Carg14045 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14045
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein GLUTAMINE DUMPER 3
Location	Cucurbita_argyrosperma_scaffold_097 : 546458 .. 546685 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGTGAAATCAAGCCCACATATTTAGCTACTCCCATGTCAAGCAGGTCCTCTTCTTTTGGGGATGCGAAAAGCAATAGTAGTAGCAGCGCTACGGCCACCGGTGAGAAGGATGAAAAATCAGTGGCCGTAACGGAGACGGTGAAACAGAGCAGTGGAGAAGAGGAGGTGCAGAGTACAGAAAACAGAGAAACTCCTGAATCTTCAGCTCAGACGACCCATTAA

mRNA sequence

ATGGCCGGTGAAATCAAGCCCACATATTTAGCTACTCCCATGTCAAGCAGGTCCTCTTCTTTTGGGGATGCGAAAAGCAATAGTAGTAGCAGCGCTACGGCCACCGGTGAGAAGGATGAAAAATCAGTGGCCGTAACGGAGACGGTGAAACAGAGCAGTGGAGAAGAGGAGGTGCAGAGTACAGAAAACAGAGAAACTCCTGAATCTTCAGCTCAGACGACCCATTAA

Coding sequence (CDS)

ATGGCCGGTGAAATCAAGCCCACATATTTAGCTACTCCCATGTCAAGCAGGTCCTCTTCTTTTGGGGATGCGAAAAGCAATAGTAGTAGCAGCGCTACGGCCACCGGTGAGAAGGATGAAAAATCAGTGGCCGTAACGGAGACGGTGAAACAGAGCAGTGGAGAAGAGGAGGTGCAGAGTACAGAAAACAGAGAAACTCCTGAATCTTCAGCTCAGACGACCCATTAA

Protein sequence

MAGEIKPTYLATPMSSRSSSFGDAKSNSSSSATATGEKDEKSVAVTETVKQSSGEEEVQSTENRETPESSAQTTH

Homology

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BLAST of Carg14045 vs. NCBI nr
Match: XP_022933795.1 (protein GLUTAMINE DUMPER 2-like [Cucurbita moschata])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1   MAGEIKPTYLATPMSSRSSSFGDAKXXXXXXXXXXXXXXXXXXXXXETVKQSSGEEEVQS 60
           MAGEIKPTYLATPMSSRSSSFGDAKXXXXXXXXXXXXXXXXXXXX ETVKQSSGEEEVQS
Sbjct: 98  MAGEIKPTYLATPMSSRSSSFGDAKXXXXXXXXXXXXXXXXXXXXTETVKQSSGEEEVQS 157

Query: 61  TENRETPESSAQTTH 76
           TENRETPESS QTTH
Sbjct: 158 TENRETPESSDQTTH 172

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BLAST of Carg14045 vs. NCBI nr
Match: XP_023532014.1 (protein GLUTAMINE DUMPER 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 7.6e-15
Identity = 60/75 (80.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1   MAGEIKPTYLATPMSSRSSSFGDAKXXXXXXXXXXXXXXXXXXXXXETVKQSSGEEEVQS 60
           MAGEIKPTYLATPMSSRSSSFGDAK  XXXXXXXXX          ETVKQSSG+EEVQS
Sbjct: 98  MAGEIKPTYLATPMSSRSSSFGDAKSNXXXXXXXXXGKDEKSVAVTETVKQSSGDEEVQS 157

Query: 61  TENRETPESSAQTTH 76
           TENRETPESS QT+H
Sbjct: 158 TENRETPESSDQTSH 172

[Close]

BLAST of Carg14045 vs. NCBI nr
Match: XP_022966276.1 (protein GLUTAMINE DUMPER 3-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 7.9e-12
Identity = 67/75 (89.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1   MAGEIKPTYLATPMSSRSSSFGDAKXXXXXXXXXXXXXXXXXXXXXETVKQSSGEEEVQS 60
           MAGEIKPTYLATPMSSRSSSFGD K XXXXXXXXXXXXXXXXXXXX     SSGEEEVQS
Sbjct: 98  MAGEIKPTYLATPMSSRSSSFGDTKSXXXXXXXXXXXXXXXXXXXXXXXXXSSGEEEVQS 157

Query: 61  TENRETPESSAQTTH 76
           TENRETPESS QTTH
Sbjct: 158 TENRETPESSDQTTH 172

[Close]

BLAST of Carg14045 vs. NCBI nr
Match: XP_022988520.1 (protein GLUTAMINE DUMPER 1-like [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 51/75 (68.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1   MAGEIKPTYLATPMSSRSSSFGDAKXXXXXXXXXXXXXXXXXXXXXETVKQSSGEEEVQS 60
           MAGEIKPTYLATPMSSRSSSFGD K        XXXXXXX      ET KQS G +E QS
Sbjct: 108 MAGEIKPTYLATPMSSRSSSFGDTK---SNSSCXXXXXXXADKDEKETAKQSIGNQEAQS 167

