEHYACVVDLMARAGMVEDAE+F+E+KMGGFSNVDANVWGA
Sbjct: 361 ERGLELFDQMYPVYWVQPQFEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGA 420

Query: 421 MLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKE 471
           +L ACRKY NIE+G+RIW KL A+GV D GTQVLSYNI++EAG EMAAKE
Sbjct: 421 ILSACRKYRNIEIGDRIWTKLSALGVLDGGTQVLSYNIFSEAGREMAAKE 470

[Close]

BLAST of Carg23198-RA vs. TrEMBL
Match: tr|A0A2I4GTJ2|A0A2I4GTJ2_9ROSI (pentatricopeptide repeat-containing protein At5g66520-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109010759 PE=4 SV=1)

HSP 1 Score: 602.1 bits (1551), Expect = 1.4e-168
Identity = 349/527 (66.22%), Postives = 420/527 (79.70%), Query Frame = 0


Query: 1   MIHKSFK-DAIAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSF 60
           MI K+ + +A+  L  K K+L  LK+IH HLLK+HLP +PY +APLL++AATS  ND SF
Sbjct: 1   MIQKTVENNALVSLSQKCKTLNQLKQIHAHLLKSHLPVNPYAIAPLLSIAATS--NDASF 60

Query: 61  FSYACAIFKNLRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKA 120
            SYA ++F++ RHRN F+YN+MIRG+  S +P +AILCY  +++ GL  NNYTFPPLIKA
Sbjct: 61  LSYARSVFEHFRHRNIFLYNTMIRGHAQSHSPVRAILCYFGMLNYGLVPNNYTFPPLIKA 120

Query: 121 CALVYSELKRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLI-DLKVARVLFDKSSVKDVV 180
           C       K +G LVHAH++  G+ +DPFVVS L+E+YS+  D+  AR+LFD +  KDVV
Sbjct: 121 CTFSVPSSKLIGRLVHAHIVTFGFSDDPFVVSALIEYYSVAQDMGTARLLFDITPKKDVV 180

Query: 181 VWTAMVDGYGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XKPNESITVSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESAL 300
           X  NES+ VSVLTACAHLGA+TQGLW+HSY KRH  ESNPILATALVDMYSKCG +ESAL
Sbjct: 241 XXXNESVLVSVLTACAHLGAVTQGLWIHSYTKRHNLESNPILATALVDMYSKCGCVESAL 300

Query: 301 AVFEGIPNKDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAK 360
            VF  IP KDAGAWNAMISGVAMNGD  KSL+LF +MI  GTQ T+TTFVAVL ACTHAK
Sbjct: 301 LVFNTIPKKDAGAWNAMISGVAMNGDAMKSLDLFGEMITTGTQPTDTTFVAVLTACTHAK 360

Query: 361 MVDTGLKIFDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVW 420
           MVD GLK+F++M T+YG+ P+ EHYACVVDL+ARAGM+E+AE FIE+KMGGFS  DAN+W
Sbjct: 361 MVDQGLKLFERMDTIYGIVPKLEHYACVVDLLARAGMLEEAERFIEEKMGGFSRGDANIW 420

Query: 421 GAMLGACRKYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSET 480
           GA+  ACR YGN+E+GNR+W+KL+ +GV D GT VLSYN+Y EAGWEM AK+VRK +S++
Sbjct: 421 GALQSACRIYGNVEIGNRVWKKLIDIGVVDSGTSVLSYNMYREAGWEMDAKKVRKTISDS 480

Query: 481 RSKKTPGCSVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWE 526
           R KK PGCSV+EV G V+EFLAGDL H Q Q+IC+ L SLS+++  E
Sbjct: 481 RLKKKPGCSVIEVSGKVEEFLAGDLCHSQAQEICKTLDSLSKIINLE 525

[Close]

