Carg20650 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20650
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pgr5-like protein 1b, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_100 : 374488 .. 378188 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGCACATGCACCTCCTTCTCTCGCCATCTCATCCAATCCACCGTCTCCGACCTCGCCAGAACAATTTGCACCGCCGCCCCCTTTCATCTTCCTCGATTCTCCGCCAAGACCGCCCTTTCCTCCTCCAACGACCTCGCTCAAGGCCCCTCTTGCATCTTCGTCGGCCCCATAGACACCGCCAGTCAAGAAACCCTTGAAGCTCTCTATCTTCAGGTTCCGCTTTACTACGCCTTTCAATCTCTCTCTCTAATCTCCCTCTCTCGTCTCCGTCTTTCACTTGTGTTCTTGTCGTGGTGGTTTTTTTAGGCTAGGGATGCATACTATAATGGTCAACCGTTGATCCTTGATGATATGTTCGATCGAGTCGAGGTAAGCGCGCTAAGGGAAAACAATTTCTCCACAGATCTTGGTTGTTTTCTTACTCTTTTCTTGATTGAATCAGTTAAAATTGAGGCGGTATGGTTCCAAATCTGTGGTCAAATATCCTCGTTGTAGTCTTCGACGGCAATCGACGTATGCGGATGCTGAGGTGATTCTCCTTCTCATTTCTTTCTTTCTTCTGCTAGGGCCACTGAAATCTGGTTCTTAGGGTTCATCTGTTTAATTTCGTAAAAAGAACTTGAGGCAGGAATGTAACTTACAATTGCTTAAATTCATATTCAACCCTATAAATGAAGTTTTTTATGGTTTTAATTCGATATAAATATGTTTTTGTTTGGGCATGAATGTTCGAAGGATTGATTTGTGTGAGATCCCACATCGTTTGGGGAGGATAACGAAACACCTAAAGGTGTGGAAACCTCTTCCTAACAAACGCGTTTTAAAAACTTTGAGGGGAAGTTCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCGGTGGGCTTGAGCCGTTACAAATGATATCAGAGCCAGACACCGGGTGACTTGCCAGCAAAGGGCTGAGCCTCGAAGGGGGGTGGACATGAGGTGACGTGGGCTATGCGCTAGCGAAGAGGCTAAGCCCCAAAGGGGGTGGTGGGCTATGCGCTAGCGAAGAGGCTAAGCCCCAAAGGGGGTGGTGGGCTATGTGCCAGTGAAGAGGCTAAGCTCCAAAGGGGGTGGATCTGGTGGAGGTCCCATATCGATTGGAGAAAGGAACAAGTGCTAGCGAGGACATTGGATCTCGAAGGGGGGTGAATTGTGAGATTCCACATCGGTTGGGGAAGAGAACGAAACGCTCTTTAGAAACCTCTCCCTAATATGAGTTTTAAAAACCTGGAGGGAAAGCCCAAAGAGGACAATATCGGCTAGCAGTTGGCTTGGACCGTTACAATTTGTCTGCCCTATGAAATCCTTTTGCTCTCTTGTCTTCTCTTTTAGCTTGCTTCATTTGAATATTCAATGACATGAATGTAGGGCAGGAGGATCTATCACAGGTTCTTGCATTAGCAGGCATATGGTTGGTGTTCCTCGCACTTGGCTGTTCAGCATGTCTTGTTCCCTTAATCTGCACGGCTGACTTAGTTTTCAAGGATCCACTCAGTTTAGGACTTTCCTATAACACCCAAGGATCTGCATTTGAATTTCTTTCAGCTATAAATGCCATCCTCTTCATCGGATTCGGGTCTCTGATTGGCTACCCAATTGCTTCAGCTTCTGGTAAAACTGCTGCTTGTTGATTTTGCGATTCGATCGAAATCTTAGTAGTTCAATTCTTAACTAATCGTTATGGACTTATGTCTCTCATACCCAAGATTCTGCTTGCTTATATTTAGTGTCTTTTGGCTATTGCTGCAGTGGGAGTACTTCAGGGCTTATGGAGAAATGATTTGGTGGCACTGAAAGGAGCTTGCCCAAATTGTGGAGAAGAAGTATGTTGTTTTGAATGGCTTGTGAATCATTCCGTTATGTTTTTCTCCCCCCCATTGCCATAATTCATGAACGAATACTAGCTTCGTTGCGAGAACATATTTTTACGTGGTTAAATCATTTTCTCTTTTAGGTGTTTGCATTTGTGAGATCGGATCGTGCGAATGTCTCTCCTCATAGATCAGACTGTCATGTATGCGAATGCTTGTTGGAATTCCGTGTCAAGTTCGAGGTAATTTACTTCGCTTTTGTTTCAAACCACGCTAAAGCTGGAAACGATCATCATGCAATTATCTGTTTATACTTTTTCTGACCATTATCCCTTTCTCCTTAAGAGAGAGTGGAAAAGAGTTTCATATCTGAAATTTCTGGTCTTATACATGATTCGTATGCCCTGTAGATCTGCTTAGTGCACATCATATGAAACTATTACCTCCAAGTTTTGGCTTGTCCCGTCTTGAGCTCTATATGAGTTCGAGGTTTTCTTTGTAACTCCCGAAACTTCTTCTTAGTGGCTCCGTTCCATGCTTCATTTTACTGAGAACCTCAAAATGACTCTATTTCATTAGATTCCATTCATTTAATATCTCAGTGGTGTCATTAAGATAAGAGATGTCGTTTCTAGTCTATATGTTTCTATTTCTATAGATATGGAAAGTTAAAAAATGATCATATATATAATAATCCCGAAATTTAAATAGATAAGAGATCTTTATGCAGGAAGATAATCAATAAGTTCATAATGGGATTGTTGGTGGCAAAAAATAAAAAAAATAATAAAAAAAGGAAAAGAAAAACTATTATGAAGAGACAGATGCTTAATCGGGGGTGGGTATTGTGCAGAAATCGAGTTCGAGACTAGGTCGACGATGGGTTTATGGGCGTATCTACCTTGTAAGAGGTAAAAGCAGGCAACAAAGATTGCTGTAGGAGCAACTTGTGTATATGTAGTGCCATGTCTTAATTTGCTTGCAATGAGGTCTTGTAGTTGTACCATTACAGACATAGCGCCTGCTAGGTGATTACAGTTTAATGAAAACCTTATCCCATGATGTCTATGGATCCAACAATTTAGCTAGTTTGAGCATCGACAAGTGACCGTTCTGATGCTGCAATTGAGTATTCACTTTGGTCGATTTCCTGTCCTTCATGCCAACTGATCCGGGATCGAAATTTTGGGGGCAAATTCGAGATACCCAGTGGAGAGTATGCTGAGAAGATGCCAAGGATTTTGAGAATTGTTGGAGTGTAACCATGTCCAAGTCTAAAAGATATGCTCATGAAGGAGGTTGCATGACGTCTTGGGCAAGTACGTGCATATTAGGTGACCGAAGAGACCATGTTAGAAGCCCCCCACGAGATGAACACCAAGCTAGACATGCTCAATCGAGCTTAAATGAAATTTATGCTCAAAGTCAATAGGAAATGTCACTTTTCATTTACTATAAAGTAGTGTTGTAATTTCGATGTGAAATTTCTCGCTTTATGCTTTCTTTGTATTATTGTGTTTACATGGTTTTAGAATTGTCTGGTTTGGTCGATTAGATTTTGTAGAGTTTAAAATTTTAAAAAATGACTCGATGACCCAAATAACACGAACCACCAAACTCAAATTGGGGATTGGATTGGATTGGGTTGAGTGAAAATTTTAAAAAATAAAAAATTCAGTTTGTTTCGTGGGTTAGAACTTTTTAATTCGAGTTAACCTGACTAACTCGAAAATAGGGTTGTAAAATAGGGTTTACAACCCAATCCTACCTTATTTTAAAATTTGTTATGAATATTAAAAATATTTAGCGTTTGTAACATATGCTAGTGTTGCGTTGTGACTCGTGAATGTTTAATAT

