Carg18439 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18439
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytochrome-c oxidase/ electron carrier
Location	Cucurbita_argyrosperma_scaffold_161 : 271379 .. 273570 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTCTTCTTCCTCTCACATCGCAGAAGTCATCGTCTATCATTCACGCCCATCAGCGGCACCCTTCGGATCAACGATTTCTCGCTCTCCTGAAAGGTGAAACCTCCAAATTCATGCGAGTTTCAATCCCTTCTCCCATATCTTCTTTAGGATTAAGGTTTAATAGATCTGCTTTGATAGTTTGATATAGGATTTTGTTGTAAGGCTTCATCCATTTGTTTTTTCTGGTTAATCTGCTTCGGGAATGTCGTTGTTTATTATGTATTTCTTCTTGAAATGAATTTTCTCCTTGAATTTTGTTTTGTTTTGTCCAAGGTAATGGTAGTTTCCAATTTCGTGAGCTGTTTTCGGAGATTTAGATTTATATGCTGTTTCCCTATTCGATTGAAATACGCTATACCATTTACTCATTGAATCATCGATCTTGAGATGGGTTCAGTTTGATGGCTATTCAACTTATTTTCGTGTAATTTTAATTTTTGTGCATATTTCCTTGCGTACAATGTGGCAATGAGAATTGCTTTATTCTTCAGCAGCTCGAAGTGAAGAGTAATTGTCATTTTTATCTTTGAGATAGGGCTAGCCTAGCTGAAGCTACTGGGGATAGGGGTTTAGTTTCCTCGACTCATAATCATATATGGGATTTATTGAATTGGTGAATCAGATGTGTGTGTGTGAGAATGGACGGCAGAAGATTAAGAACTGTGCATGGGATGTTCATTTTATCTATGGATCTTCTGTGACCAATGAGTAGTGGGTCTCTGAACTGAGCCTTAGGCTAAAATTTGGAAATCAATGTCATCTGACTGATGGGGATTCCACTGTTTCGAGATAGCAGGCGATTGAGTTTTTATGTTCATCTGTTTTCGGTATCAATGTAATAGCCCAAGCCCACCGCTAGCAGATATTGTCTTCGTTGGACTCTTCCTTTCGGACTTCCCCTCAAGGTTTTAGAACATATCTGCTAGGGAGAGGTTTCCACACCCTTATAAGAAATACTTTATTCTCCTCTTCCACCAATGTGGGATCTCACAATCCACCCTCTTGGGAGCCTAGCGTCCTCGTTGGCATACCGCCTGGCGATTTGCTCTAATACCATTTGTACTAGCTCAAAGCCCACCGCTAGCAGATATTGATCTCTTTGAGTTTTCCCTCAAGGTTTTAAAACGGTTTGCTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCCCTTCCCTTCTCCAACTGATGTGGGATCTCACAACCAATTCTCTAGCCGTAAGCTAATAATCATGCATTTGAAAATTTATTGTTGGATACTTTCTTTTCATACTGTTACTGTCCAATGCTTTAGAATGGATAGATTAAACACTCTCCAGAGTCCTTGGATTTGATTGTTTGTTATACAGAAGAAATGAAACATGTAATCACAGATCTGCAAATTTCACCTATTTTGTATTTGAATTATCATGCAGGATGACTGAACAGCCGTTTAGGCCGCGTGAGAAACTGATTGAAAGGCAAAAGTATTTCCAGAGCATCCAGAAGCACACATATCTTAAAGGGCCATTGGATAAGGTCACCTCTGTTGCCATCCCAATTGCTTTGGCAGCTTCATCCTTGTATCTTATAGTAAGTTAATTGTTGAAGGCTTTCTGAACCATTATGAAACACTTGAAACTAGTTGTATAACATTACAGGATAATGCGGGTCTGCTCCCGTTTCGTGCAGGGACGAGGAATTTATAACATGTCTCATGGGATTGGGAAGAAAGAATGAGGGTGACACAGTCTCTCAGCATCTTAATTGCATAGAGGTTTTTAACTTCTGGACCTATGTTAATTTTGTTATTGAAGAAATGTTTGTCCAATAATTGCTTAGTTGCAGACCTCGGCTACCATTTGATTTGAATATCATTCTCAGATTCCTTGTTGTTTTCCCCACTTTTTTGGAAACTGTGTGCTGGTGCAAATAAGATTTGAGCAACATATCCAGAATAGTTCTTTTTCTTACCGTCTATTGTGAAGTTCGGATGTTTGTACATAAGTTTTATAGAGCCTATGTCAAAATTTAAATTTAATTTTATGTCTAATATATTTTTAATTTTTAATTTTCAATTTAATTTTGTCTAATATATTCGATGGAGAGTAAGCTTCCTATAAAGGAAAATGTCTGGTTTTATGTCTAATATATTCCTAATTTTAAAA