BLAST of Carg23198-RA vs. TrEMBL
Match: tr|A0A2P5ETW1|A0A2P5ETW1_9ROSA (Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_152170 PE=4 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.1e-161
Identity = 339/519 (65.32%), Postives = 415/519 (79.96%), Query Frame = 0


Query: 10  IAPLIHKSKSLQHLKEIHGHLLKTHLPESPYGVAPLLAVAATSGDNDGSFFSYACAIFKN 69
           I  L  K K+L+ LK+IH H+LK+  PE+P+ V P+L+ AATSG  DGSFFSYA +IF +
Sbjct: 12  IISLSQKCKTLKQLKQIHAHVLKSSSPENPFPVGPVLSAAATSG--DGSFFSYARSIFDH 71

Query: 70  LRHRNTFMYNSMIRGYVLSRAPKQAILCYLALIDQGLFANNYTFPPLIKACALVY--SEL 129
           LRHRN FMYNSMIRGYV + +P  ++LCYL ++D GL AN+YTFPPL+KAC ++   S  
Sbjct: 72  LRHRNVFMYNSMIRGYVRTSSPLDSVLCYLDMLDYGLAANHYTFPPLMKACTILVPGSTK 131

Query: 130 KRVGYLVHAHVIVLGYENDPFVVSTLVEFYSLI-DLKVARVLFDKSSVKDVVVWTAMVDG 189
             +G LVHAHV+  G+ +DPFV S L+EFYS + ++   R+LFD    KDVV+       
Sbjct: 132 LIIGRLVHAHVVKFGFRDDPFVNSALIEFYSSVCEMGTGRLLFDNCHKKDVVLXXXXXXX 191

Query: 190 YGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNESIT 249
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNE++ 
Sbjct: 192 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNEAVL 251

Query: 250 VSVLTACAHLGAITQGLWMHSYAKRHRWESNPILATALVDMYSKCGYIESALAVFEGIPN 309
           VSVLTACAHLGA+ QG+W+HSYAKR++ ++NPILATALVDMYSKCG++ESALAVFEGI N
Sbjct: 252 VSVLTACAHLGAVMQGIWVHSYAKRNKLDANPILATALVDMYSKCGFLESALAVFEGIVN 311

Query: 310 KDAGAWNAMISGVAMNGDVTKSLELFDKMILNGTQATETTFVAVLAACTHAKMVDTGLKI 369
           KD  AWNAMI+G+++NG+  KSLE FDKM ++  Q TETTF+AVL ACTHAKMV+ GL +
Sbjct: 312 KDVEAWNAMITGLSLNGNARKSLEFFDKMTIDRVQPTETTFIAVLTACTHAKMVNEGLNL 371

Query: 370 FDQMYTVYGVRPQFEHYACVVDLMARAGMVEDAEEFIEKKMGGFSNVDANVWGAMLGACR 429
           FD+M T+YGV+PQ EH+ACVVDL+ARAGMVE+AE+FIE+KMGGF   DANVWGA+LGACR
Sbjct: 372 FDEMGTIYGVKPQREHHACVVDLLARAGMVEEAEKFIEEKMGGFEGWDANVWGALLGACR 431

Query: 430 KYGNIEVGNRIWRKLLAMGVTDCGTQVLSYNIYAEAGWEMAAKEVRKNLSETRSKKTPGC 489
            YG +EVGNR+W+KL  MG+ DCG  VLSYN+Y EAGWEM AK VRK +S++   K PGC
Sbjct: 432 VYGKVEVGNRVWKKLADMGIADCGAHVLSYNMYREAGWEMQAKGVRKMISKSGMLKQPGC 491

Query: 490 SVLEVDGAVQEFLAGDLSHPQVQDICEMLGSLSRMVKWE 526
           SV+EV+G  +EFLAGDL HPQ Q+I ++L S  +MV  E
Sbjct: 492 SVIEVNGVFEEFLAGDLCHPQAQEIFKILDSFFKMVYLE 528

