Carg21406 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21406
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CLIP-associated protein
Location	Cucurbita_argyrosperma_scaffold_103 : 111140 .. 112291 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCAAATCAATTCGTTCCTTACTCACAAAGCTTCACGCCTCCACAAACAGACCTCTTCCATTCATACACACGTACTGCCTGAGCAGAGTCCTTTGTGGCCCTTTGTTTTCGCTTCTGATCATCTGGGTATCTCTGGCTTTTGCTTGTTCTTCTTCCATTCCTCCTTTCTCTCAGACCCAGTGAGTTTTTTCTTCTCTGCTGCTCTCTTTTTAGGTGTTTTGCTTCTGATTTCTAATGGGTTTTCGAGTATTACGTTGTTATTCGACTGTTTAAATACCCATTTAATTGCATTTTCTTTTGCTGTTCATATTGCTGATTCTTGTTTCTAGTTTTCATGATCAAAGTTCAGAAACGACATTTCAAAATGGTGGAAATGGTGTTTTCTTGTTTTGCATTTTGGGAACAAACTTGTTTTGTTTCCGAGTTAATTGCAGAGAAGAGGAAATGAAGAACTACGAAAACCCATTAAATTTCTTGCAGTGGTTTGCTTTCTTGGTGTTACTGTAATAACAAATTGCAGTTCGCTGCAGTTGATTGCCGCCTCCATCTTCTCAAGGATAAGAACTTTAGGGCTTACCCGGGTGCTCTCCGGCGAGCATCTCTTGCTGCATGTCAGTGCCCTTGTCCCTGCCGTCGTTGAGCGGCTGGGCGATGCCAAGCAGCCTGTCAGAGAAGCCGCCAGGAGGCTCTTGCTCGAGGTACTTGATTAGCCTTTTCTACTGCAGATTAAATGGTTTCAGCACAATTGTGGCTGTTTATGTGCAAATGATTCCGAATTTTTGCTCGGAGAGGGCTGAATTTAATTGAAATCTTATCAATTGGATTCGATTTTGTTTGAGATTTTCTTCCCTTTACAACTATTTCGATATTTTAGTGCATATGTGTATTATAATGATGTTTAATTGGGTTGTCATAGTGATTTGCTAGAACGGTTATAATACTGTATTTGTTTGTAGGGTATCCGACTCGACCAGACTTGTTGATGCTTTAGAACCAAACAAAGTAGAAATTATGTTGGCTACAAATCCATTAACCAATGTCGTTTCCGATTACTTCTGATTGGAGGTTATGAATAACCTGTGTTAATCTATCTTTCTTGCAGTGTTTTCACGTTTTAACCGATGATCGTTTCTTGTTCCACATTTAA

mRNA sequence

ATGACTTCAAATCAATTCGTTCCTTACTCACAAAGCTTCACGCCTCCACAAACAGACCTCTTCCATTCATACACACGGCTTACCCGGGTGCTCTCCGGCGAGCATCTCTTGCTGCATGTCAGTGCCCTTGTCCCTGCCGTCGTTGAGCGGCTGGGCGATGCCAAGCAGCCTGTCAGAGAAGCCGCCAGGAGGCTCTTGCTCGAGTGTTTTCACGTTTTAACCGATGATCGTTTCTTGTTCCACATTTAA

Coding sequence (CDS)

ATGACTTCAAATCAATTCGTTCCTTACTCACAAAGCTTCACGCCTCCACAAACAGACCTCTTCCATTCATACACACGGCTTACCCGGGTGCTCTCCGGCGAGCATCTCTTGCTGCATGTCAGTGCCCTTGTCCCTGCCGTCGTTGAGCGGCTGGGCGATGCCAAGCAGCCTGTCAGAGAAGCCGCCAGGAGGCTCTTGCTCGAGTGTTTTCACGTTTTAACCGATGATCGTTTCTTGTTCCACATTTAA

Protein sequence

MTSNQFVPYSQSFTPPQTDLFHSYTRLTRVLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHVLTDDRFLFHI

Homology

[Close]

BLAST of Carg21406 vs. NCBI nr
Match: XP_022151781.1 (CLIP-associated protein [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 6.8e-09
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Sbjct: 70  VLSGEHLKLHFNALVPAVVERLGDAKQPVREAARRLLLTLMEI 112