mRNA sequence

ATGGCCGGCACATGCACCTCCTTCTCTCGCCATCTCATCCAATCCACCGTCTCCGACCTCGCCAGAACAATTTGCACCGCCGCCCCCTTTCATCTTCCTCGATTCTCCGCCAAGACCGCCCTTTCCTCCTCCAACGACCTCGCTCAAGGCCCCTCTTGCATCTTCGTCGGCCCCATAGACACCGCCAGTCAAGAAACCCTTGAAGCTCTCTATCTTCAGGCTAGGGATGCATACTATAATGGTCAACCGTTGATCCTTGATGATATGTTCGATCGAGTCGAGTTAAAATTGAGGCGGTATGGTTCCAAATCTGTGGTCAAATATCCTCGTTGTAGTCTTCGACGGCAATCGACGTATGCGGATGCTGAGGAGGATCTATCACAGGTTCTTGCATTAGCAGGCATATGGTTGGTGTTCCTCGCACTTGGCTGTTCAGCATGTCTTGTTCCCTTAATCTGCACGGCTGACTTAGTTTTCAAGGATCCACTCAGTTTAGGACTTTCCTATAACACCCAAGGATCTGCATTTGAATTTCTTTCAGCTATAAATGCCATCCTCTTCATCGGATTCGGGTCTCTGATTGGCTACCCAATTGCTTCAGCTTCTGTGGGAGTACTTCAGGGCTTATGGAGAAATGATTTGGTGGCACTGAAAGGAGCTTGCCCAAATTGTGGAGAAGAAGTGTTTGCATTTGTGAGATCGGATCGTGCGAATGTCTCTCCTCATAGATCAGACTGTCATGTATGCGAATGCTTGTTGGAATTCCGTGTCAAGTTCGAGAAATCGAGTTCGAGACTAGGTCGACGATGGGTTTATGGGCGTATCTACCTTGTAAGAGGTAAAAGCAGGCAACAAAGATTGCTGTAGGAGCAACTTGTGTATATGTAGTGCCATGTCTTAATTTGCTTGCAATGAGGTCTTGTAGTTGTACCATTACAGACATAGCGCCTGCTAGGTGATTACAGTTTAATGAAAACCTTATCCCATGATGTCTATGGATCCAACAATTTAGCTAGTTTGAGCATCGACAAGTGACCGTTCTGATGCTGCAATTGAGTATTCACTTTGGTCGATTTCCTGTCCTTCATGCCAACTGATCCGGGATCGAAATTTTGGGGGCAAATTCGAGATACCCAGTGGAGAGTATGCTGAGAAGATGCCAAGGATTTTGAGAATTGTTGGAGTGTAACCATGTCCAAGTCTAAAAGATATGCTCATGAAGGAGGTTGCATGACGTCTTGGGCAAGTACGTGCATATTAGGTGACCGAAGAGACCATGTTAGAAGCCCCCCACGAGATGAACACCAAGCTAGACATGCTCAATCGAGCTTAAATGAAATTTATGCTCAAAGTCAATAGGAAATGTCACTTTTCATTTACTATAAAGTAGTGTTGTAATTTCGATGTGAAATTTCTCGCTTTATGCTTTCTTTGTATTATTGTGTTTACATGGTTTTAGAATTGTCTGGTTTGGTCGATTAGATTTTGTAGAGTTTAAAATTTTAAAAAATGACTCGATGACCCAAATAACACGAACCACCAAACTCAAATTGGGGATTGGATTGGATTGGGTTGAGTGAAAATTTTAAAAAATAAAAAATTCAGTTTGTTTCGTGGGTTAGAACTTTTTAATTCGAGTTAACCTGACTAACTCGAAAATAGGGTTGTAAAATAGGGTTTACAACCCAATCCTACCTTATTTTAAAATTTGTTATGAATATTAAAAATATTTAGCGTTTGTAACATATGCTAGTGTTGCGTTGTGACTCGTGAATGTTTAATAT

Coding sequence (CDS)

ATGGCCGGCACATGCACCTCCTTCTCTCGCCATCTCATCCAATCCACCGTCTCCGACCTCGCCAGAACAATTTGCACCGCCGCCCCCTTTCATCTTCCTCGATTCTCCGCCAAGACCGCCCTTTCCTCCTCCAACGACCTCGCTCAAGGCCCCTCTTGCATCTTCGTCGGCCCCATAGACACCGCCAGTCAAGAAACCCTTGAAGCTCTCTATCTTCAGGCTAGGGATGCATACTATAATGGTCAACCGTTGATCCTTGATGATATGTTCGATCGAGTCGAGTTAAAATTGAGGCGGTATGGTTCCAAATCTGTGGTCAAATATCCTCGTTGTAGTCTTCGACGGCAATCGACGTATGCGGATGCTGAGGAGGATCTATCACAGGTTCTTGCATTAGCAGGCATATGGTTGGTGTTCCTCGCACTTGGCTGTTCAGCATGTCTTGTTCCCTTAATCTGCACGGCTGACTTAGTTTTCAAGGATCCACTCAGTTTAGGACTTTCCTATAACACCCAAGGATCTGCATTTGAATTTCTTTCAGCTATAAATGCCATCCTCTTCATCGGATTCGGGTCTCTGATTGGCTACCCAATTGCTTCAGCTTCTGTGGGAGTACTTCAGGGCTTATGGAGAAATGATTTGGTGGCACTGAAAGGAGCTTGCCCAAATTGTGGAGAAGAAGTGTTTGCATTTGTGAGATCGGATCGTGCGAATGTCTCTCCTCATAGATCAGACTGTCATGTATGCGAATGCTTGTTGGAATTCCGTGTCAAGTTCGAGAAATCGAGTTCGAGACTAGGTCGACGATGGGTTTATGGGCGTATCTACCTTGTAAGAGGTAAAAGCAGGCAACAAAGATTGCTGTAG