Query: 61  TENRETPESSAQTTH 76
            EN+ETPESS QTT+
Sbjct: 168 IENKETPESSDQTTN 179

[Close]

BLAST of Carg14045 vs. NCBI nr
Match: XP_023516470.1 (protein GLUTAMINE DUMPER 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 43/75 (57.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 1   MAGEIKPTYLATPMSSRSSSFGDAKXXXXXXXXXXXXXXXXXXXXXETVKQSSGEEEVQS 60
           MAGEIKPTYLATPMSSRSSSFGD K                     ET +QS G +E QS
Sbjct: 108 MAGEIKPTYLATPMSSRSSSFGDTK------SNSSCSSSATGTADKETAEQSIGNQEAQS 167

Query: 61  TENRETPESSAQTTH 76
            ENR TPESS QTT+
Sbjct: 168 IENRGTPESSDQTTN 176

[Close]

BLAST of Carg14045 vs. TrEMBL
Match: tr|A0A1S3BXP2|A0A1S3BXP2_CUCME (protein GLUTAMINE DUMPER 3 OS=Cucumis melo OX=3656 GN=LOC103494354 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.8e-08
Identity = 42/77 (54.55%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 1   MAGEIKPTYLATPMSSRSSSFGDAK--XXXXXXXXXXXXXXXXXXXXXETVKQSSGEEEV 60
           MAGE+KPTYLATPMSSRSSSFGD K                       ETVK S+     
Sbjct: 55  MAGEMKPTYLATPMSSRSSSFGDTKSNSSCGSKGSSTGDKEEKSVGLTETVKHSTAXXXX 114

Query: 61  QSTENRETPESSAQTTH 76
           QS ENRETPESS  TTH
Sbjct: 115 QSIENRETPESSDPTTH 131

[Close]

BLAST of Carg14045 vs. TrEMBL
Match: tr|A0A0A0LWQ5|A0A0A0LWQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G418800 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-05
Identity = 38/77 (49.35%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 1   MAGEIKPTYLATPMSSRSSSFGDAK--XXXXXXXXXXXXXXXXXXXXXETVKQSSGEEEV 60
           MAGE+KPTYLATPMSSRSSSFGD K                       ETVK S      
Sbjct: 103 MAGEMKPTYLATPMSSRSSSFGDTKSNTSCSSKGSSTGDKEEKSVGLTETVKHSXXXXXX 162

Query: 61  QSTENRETPESSAQTTH 76
              +NRETPESS   TH
Sbjct: 163 XXXDNRETPESSDPMTH 179

The following BLAST results are available for this feature:

BLAST of Carg14045 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933795.1	1.2e-15	97.33	protein GLUTAMINE DUMPER 2-like [Cucurbita moschata]	[more]
XP_023532014.1	7.6e-15	80.00	protein GLUTAMINE DUMPER 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022966276.1	7.9e-12	89.33	protein GLUTAMINE DUMPER 3-like [Cucurbita maxima]	[more]
XP_022988520.1	1.6e-09	68.00	protein GLUTAMINE DUMPER 1-like [Cucurbita maxima]	[more]
XP_023516470.1	1.4e-08	57.33	protein GLUTAMINE DUMPER 2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg14045 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg14045 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14045 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BXP2\|A0A1S3BXP2_CUCME	7.8e-08	54.55	protein GLUTAMINE DUMPER 3 OS=Cucumis melo OX=3656 GN=LOC103494354 PE=4 SV=1	[more]
tr\|A0A0A0LWQ5\|A0A0A0LWQ5_CUCSA	3.6e-05	49.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G418800 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14045-RA	Carg14045-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14045	Cla018795	Watermelon (97103) v1	carwmB0507
Carg14045	MELO3C017503	Melon (DHL92) v3.5.1	carmeB0510
Carg14045	ClCG06G013060	Watermelon (Charleston Gray)	carwcgB0496
Carg14045	CmaCh11G004160	Cucurbita maxima (Rimu)	carcmaB0710
Carg14045	CmoCh11G004150	Cucurbita moschata (Rifu)	carcmoB0689
Carg14045	Lsi06G011070	Bottle gourd (USVL1VR-Ls)	carlsiB463
Carg14045	Cp4.1LG18g05880	Cucurbita pepo (Zucchini)	carcpeB0715
Carg14045	Cp4.1LG04g12780	Cucurbita pepo (Zucchini)	carcpeB0717
Carg14045	MELO3C017503.2	Melon (DHL92) v3.6.1	carmedB0516
Carg14045	Cla97C06G122360	Watermelon (97103) v2	carwmbB0534
Carg14045	Bhi02G000617	Wax gourd	carwgoB0620

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14045	Cucurbita maxima (Rimu)	carcmaB0709
Carg14045	Cucurbita moschata (Rifu)	carcmoB0688
Carg14045	Melon (DHL92) v3.6.1	carmedB0515