[Close]

BLAST of Carg21406 vs. NCBI nr
Match: XP_022953443.1 (CLIP-associated protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 6.8e-09
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Sbjct: 70  VLSGEHLKLHFNALVPAVVERLGDAKQPVREAARRLLLTLMEI 112

[Close]

BLAST of Carg21406 vs. NCBI nr
Match: XP_022953442.1 (CLIP-associated protein-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 6.8e-09
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Sbjct: 70  VLSGEHLKLHFNALVPAVVERLGDAKQPVREAARRLLLTLMEI 112

[Close]

BLAST of Carg21406 vs. NCBI nr
Match: XP_022991554.1 (CLIP-associated protein-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 6.8e-09
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Sbjct: 70  VLSGEHLKLHFNALVPAVVERLGDAKQPVREAARRLLLTLMEI 112

[Close]

BLAST of Carg21406 vs. NCBI nr
Match: XP_022991555.1 (CLIP-associated protein-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 6.8e-09
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VLSGEHL LH +ALVPAVVERLGDAKQPVREAARRLLL    +
Sbjct: 70  VLSGEHLKLHFNALVPAVVERLGDAKQPVREAARRLLLTLMEI 112

[Close]

BLAST of Carg21406 vs. TAIR10
Match: AT2G20190.1 (CLIP-associated protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-11
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VL+GEHL LH++ALVPAVVERLGD+KQPVR+AARRLL     V
Sbjct: 70  VLAGEHLKLHLNALVPAVVERLGDSKQPVRDAARRLLTTLMEV 112

[Close]

BLAST of Carg21406 vs. Swiss-Prot
Match: sp|Q8RWY6|CLASP_ARATH (CLIP-associated protein OS=Arabidopsis thaliana OX=3702 GN=CLASP PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-10
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VL+GEHL LH++ALVPAVVERLGD+KQPVR+AARRLL     V
Sbjct: 70  VLAGEHLKLHLNALVPAVVERLGDSKQPVRDAARRLLTTLMEV 112

[Close]

BLAST of Carg21406 vs. TrEMBL
Match: tr|W9S2Z6|W9S2Z6_9ROSA (CLIP-associating protein 1-B OS=Morus notabilis OX=981085 GN=L484_015154 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.7e-09
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VLSGEHL LH +ALVPAVVERLGDAKQPVR+AARRLLL    V
Sbjct: 70  VLSGEHLKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV 112

[Close]

BLAST of Carg21406 vs. TrEMBL
Match: tr|A0A2P5C3H9|A0A2P5C3H9_9ROSA (Coatomer beta subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_299110 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.7e-09
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VLSGEHL LH +ALVPAVVERLGDAKQPVR+AARRLLL    V
Sbjct: 70  VLSGEHLKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV 112

[Close]

BLAST of Carg21406 vs. TrEMBL
Match: tr|S8CFN9|S8CFN9_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_09065 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.7e-09
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VLSGEHL LH +ALVPAVVERLGDAKQPVR+AARRLLL    V
Sbjct: 70  VLSGEHLKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV 112

[Close]

BLAST of Carg21406 vs. TrEMBL
Match: tr|A0A067JR47|A0A067JR47_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17589 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.7e-09
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VLSGEHL LH +ALVPAVVERLGDAKQPVR+AARRLLL    V
Sbjct: 70  VLSGEHLKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV 112

[Close]

BLAST of Carg21406 vs. TrEMBL
Match: tr|A0A2P5BRI0|A0A2P5BRI0_PARAD (Coatomer beta subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_216510 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.7e-09
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 30  VLSGEHLLLHVSALVPAVVERLGDAKQPVREAARRLLLECFHV 73
           VLSGEHL LH +ALVPAVVERLGDAKQPVR+AARRLLL    V
Sbjct: 70  VLSGEHLKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV 112

The following BLAST results are available for this feature:

BLAST of Carg21406 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151781.1	6.8e-09	81.40	CLIP-associated protein [Momordica charantia]	[more]
XP_022953443.1	6.8e-09	81.40	CLIP-associated protein-like isoform X2 [Cucurbita moschata]	[more]
XP_022953442.1	6.8e-09	81.40	CLIP-associated protein-like isoform X1 [Cucurbita moschata]	[more]
XP_022991554.1	6.8e-09	81.40	CLIP-associated protein-like isoform X1 [Cucurbita maxima]	[more]
XP_022991555.1	6.8e-09	81.40	CLIP-associated protein-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg21406 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20190.1	2.3e-11	74.42	CLIP-associated protein	[more]

BLAST of Carg21406 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8RWY6\|CLASP_ARATH	4.2e-10	74.42	CLIP-associated protein OS=Arabidopsis thaliana OX=3702 GN=CLASP PE=1 SV=1	[more]

BLAST of Carg21406 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9S2Z6\|W9S2Z6_9ROSA	7.7e-09	81.40	CLIP-associating protein 1-B OS=Morus notabilis OX=981085 GN=L484_015154 PE=4 SV...	[more]
tr\|A0A2P5C3H9\|A0A2P5C3H9_9ROSA	7.7e-09	81.40	Coatomer beta subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_299110 PE=4 SV=...	[more]
tr\|S8CFN9\|S8CFN9_9LAMI	7.7e-09	81.40	Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_09065 PE=...	[more]
tr\|A0A067JR47\|A0A067JR47_JATCU	7.7e-09	81.40	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17589 PE=4 SV=1	[more]
tr\|A0A2P5BRI0\|A0A2P5BRI0_PARAD	7.7e-09	81.40	Coatomer beta subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_216510 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21406-RA	Carg21406-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 23..82 e-value: 2.1E-8 score: 35.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21406	CmaCh13G004850	Cucurbita maxima (Rimu)	carcmaB0551

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21406	Watermelon (97103) v2	carwmbB0422
Carg21406	Wax gourd	carwgoB0483
Carg21406	Wax gourd	carwgoB0484
Carg21406	Cucurbita pepo (Zucchini)	carcpeB0551
Carg21406	Silver-seed gourd	carcarB326
Carg21406	Silver-seed gourd	carcarB419
Carg21406	Silver-seed gourd	carcarB421
Carg21406	Cucumber (Gy14) v2	carcgybB0404
Carg21406	Cucumber (Gy14) v2	carcgybB0405
Carg21406	Cucumber (Gy14) v1	carcgyB0461
Carg21406	Cucumber (Gy14) v1	carcgyB0462
Carg21406	Cucumber (Gy14) v1	carcgyB0463
Carg21406	Cucurbita maxima (Rimu)	carcmaB0552
Carg21406	Cucurbita maxima (Rimu)	carcmaB0554
Carg21406	Cucurbita moschata (Rifu)	carcmoB0536
Carg21406	Cucurbita moschata (Rifu)	carcmoB0537
Carg21406	Cucurbita moschata (Rifu)	carcmoB0539
Carg21406	Cucurbita pepo (Zucchini)	carcpeB0553
Carg21406	Cucurbita pepo (Zucchini)	carcpeB0552
Carg21406	Wild cucumber (PI 183967)	carcpiB0430
Carg21406	Wild cucumber (PI 183967)	carcpiB0432
Carg21406	Wild cucumber (PI 183967)	carcpiB0434
Carg21406	Cucumber (Chinese Long) v2	carcuB0426
Carg21406	Cucumber (Chinese Long) v2	carcuB0428
Carg21406	Cucumber (Chinese Long) v2	carcuB0430
Carg21406	Cucumber (Chinese Long) v3	carcucB0428
Carg21406	Cucumber (Chinese Long) v3	carcucB0430
Carg21406	Cucumber (Chinese Long) v3	carcucB0432
Carg21406	Bottle gourd (USVL1VR-Ls)	carlsiB361
Carg21406	Bottle gourd (USVL1VR-Ls)	carlsiB362
Carg21406	Melon (DHL92) v3.5.1	carmeB0400
Carg21406	Melon (DHL92) v3.5.1	carmeB0401
Carg21406	Melon (DHL92) v3.6.1	carmedB0405
Carg21406	Melon (DHL92) v3.6.1	carmedB0406
Carg21406	Watermelon (Charleston Gray)	carwcgB0391
Carg21406	Watermelon (97103) v1	carwmB0396