Protein sequence

MAGTCTSFSRHLIQSTVSDLARTICTAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPIDTASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYADAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFEFLSAINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVSPHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQRLL

Homology

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BLAST of Carg20650 vs. NCBI nr
Match: XP_022964680.1 (uncharacterized protein LOC111464688 [Cucurbita moschata])

HSP 1 Score: 569.3 bits (1466), Expect = 7.4e-159
Identity = 286/288 (99.31%), Postives = 287/288 (99.65%), Query Frame = 0


Query: 1   MAGTCTSFSRHLIQSTVSDLARTICTAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPID 60
           MAGTCTSFSRHLIQSTVSDLARTI TAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPID
Sbjct: 1   MAGTCTSFSRHLIQSTVSDLARTIRTAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPID 60

Query: 61  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA 120
           TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA
Sbjct: 61  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA 120

Query: 121 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFEFLS 180
           DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFEFLS
Sbjct: 121 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFEFLS 180

Query: 181 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVS 240
           AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVAL+GACPNCGEEVFAFVRSDRANVS
Sbjct: 181 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALRGACPNCGEEVFAFVRSDRANVS 240

Query: 241 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQRLL 289
           PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQRLL
Sbjct: 241 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQRLL 288

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BLAST of Carg20650 vs. NCBI nr
Match: XP_023519420.1 (uncharacterized protein LOC111782835 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 569.3 bits (1466), Expect = 7.4e-159
Identity = 286/288 (99.31%), Postives = 287/288 (99.65%), Query Frame = 0


Query: 1   MAGTCTSFSRHLIQSTVSDLARTICTAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPID 60
           MAGTCTSFSRHLIQSTVSDLARTI TAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPID
Sbjct: 1   MAGTCTSFSRHLIQSTVSDLARTIRTAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPID 60

Query: 61  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA 120
           TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA
Sbjct: 61  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA 120

Query: 121 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFEFLS 180
           DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQG+AFEFLS
Sbjct: 121 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGTAFEFLS 180

Query: 181 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVS 240
           AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVS
Sbjct: 181 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVS 240

Query: 241 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQRLL 289
           PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQRLL
Sbjct: 241 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQRLL 288

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BLAST of Carg20650 vs. NCBI nr
Match: XP_022970554.1 (uncharacterized protein LOC111469496 isoform X1 [Cucurbita maxima])

HSP 1 Score: 555.8 bits (1431), Expect = 8.4e-155
Identity = 279/288 (96.88%), Postives = 282/288 (97.92%), Query Frame = 0


Query: 1   MAGTCTSFSRHLIQSTVSDLARTICTAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPID 60
           MAGTCTSFSRHLIQSTVSDLARTI TAAPFHLPRFSAK ALSSSNDLAQGPSCIFVGPID
Sbjct: 1   MAGTCTSFSRHLIQSTVSDLARTIRTAAPFHLPRFSAKIALSSSNDLAQGPSCIFVGPID 60

Query: 61  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA 120
           TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQ TYA
Sbjct: 61  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQLTYA 120

Query: 121 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFEFLS 180
           DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTA LVFKDPLSLGLSYN+QGSAF+FLS
Sbjct: 121 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTAVLVFKDPLSLGLSYNSQGSAFQFLS 180

Query: 181 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVS 240
           AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSD  NVS
Sbjct: 181 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDHTNVS 240

Query: 241 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQRLL 289
           PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGR+YLVRGKSRQQRLL
Sbjct: 241 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRVYLVRGKSRQQRLL 288

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BLAST of Carg20650 vs. NCBI nr
Match: XP_023519421.1 (uncharacterized protein LOC111782835 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 553.5 bits (1425), Expect = 4.2e-154
Identity = 277/279 (99.28%), Postives = 278/279 (99.64%), Query Frame = 0


Query: 1   MAGTCTSFSRHLIQSTVSDLARTICTAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPID 60
           MAGTCTSFSRHLIQSTVSDLARTI TAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPID
Sbjct: 1   MAGTCTSFSRHLIQSTVSDLARTIRTAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPID 60

Query: 61  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA 120
           TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA
Sbjct: 61  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA 120

Query: 121 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFEFLS 180
           DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQG+AFEFLS
Sbjct: 121 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGTAFEFLS 180

Query: 181 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVS 240
           AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVS
Sbjct: 181 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVS 240

Query: 241 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVR 280
           PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVR
Sbjct: 241 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVR 279

[Close]

BLAST of Carg20650 vs. NCBI nr
Match: XP_022970555.1 (uncharacterized protein LOC111469496 isoform X2 [Cucurbita maxima])