The following BLAST results are available for this feature:

BLAST of Carg23198-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922110.1	4.0e-273	99.62	pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita moschata] ...	[more]
XP_023549650.1	3.5e-269	98.68	pentatricopeptide repeat-containing protein At5g06540-like [Cucurbita pepo subsp...	[more]
XP_022970147.1	1.0e-268	97.92	pentatricopeptide repeat-containing protein At5g48910-like [Cucurbita maxima] >X...	[more]
XP_022154784.1	1.4e-236	87.33	pentatricopeptide repeat-containing protein At5g66520-like [Momordica charantia]	[more]
XP_008437067.1	4.7e-221	82.92	PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like isoform X1...	[more]

BLAST of Carg23198-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48910.1	7.8e-77	38.65	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G66520.1	4.7e-74	42.03	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G59200.1	8.3e-71	39.08	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G06540.1	7.8e-69	40.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G08070.1	8.6e-68	29.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg23198-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FI80\|PP425_ARATH	1.4e-75	38.65	Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9FJY7\|PP449_ARATH	8.5e-73	42.03	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9FIF7\|PP435_ARATH	1.5e-69	39.08	Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS...	[more]
sp\|Q9FG16\|PP367_ARATH	1.4e-67	40.11	Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LN01\|PPR21_ARATH	1.6e-66	29.22	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]

BLAST of Carg23198-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATN3\|A0A1S3ATN3_CUCME	3.1e-221	82.92	pentatricopeptide repeat-containing protein At5g66520-like isoform X1 OS=Cucumis...	[more]
tr\|A0A0A0KMY1\|A0A0A0KMY1_CUCSA	5.3e-213	81.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162080 PE=4 SV=1	[more]
tr\|A0A1S3ASS3\|A0A1S3ASS3_CUCME	6.7e-192	82.77	pentatricopeptide repeat-containing protein At5g66520-like isoform X2 OS=Cucumis...	[more]
tr\|A0A2I4GTJ2\|A0A2I4GTJ2_9ROSI	1.4e-168	66.22	pentatricopeptide repeat-containing protein At5g66520-like isoform X1 OS=Juglans...	[more]
tr\|A0A2P5ETW1\|A0A2P5ETW1_9ROSA	2.1e-161	65.32	Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_152170 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg23198	Carg23198	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg23198-RA	Carg23198-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23198-RA.CDS.3	Carg23198-RA.CDS.3	CDS
Carg23198-RA.CDS.2	Carg23198-RA.CDS.2	CDS
Carg23198-RA.CDS.1	Carg23198-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg23198-RA.exon.3	Carg23198-RA.exon.3	exon
Carg23198-RA.exon.2	Carg23198-RA.exon.2	exon
Carg23198-RA.exon.1	Carg23198-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 154..263 e-value: 1.5E-24 score: 88.3 coord: 18..153 e-value: 3.6E-7 score: 31.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 280..492 e-value: 1.7E-33 score: 118.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 209..243 e-value: 1.3E-8 score: 32.5 coord: 312..340 e-value: 4.7E-5 score: 21.3 coord: 178..206 e-value: 3.5E-7 score: 28.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 311..339 e-value: 8.0E-6 score: 25.7 coord: 282..302 e-value: 0.14 score: 12.4 coord: 76..103 e-value: 0.24 score: 11.7 coord: 178..207 e-value: 6.3E-8 score: 32.3 coord: 209..239 e-value: 1.6E-5 score: 24.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 74..108 score: 7.958
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 176..206 score: 10.753
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 379..410 score: 5.831
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 242..276 score: 5.042
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 414..448 score: 7.98
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 308..342 score: 10.139
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 277..307 score: 7.125
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 343..378 score: 7.004
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 207..241 score: 11.893
None	No IPR available	PANTHER	PTHR24015:SF682	SUBFAMILY NOT NAMED	coord: 44..511
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 44..511