mRNA sequence

CCGTCTTCTTCCTCTCACATCGCAGAAGTCATCGTCTATCATTCACGCCCATCAGCGGCACCCTTCGGATCAACGATTTCTCGCTCTCCTGAAAGGATGACTGAACAGCCGTTTAGGCCGCGTGAGAAACTGATTGAAAGGCAAAAGTATTTCCAGAGCATCCAGAAGCACACATATCTTAAAGGGCCATTGGATAAGGTCACCTCTGTTGCCATCCCAATTGCTTTGGCAGCTTCATCCTTGTATCTTATAGGACGAGGAATTTATAACATGTCTCATGGGATTGGGAAGAAAGAATGAGGGTGACACAGTCTCTCAGCATCTTAATTGCATAGAGGTTTTTAACTTCTGGACCTATGTTAATTTTGTTATTGAAGAAATGTTTGTCCAATAATTGCTTAGTTGCAGACCTCGGCTACCATTTGATTTGAATATCATTCTCAGATTCCTTGTTGTTTTCCCCACTTTTTTGGAAACTGTGTGCTGGTGCAAATAAGATTTGAGCAACATATCCAGAATAGTTCTTTTTCTTACCGTCTATTGTGAAGTTCGGATGTTTGTACATAAGTTTTATAGAGCCTATGTCAAAATTTAAATTTAATTTTATGTCTAATATATTTTTAATTTTTAATTTTCAATTTAATTTTGTCTAATATATTCGATGGAGAGTAAGCTTCCTATAAAGGAAAATGTCTGGTTTTATGTCTAATATATTCCTAATTTTAAAA

Coding sequence (CDS)

ATGACTGAACAGCCGTTTAGGCCGCGTGAGAAACTGATTGAAAGGCAAAAGTATTTCCAGAGCATCCAGAAGCACACATATCTTAAAGGGCCATTGGATAAGGTCACCTCTGTTGCCATCCCAATTGCTTTGGCAGCTTCATCCTTGTATCTTATAGGACGAGGAATTTATAACATGTCTCATGGGATTGGGAAGAAAGAATGA

Protein sequence

MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMSHGIGKKE

Homology

[Close]

BLAST of Carg18439 vs. NCBI nr
Match: XP_022943457.1 (uncharacterized protein LOC111448217 [Cucurbita moschata] >XP_022986051.1 uncharacterized protein LOC111483906 [Cucurbita maxima] >XP_023512094.1 uncharacterized protein LOC111776915 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 8.3e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS
Sbjct: 2  MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS 61

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 62 HGIGKKE 68

[Close]

BLAST of Carg18439 vs. NCBI nr
Match: XP_022957674.1 (uncharacterized protein LOC111459140 isoform X1 [Cucurbita moschata] >XP_022996284.1 uncharacterized protein LOC111491558 isoform X1 [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 7.0e-28
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MTEQPFRPREKLIERQKYFQSI KHTYLKGP+DK+TSVAIPIALAASSLYLIGRGIYNMS
Sbjct: 3  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 63 HGIGKKE 69

[Close]