HSP 1 Score: 540.0 bits (1390), Expect = 4.8e-150
Identity = 270/279 (96.77%), Postives = 273/279 (97.85%), Query Frame = 0


Query: 1   MAGTCTSFSRHLIQSTVSDLARTICTAAPFHLPRFSAKTALSSSNDLAQGPSCIFVGPID 60
           MAGTCTSFSRHLIQSTVSDLARTI TAAPFHLPRFSAK ALSSSNDLAQGPSCIFVGPID
Sbjct: 1   MAGTCTSFSRHLIQSTVSDLARTIRTAAPFHLPRFSAKIALSSSNDLAQGPSCIFVGPID 60

Query: 61  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA 120
           TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQ TYA
Sbjct: 61  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQLTYA 120

Query: 121 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFEFLS 180
           DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTA LVFKDPLSLGLSYN+QGSAF+FLS
Sbjct: 121 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTAVLVFKDPLSLGLSYNSQGSAFQFLS 180

Query: 181 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVS 240
           AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSD  NVS
Sbjct: 181 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDHTNVS 240

Query: 241 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVR 280
           PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGR+YLVR
Sbjct: 241 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRVYLVR 279

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BLAST of Carg20650 vs. TAIR10
Match: AT5G59400.2 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 338.2 bits (866), Expect = 5.0e-93
Identity = 182/297 (61.28%), Postives = 215/297 (72.39%), Query Frame = 0


Query: 1   MAGTCTSFSRHLI-QSTVSDLARTICTAAPFHLPRFSAKT------ALSSSNDLAQGPSC 60
           MAGTCTS    LI  S++ +L+R I  A      RFS +T       L++     +GPSC
Sbjct: 1   MAGTCTSIRPRLIGSSSIVELSRLINRAGVPFSVRFSTRTRALHGGGLTAPTSREEGPSC 60

Query: 61  IFVGPIDTASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSL 120
           IFVGPID+A +ETLEALY QA+DAYYNG+PLI+DDMFDRVELKLR YGSKSVVKYPRCSL
Sbjct: 61  IFVGPIDSARKETLEALYRQAKDAYYNGKPLIVDDMFDRVELKLRWYGSKSVVKYPRCSL 120

Query: 121 RRQSTYADAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVF-KDPLSLGLSYNTQ 180
            RQSTYADAE+D SQVL LA +W++    G SAC++P I    LV+  DP   GL Y++Q
Sbjct: 121 LRQSTYADAEDDASQVLLLATVWIMIFLFGSSACVLPTIYGVGLVYGGDPFDSGLVYSSQ 180

Query: 181 -GSAFEFLSAINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAF 240
             S+   LS  N IL    G   GYPIAS++V VL+GLWRNDL ALKG CPNCGEEVFAF
Sbjct: 181 LSSSVPILSKFNGILLSVLGPAFGYPIASSAVRVLKGLWRNDLTALKGDCPNCGEEVFAF 240

Query: 241 VRSDRANVSPHRSDCHVCECLLEFRVKFE--KSSSRLGRRWVYGRIYLVRGKSRQQR 287
           VRSD++N S H++DCHVCEC LEFR K E  KS+SRLGR+WVYGRIYLV    R +R
Sbjct: 241 VRSDQSNRSAHKADCHVCECTLEFRTKVEVDKSASRLGRKWVYGRIYLVSRPRRDRR 297

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BLAST of Carg20650 vs. TrEMBL
Match: tr|A0A1S3C6W2|A0A1S3C6W2_CUCME (PGR5-like protein 1A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497151 PE=4 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 5.6e-139
Identity = 253/291 (86.94%), Postives = 270/291 (92.78%), Query Frame = 0


Query: 1   MAGTCTSFSRHLIQSTVSDLARTICTAAPFHLPRFSAKT---ALSSSNDLAQGPSCIFVG 60
           MAGT TSFS HLI+STVS+L RTI    PFHL  FS KT    LSSS++LAQGPSCIFVG
Sbjct: 1   MAGTSTSFSPHLIKSTVSNLTRTIRAVTPFHLVLFSTKTPNSPLSSSDNLAQGPSCIFVG 60

Query: 61  PIDTASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQS 120
           PI+TA+QETLEALYLQARDAYY+GQPLILDDMFDRVELKLR YGSKSVVKYPRCSLRRQS
Sbjct: 61  PIETATQETLEALYLQARDAYYSGQPLILDDMFDRVELKLRWYGSKSVVKYPRCSLRRQS 120

Query: 121 TYADAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFE 180
           TY+DAEEDLSQVLALAGIWL+FLALGCSACLVPLICTADL+F+DPLSLGLSYNT GS FE
Sbjct: 121 TYSDAEEDLSQVLALAGIWLLFLALGCSACLVPLICTADLIFQDPLSLGLSYNTHGSPFE 180