BLAST of Carg18439 vs. NCBI nr
Match: XP_022957675.1 (uncharacterized protein LOC111459140 isoform X2 [Cucurbita moschata] >XP_022996285.1 uncharacterized protein LOC111491558 isoform X2 [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 7.0e-28
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MTEQPFRPREKLIERQKYFQSI KHTYLKGP+DK+TSVAIPIALAASSLYLIGRGIYNMS
Sbjct: 1  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of Carg18439 vs. NCBI nr
Match: XP_023532621.1 (uncharacterized protein LOC111794729 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-27
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MTEQPFRPREKLIE+QKYFQSI KHTYLKGP+DK+TSVAIPIALAASSLYLIGRGIYNMS
Sbjct: 3  MTEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 63 HGIGKKE 69

[Close]

BLAST of Carg18439 vs. NCBI nr
Match: XP_023532622.1 (uncharacterized protein LOC111794729 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-27
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MTEQPFRPREKLIE+QKYFQSI KHTYLKGP+DK+TSVAIPIALAASSLYLIGRGIYNMS
Sbjct: 1  MTEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of Carg18439 vs. TAIR10
Match: AT4G21105.1 (cytochrome-c oxidases;electron carriers)

HSP 1 Score: 117.5 bits (293), Expect = 3.2e-27
Identity = 55/67 (82.09%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          +TE PFRPREKL+E+Q+ FQSIQ+HTYLKGP+DK+TSVAIPIALAASSLY+IG GIYNMS
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMS 61

Query: 61 HGIGKKE 68
          +GIGKKE
Sbjct: 62 NGIGKKE 68

[Close]

BLAST of Carg18439 vs. TrEMBL
Match: tr|A0A1S3C9H3|A0A1S3C9H3_CUCME (uncharacterized protein LOC103497961 OS=Cucumis melo OX=3656 GN=LOC103497961 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-26
Identity = 60/65 (92.31%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 3  EQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMSHG 62
          EQPFRPREKL+E+QKYFQSI KHTYLKGP+DK+TSVAIPIALAASSLYLIGRGIYNMSHG
Sbjct: 5  EQPFRPREKLVEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMSHG 64

Query: 63 IGKKE 68
          IGKKE
Sbjct: 65 IGKKE 69

[Close]

BLAST of Carg18439 vs. TrEMBL
Match: tr|A0A0A0KBQ2|A0A0A0KBQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151650 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-26
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 3  EQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMSHG 62
          EQPFRPREKLIERQK FQSI KHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMSHG
Sbjct: 6  EQPFRPREKLIERQKLFQSIHKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMSHG 65

Query: 63 IGKKE 68
          IGKKE
Sbjct: 66 IGKKE 70

[Close]

BLAST of Carg18439 vs. TrEMBL
Match: tr|W9SK31|W9SK31_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021482 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-26
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1   MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS 60
           +TE PFRPREKL+E+QKYFQSIQKHTYLK PLDKVT+VAIPIALAASSLYLIGRGIYNMS
Sbjct: 59  VTEPPFRPREKLLEKQKYFQSIQKHTYLKAPLDKVTAVAIPIALAASSLYLIGRGIYNMS 118

Query: 61  HGIGKKE 68
           HGIGKKE
Sbjct: 119 HGIGKKE 125

[Close]

BLAST of Carg18439 vs. TrEMBL
Match: tr|I1LTS8|I1LTS8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100800807 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.6e-26
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MTE PFRPREKLIE+QKYFQ+I KHTYLKGP DK+TSVAIP+ALAA+SLYLIGRGIYNMS
Sbjct: 1  MTEPPFRPREKLIEKQKYFQNIHKHTYLKGPYDKITSVAIPLALAATSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of Carg18439 vs. TrEMBL
Match: tr|A0A2P5BFD6|A0A2P5BFD6_9ROSA (Cytochrome-c oxidase/ electron carrier OS=Trema orientalis OX=63057 GN=TorRG33x02_323290 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.6e-26
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MTEQPFRPREKLIERQKYFQSIQKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          +TE PFRPREKL+ERQKYFQ+IQKHT+LKGP DK+TSVAIP+ALAASSLYLIGRGIYNMS
Sbjct: 5  VTEPPFRPREKLLERQKYFQNIQKHTHLKGPYDKITSVAIPLALAASSLYLIGRGIYNMS 64