Query: 181 FLSAINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRA 240
           FLSAINAILF+ FGSLIGYPIA+ASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRA
Sbjct: 181 FLSAINAILFMAFGSLIGYPIATASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRA 240

Query: 241 NVSPHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQRLL 289
           N SPHRSDCHVCECLLEFR+KFEKSS++LGR+WVYGRIYLVR KSR QRLL
Sbjct: 241 NGSPHRSDCHVCECLLEFRIKFEKSSTKLGRQWVYGRIYLVRRKSRHQRLL 291

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BLAST of Carg20650 vs. TrEMBL
Match: tr|A0A0A0M0I2|A0A0A0M0I2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523060 PE=4 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 1.1e-137
Identity = 252/291 (86.60%), Postives = 267/291 (91.75%), Query Frame = 0


Query: 1   MAGTCTSFSRHLIQSTVSDLARTICTAAPFHLPRFSAKT---ALSSSNDLAQGPSCIFVG 60
           MAG  TSFS HLI+STVS+LARTI  A PFHL  FS KT    LSSS DLAQGPSCIFVG
Sbjct: 1   MAGASTSFSPHLIKSTVSNLARTIRAATPFHLVPFSTKTPNSPLSSSEDLAQGPSCIFVG 60

Query: 61  PIDTASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQS 120
           PI+TA+QETLEALYLQARDAYY+GQPLILDDMFDRVELKLR YGSKSVVKYPRCSLRRQS
Sbjct: 61  PIETATQETLEALYLQARDAYYSGQPLILDDMFDRVELKLRWYGSKSVVKYPRCSLRRQS 120

Query: 121 TYADAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFE 180
           TY+DAEEDLSQVLALAGIWL+FLALGCSACLVPLIC ADL+FKDPLSLGLSY+T GS F 
Sbjct: 121 TYSDAEEDLSQVLALAGIWLLFLALGCSACLVPLICIADLIFKDPLSLGLSYDTHGSPFG 180

Query: 181 FLSAINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRA 240
           FLSAINAILF+ FGSLIGYPI +ASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRA
Sbjct: 181 FLSAINAILFMAFGSLIGYPITTASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRA 240

Query: 241 NVSPHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQRLL 289
           N SPHRSDCHVCECLLEFR+KFEKSS++LGR+WVYGRIYLVR KSR QRLL
Sbjct: 241 NGSPHRSDCHVCECLLEFRIKFEKSSTKLGRQWVYGRIYLVRRKSRHQRLL 291

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BLAST of Carg20650 vs. TrEMBL
Match: tr|A0A2P5D667|A0A2P5D667_9ROSA (PGR5-like A protein OS=Trema orientalis OX=63057 GN=TorRG33x02_260670 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 6.2e-106
Identity = 198/286 (69.23%), Postives = 232/286 (81.12%), Query Frame = 0


Query: 2   AGTCTSFSRHLIQSTVSDLARTICTAAPFHLPRFSAK-TALSSSNDLAQGPSCIFVGPID 61
           +GT  SFS H+I S+  +LART    AP  +   SA  +   + +DL QGPSCI++GPI+
Sbjct: 11  SGTSPSFSPHVIGSSFPELARTSRPGAPSSVRISSANGSNFPTRDDLVQGPSCIYIGPIE 70

Query: 62  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA 121
           TAS+ETLEALY QARD+YY+G+PLI+DDMFDRVELKLR YGSK VVKYPRCSLRRQSTYA
Sbjct: 71  TASKETLEALYRQARDSYYSGKPLIVDDMFDRVELKLRWYGSKCVVKYPRCSLRRQSTYA 130

Query: 122 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFEFLS 181
           DAEEDLSQV  LA IW++FLA+G SAC+VP+I T  L ++D    GLSY  Q  A EFL+
Sbjct: 131 DAEEDLSQVFTLASIWVLFLAIGSSACIVPIIYTIGLAYQDAFDSGLSYLNQVPALEFLA 190

Query: 182 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVS 241
            +N +LF+ FGSL+GYPIASASV VL GLWRNDLVALKGACPNCGEEVFAFV+SD+AN S
Sbjct: 191 TVNGVLFMVFGSLVGYPIASASVKVLHGLWRNDLVALKGACPNCGEEVFAFVKSDQANDS 250

Query: 242 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQR 287
           PHR+DCHVCE LLEFR K EKS SRLGRRWVYGRIYLV  ++R+QR
Sbjct: 251 PHRADCHVCESLLEFRTKAEKSVSRLGRRWVYGRIYLVSRRNRRQR 296

[Close]

BLAST of Carg20650 vs. TrEMBL
Match: tr|A0A2P5DQJ6|A0A2P5DQJ6_PARAD (PGR5-like A protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_041810 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 2.4e-105
Identity = 196/286 (68.53%), Postives = 234/286 (81.82%), Query Frame = 0


Query: 2   AGTCTSFSRHLIQSTVSDLARTICTAAPFHLPRFSAK-TALSSSNDLAQGPSCIFVGPID 61
           +GT  SFS H+I S+  +LART    AP  +   S   +   + +DL QGPSCI++GPI+
Sbjct: 16  SGTSPSFSPHVIGSSFPELARTSRPGAPSSVRISSVNGSNFPTRDDLVQGPSCIYIGPIE 75

Query: 62  TASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQSTYA 121
           TAS+ETLEALY QARD+YY+G+PLI+DDMFDRVELKLR YGSK VVKYPRCSLRRQSTYA
Sbjct: 76  TASKETLEALYRQARDSYYSGKPLIVDDMFDRVELKLRWYGSKCVVKYPRCSLRRQSTYA 135

Query: 122 DAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFEFLS 181
           DAEEDLSQV  LA IW++FLA+G SAC++P+I T  L ++D +  GLSY +Q  A EFL+
Sbjct: 136 DAEEDLSQVFTLASIWVLFLAIGSSACIMPVIYTIGLAYQDAVESGLSYLSQVPALEFLA 195

Query: 182 AINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRANVS 241
            +N +LF+ FGSL+GYPIASASV VL+GLWRNDLVALKGACPNCGEEVFAFV+SD+AN S
Sbjct: 196 TVNGVLFMVFGSLVGYPIASASVKVLRGLWRNDLVALKGACPNCGEEVFAFVKSDQANDS 255

Query: 242 PHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQR 287
           PHR+DCHVCE LLEFR K EKS SRLGRRWVYGRIYLV  ++R+QR
Sbjct: 256 PHRADCHVCESLLEFRTKAEKSVSRLGRRWVYGRIYLVSRRNRRQR 301

[Close]

BLAST of Carg20650 vs. TrEMBL
Match: tr|A0A2I4EV31|A0A2I4EV31_9ROSI (PGR5-like protein 1B, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC108992977 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 5.3e-105
Identity = 201/291 (69.07%), Postives = 234/291 (80.41%), Query Frame = 0


Query: 1   MAGT-CTSFSRHLIQSTVSDLARTICTAAPFHLPRFSAKTALSSSND--LAQGPSCIFVG 60
           MAGT  +SF+ H+I STV +L+R   T APF L R SAK   S + D  LA+GPSCIFVG
Sbjct: 1   MAGTSASSFTPHVIGSTVFELSRINRTTAPF-LVRISAKANGSPTCDDALAEGPSCIFVG 60

Query: 61  PIDTASQETLEALYLQARDAYYNGQPLILDDMFDRVELKLRRYGSKSVVKYPRCSLRRQS 120
           PI+TASQETLEALY QARDAYY+G+PLI+DDMFDRVELKLR Y SKS++KYPRCSLRRQS
Sbjct: 61  PIETASQETLEALYCQARDAYYSGEPLIVDDMFDRVELKLRWYRSKSIIKYPRCSLRRQS 120

Query: 121 TYADAEEDLSQVLALAGIWLVFLALGCSACLVPLICTADLVFKDPLSLGLSYNTQGSAFE 180
           TYADAEEDLSQV ALA IW++FLA G SAC+VP++ T  L ++D  S G  Y++Q    E
Sbjct: 121 TYADAEEDLSQVFALASIWILFLAFGSSACMVPIVYTVGLAYQDAYSSGSFYSSQAPVLE 180

Query: 181 FLSAINAILFIGFGSLIGYPIASASVGVLQGLWRNDLVALKGACPNCGEEVFAFVRSDRA 240
           FL+ +N ILF+  GS+IGYPIASASV VLQGLWRNDLVALKGACPNCGEEVFAFVR D+ 
Sbjct: 181 FLATLNGILFMALGSVIGYPIASASVKVLQGLWRNDLVALKGACPNCGEEVFAFVRPDQC 240

Query: 241 NVSPHRSDCHVCECLLEFRVKFEKSSSRLGRRWVYGRIYLVRGKSRQQRLL 289
           N SPHR+DCHVC  LLEFR+K E+S+SR GR WVYGRIYLVR +  +Q  L
Sbjct: 241 NKSPHRADCHVCGSLLEFRIKVEQSASRFGRGWVYGRIYLVRRRRNRQSWL 290

The following BLAST results are available for this feature:

BLAST of Carg20650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964680.1	7.4e-159	99.31	uncharacterized protein LOC111464688 [Cucurbita moschata]	[more]
XP_023519420.1	7.4e-159	99.31	uncharacterized protein LOC111782835 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022970554.1	8.4e-155	96.88	uncharacterized protein LOC111469496 isoform X1 [Cucurbita maxima]	[more]
XP_023519421.1	4.2e-154	99.28	uncharacterized protein LOC111782835 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022970555.1	4.8e-150	96.77	uncharacterized protein LOC111469496 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg20650 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59400.2	5.0e-93	61.28	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg20650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20650 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C6W2\|A0A1S3C6W2_CUCME	5.6e-139	86.94	PGR5-like protein 1A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497151 PE=4...	[more]
tr\|A0A0A0M0I2\|A0A0A0M0I2_CUCSA	1.1e-137	86.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523060 PE=4 SV=1	[more]
tr\|A0A2P5D667\|A0A2P5D667_9ROSA	6.2e-106	69.23	PGR5-like A protein OS=Trema orientalis OX=63057 GN=TorRG33x02_260670 PE=4 SV=1	[more]
tr\|A0A2P5DQJ6\|A0A2P5DQJ6_PARAD	2.4e-105	68.53	PGR5-like A protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_041810 PE=4 S...	[more]
tr\|A0A2I4EV31\|A0A2I4EV31_9ROSI	5.3e-105	69.07	PGR5-like protein 1B, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC1...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20650-RA	Carg20650-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31032	FAMILY NOT NAMED	coord: 13..285
None	No IPR available	PANTHER	PTHR31032:SF2	SUBFAMILY NOT NAMED	coord: 13..285

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20650	Cla008232	Watermelon (97103) v1	carwmB0376
Carg20650	Csa1G523060	Cucumber (Chinese Long) v2	carcuB0412
Carg20650	MELO3C020623	Melon (DHL92) v3.5.1	carmeB0388
Carg20650	ClCG03G001420	Watermelon (Charleston Gray)	carwcgB0375
Carg20650	CSPI01G23170	Wild cucumber (PI 183967)	carcpiB0415
Carg20650	Cucsa.117820	Cucumber (Gy14) v1	carcgyB0443
Carg20650	CmaCh01G006110	Cucurbita maxima (Rimu)	carcmaB0532
Carg20650	CmaCh13G001210	Cucurbita maxima (Rimu)	carcmaB0531
Carg20650	CmoCh01G006360	Cucurbita moschata (Rifu)	carcmoB0518
Carg20650	CmoCh13G001170	Cucurbita moschata (Rifu)	carcmoB0517
Carg20650	Lsi02G013500	Bottle gourd (USVL1VR-Ls)	carlsiB349
Carg20650	Cp4.1LG20g08460	Cucurbita pepo (Zucchini)	carcpeB0531
Carg20650	Cp4.1LG02g13520	Cucurbita pepo (Zucchini)	carcpeB0532
Carg20650	CsGy1G022680	Cucumber (Gy14) v2	carcgybB0390
Carg20650	MELO3C020623.2	Melon (DHL92) v3.6.1	carmedB0392
Carg20650	CsaV3_1G034350	Cucumber (Chinese Long) v3	carcucB0414
Carg20650	Cla97C03G052330	Watermelon (97103) v2	carwmbB0404
Carg20650	Bhi08G000508	Wax gourd	carwgoB0468

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20650	Carg12377	Silver-seed gourd	carcarB408

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20650	Silver-seed gourd	carcarB188
Carg20650	Silver-seed gourd	carcarB331
Carg20650	Silver-seed gourd	carcarB351
Carg20650	Cucumber (Gy14) v2	carcgybB0391
Carg20650	Cucumber (Gy14) v1	carcgyB0444
Carg20650	Cucurbita maxima (Rimu)	carcmaB0533
Carg20650	Cucurbita moschata (Rifu)	carcmoB0519
Carg20650	Cucurbita pepo (Zucchini)	carcpeB0535
Carg20650	Wild cucumber (PI 183967)	carcpiB0416
Carg20650	Cucumber (Chinese Long) v2	carcuB0413
Carg20650	Cucumber (Chinese Long) v3	carcucB0416
Carg20650	Bottle gourd (USVL1VR-Ls)	carlsiB348
Carg20650	Melon (DHL92) v3.5.1	carmeB0387
Carg20650	Melon (DHL92) v3.6.1	carmedB0391
Carg20650	Watermelon (Charleston Gray)	carwcgB0374
Carg20650	Watermelon (97103) v1	carwmB0377
Carg20650	Watermelon (97103) v2	carwmbB0403
Carg20650	Wax gourd	carwgoB0467