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 65 HGIGKKE 71

The following BLAST results are available for this feature:

BLAST of Carg18439 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943457.1	8.3e-29	100.00	uncharacterized protein LOC111448217 [Cucurbita moschata] >XP_022986051.1 unchar...	[more]
XP_022957674.1	7.0e-28	95.52	uncharacterized protein LOC111459140 isoform X1 [Cucurbita moschata] >XP_0229962...	[more]
XP_022957675.1	7.0e-28	95.52	uncharacterized protein LOC111459140 isoform X2 [Cucurbita moschata] >XP_0229962...	[more]
XP_023532621.1	1.6e-27	94.03	uncharacterized protein LOC111794729 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023532622.1	1.6e-27	94.03	uncharacterized protein LOC111794729 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18439 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21105.1	3.2e-27	82.09	cytochrome-c oxidases;electron carriers	[more]

BLAST of Carg18439 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18439 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C9H3\|A0A1S3C9H3_CUCME	1.9e-26	92.31	uncharacterized protein LOC103497961 OS=Cucumis melo OX=3656 GN=LOC103497961 PE=...	[more]
tr\|A0A0A0KBQ2\|A0A0A0KBQ2_CUCSA	2.5e-26	96.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151650 PE=4 SV=1	[more]
tr\|W9SK31\|W9SK31_9ROSA	3.3e-26	91.04	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021482 PE=4 SV=1	[more]
tr\|I1LTS8\|I1LTS8_SOYBN	9.6e-26	88.06	Uncharacterized protein OS=Glycine max OX=3847 GN=100800807 PE=4 SV=1	[more]
tr\|A0A2P5BFD6\|A0A2P5BFD6_9ROSA	9.6e-26	88.06	Cytochrome-c oxidase/ electron carrier OS=Trema orientalis OX=63057 GN=TorRG33x0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR039296	Predicted_CoxVII
IPR039297	COX7a

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18439-RA	Carg18439-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039297	Cytochrome c oxidase subunit VII	PFAM	PF02238	COX7a	coord: 10..62 e-value: 9.6E-16 score: 57.8
IPR039296	Predicted cytochrome c oxidase subunit VII	PANTHER	PTHR35308	FAMILY NOT NAMED	coord: 1..67
None	No IPR available	PANTHER	PTHR35308:SF6	SUBFAMILY NOT NAMED	coord: 1..67

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18439	Silver-seed gourd	carcarB433
Carg18439	Cucumber (Gy14) v2	carcgybB0422
Carg18439	Cucumber (Gy14) v1	carcgyB0482
Carg18439	Cucurbita maxima (Rimu)	carcmaB0575
Carg18439	Cucurbita maxima (Rimu)	carcmaB0576
Carg18439	Cucurbita moschata (Rifu)	carcmoB0559
Carg18439	Cucurbita moschata (Rifu)	carcmoB0560
Carg18439	Cucurbita pepo (Zucchini)	carcpeB0579
Carg18439	Cucurbita pepo (Zucchini)	carcpeB0582
Carg18439	Cucurbita pepo (Zucchini)	carcpeB0583
Carg18439	Wild cucumber (PI 183967)	carcpiB0451
Carg18439	Cucumber (Chinese Long) v2	carcuB0446
Carg18439	Cucumber (Chinese Long) v3	carcucB0447
Carg18439	Bottle gourd (USVL1VR-Ls)	carlsiB375
Carg18439	Melon (DHL92) v3.5.1	carmeB0419
Carg18439	Melon (DHL92) v3.6.1	carmedB0423
Carg18439	Watermelon (Charleston Gray)	carwcgB0409
Carg18439	Watermelon (97103) v1	carwmB0413
Carg18439	Watermelon (97103) v2	carwmbB0439
Carg18439	Wax gourd	carwgoB0499