Carg27142 (gene) Silver-seed gourd

Overview
NameCarg27142
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNAJ heat shock protein
LocationCucurbita_argyrosperma_scaffold_195 : 200481 .. 205434 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAACGCAAGCATCAAGTACCATAAGGTATCCCTCTTTTCCCCTCTCTCAAATGAATATACAGTTATATACATTATTTGTTTGACTTAAATCACCCTTCTAGTGGTTTACTCAGACACAAAATGCAAGATCTATATCTATCTATTTATGTGTGTGTGTGTGTCCCTATCCATCCCTGTGCGAAACTGTTGCTTTTCCTTGTTCCCTGGACCTGGCTTGCATGTGCTGACACTTTATCGCTGGTTAATGTGATGGCAGGATGTTTGAGAAAGCCATCACTCATCATCTGAAGAAATCTAGACGAAAAAACCATGGGATGAAAACTAGCCAATTGTTTTGAATGATTGGCTACTCATGGAAGATGAAATATTGGCAATGTGAGGGTAGCTCAGAGAGTTCAGCCTCAACAGAGGCCCTCGTTGATGATTATCGCGCTATTTTATGACTGGTAAGCCTTTCGGATTCGATCTAGATTCTTTTTAGGATGTTGCAGTGTTAAAACTTCTATGTTCTGGTTCTCTTCTTTTAGCCATGTTGTTTGAAGTAGAGAAGATTTTAAACTAATTAGTGGAATCTGAACGATTAATTACTATACGATATGAACATAATACCCGATCTGGATTTTGTCAGCATTTTTCTCTGCTTGTTTGGATTTTCTTTTATCGTTTATTTTACCATTTAAAATGCTGAAAGTGCCTCACAATTTTTTGTCATTTTAACACTCACTGACATTTAATAACTAAATCATCTTTAACACCCATCCACATTTTAATAACTTCCTAAGAAAAAGCTGAACTCATTGACCTTCCCCTCAGTAACTCTACACATGGTCAAACAAAAGATTCTCACCCACCTTGAAACTCATTGATAGACTTTTGACTACTAATGGTCTCCTAGGACATTCAATAGTGCCGGTGTTCGAAGACTGAATAGACATACATTTGATCATTATCTCATTGTACATTTTATGGGCTACTTTAAATAGGGCCCAGACCCTTCCATTTTGTGAATATGTGATTGGACGACTCTGAATTTTTGCCTATGATAGAATACTGGTGGAAGAACATGCCCCTTTGTGGATGTTCGGGACATGGATTCATTAACAACCTCAGAAGGCTTAAAGAAATTGTCAAAAAAATGGAACAAGGAGGTTTTTGGATGATTTTTTTTTCCTTACATAAATTGCTCTTCTTAATCAAATGGAGGAAACTGACCCTATCACACTAGTTCAACATACCCATAAAAGAATTATGAAAGCTGATTTTATCTAGTTGGCAGTAAAGGAAGAGCAATCTTATAGACAAAAATGTAAAAAACGATGGCTTAAGGAGGGCAACATAAACTCTAGATTTTTCCATCCCATCATGGCCTCAAAGAAACAGAAAGAGTACCATCATAGAAATTCTATCGGCACAAGGTAGAAGTTAAGTCAATAAAGATGAACTTGTTTCAAAATTTGTGTCCTTGGACAATACCCTTATCGCATTTCCCCACGACTTTGATTGGAGCCCATCTGTTCAACAACAACCAGCCTCCTTTGATGTTGCTTTTACCGAAGAAGAGATGCTTCTATCGAAGAAGAAATTGGGAAGGCAATAAAGCTCTTGAGCTCTGGATCAGACAGTTTTACCTTAGAATTCTTTAAAAATTGTTGAAACATTATGAGAGTCGATATCACTAGTGTTCCAAATTTTTTTGTTAGATTGGAGTTGTCAATAGAAGCTTCAATGAAACATATATCTGTTTGATCACAAAGAAAATGGATACCCGCACTGTTGTCGAATTTCATCCCATACCCCCTTCGACCGGGCTATACAAAATTATAGCAAGGGTGCTATCATAATGTCTAAAAAAGGTTCTCCCTTTCACAAGCACTTGGCAATAGACAACATTTGTAGAGGGACGTCAGGTCCTTGATGCATCCCTCATGGCAAATGAATTTATAAACGGATGGAAAAGAAGAAAGAGAAAAGGTTTTGTCATCAAACTTGACCCAGAAAAAGCAGTTGACAAGGTCGATTGGACTCTCCTCGAAAACATTCTTGTAGCAAAAGGGTTTGACTCAAAACGGTTAGGGTGTATAAAAGGCGGCATCTCATCCACAAAATTCTCCGTCATCATTAAGGGAAGACCAATGGAGAAGATCTATGCTACTCGAGGTCTTCAACAAGGGGATCCACCATCCCTTTTTTTTCATAATGGTAATTGATTGCCTTAGTCATTTACTCACCAAGATTGAAAATAGAGGGCATATAAAGAAATCTTAGGTTGGTAATGAAGGTTACGTATCAACCCCCTTCAGTTTGCGAATGACATGATCCTCTTCTCTAATTTGTTAGATGTTTCCTCCATAAAAAACATGTTTGAGATGGTGAACACCTTCAAAAGATTCTTGGGACAAAACTTCAACGTTCAAAAAATAGAGATTATGGGTTGACGTTAGCATAGAGGATATTGAGGACTTCGCATAAATGTGGTTGTAAAATGGGTGAATGGCCGAATATGTCTATGGGATTGCCCTTAAACGGGAACCCCAAATCTTTCCCCTTTTTGAAGACCATTATTGAAAAAATAGAAAGAATATCACCATGGTCATCTTGTTACACTTCTAAAGGTAGAAGGCTCACTTAATACAAGCCACACAATCTAACTTTCCCACTTACTAATGTCTCTATTTGAAATGCCTAAGAAGAAAGTGGTTACGGAATTAGAAAAATTATTCAGAAACTATCGGTAGAAAAATGGCCTGCACCTCGTACGATGGAATACCATAAACCTCCCAGTTGAAAAGGGAGGACTCAACTTGTATTCAATTAAGAAGAGCTTTCCTTGCTAAATGGATATGGAGATATTAACACGAAGTCCCTACATTGTGGAGAAAACTTATAGAGACTAAATATACTCTCACATTATGAACACCTCGATCCCCCACGTGTATATAAAATAGCATGAAAACCTCATCACTAACTGAATTTGTCATAGGGTGGGTGATGGAGTTTTTTTGGACTGACTCGTGGATTGAAATCACCACACTTGCTATGCGGTATCCTCTTTTGTATAAACTCTCACAGTGCAAAATAACCAAGGTCAAGGAAACATGGAAAGATGAAATAAACTATGGGATCTAAAGCTCGGTAGGATCCTAAAGGATAATGAAGCTACGAAATGGATCGAATTGAGTTTTGACCTTGTGTCAATTATATTGTCTCAAGAAGTAGACTCATTGAAATGGCTTCCCTGTTAGACAGAGTCTTCTCCACACAATCTTTGATAATGAATATGGAGAGGCAATAAACCCCTTACTAGCAAAGACAATGTCACCCTGAAAAGTGAGGTTTTTCTTATGGGAAATTGTGCCTAAAGCCATGATGATATACTATTACCAAACTGGTGCCCATTATGTAGGAAAGAAACTGAATCTCAAAACCATGTATTTGTGAAGTGTACGTATAAACTTGTAATTTTTGGATGAAAAGACATCTCACTTTTCTTGGGGAGGTTAAAGAGTCGAGGGACATGAGCTTAACATACCACCCCTTCAATAATGCAAAACCTCTACTATGGACAAACCTTGTTATGACTTTCTTTTGGAATCTATAGGAAAAAGAAAAAAAGAATTCAAAAGTATTTACGATGAACACAAACTTACATTAGGCTGTTCGAAAATGTTGTTTACCACGCCATTTCTTGGTGTAAATTGTCTTGTACTTTTACTTCCTATATCATGACCCCCTCATGGTAAATTGAAAAAGTCTTTTGTAAGCATCATGGATAACATATACCTTTTGATTTCAAACATCGAAATTTATCAAAATTTTTAATGAATTGGGAAGATTAATAGATTTTTGACCAAATTGAGAAAAACCTGAAAAACTAGAATCCTTTAACTAGCCTAAAATAAAGTTGATTAAAAGCAATTTTTCTTTGATGAAACTCAGGCGGTTTAATTAAAAGGTCTATTTAAAAGTTTTTTTTTTGAAACATCTAAAGCTACATTAAATACTTAAAAGATTGTTTAAACTAAAAGTTATGCGAAACAGTTGCGATCTCATGATGTTCGTTGCACAGGCCTTGTTCTGGTAGGTCACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTAAATTTTGTTCTTGTGTTTTTATTACTAATATTTTAAATCGCTTAGTTTTGTTTCTTTGAATCAAATTGTGATAAGCTGTATAATGTGTCAGATGAGCTGGTTCTACTATTATTGTTCATAACTTGGAGATGCTAGCTCAGAACAGATTAAAAGGGCCTGCATGGAAAGAGTGCCATCCAGACTTGAGTGGCAATGATCCAGACTTCACGAATGGCTGCATGTTCATTAATGAAGTCTATGAGGTAGGATTTCAAATTCAAAGGATGCTATAAGCTTTGCATTATGAGAATGACAAATAAAATATATATACCATAATAAAAAAAAAAAAAATGGGGTGGAAGAGTTTTCACATACAAAATACACACACACACATACAATGCCTGATAAGAATTTATAGTGAGGGGGTTGCTCCTACACTCCAAGGGTCAATGTGGACTATCTGGGGCCAATCAACTACAACGATCGAGTTCAGCTTTTTTTCATTTAAAATATTACACATACTAGGCTTAGAGATGGGATTATAAACAATTCAAGTGACCTGTGGATGGTTTATTATACATTGCAGGTGCTTTGTGATCAATTGAAGTGGATGGTTTATGATGAAGTTCATGGATATGCTTTGACTTGAATCAACAACCCTTTCATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGATATGTCTTATGTGAGTCTTTACCTAGTTTATAGTACCCACACGCTTCAGTTGATGTTACCGTAATCTTTTCGTGATGTGTTCTCGTCATGACACAATGGACTTGGCAGCATCAGGCAAAGAGAGGTAAAGGTCA

mRNA sequence

ATGGGCAACGCAAGCATCAAGTACCATAAGATGCTAGCTCAGAACAGATTAAAAGGGCCTGCATGGAAAGAGTGCCATCCAGACTTGAGTGGCAATGATCCAGACTTCACGAATGGCTGCATGTTCATTAATGAAGTCTATGAGGTGCTTTGTGATCAATTGAAGTGGATGGTTTATGATGAAGTTCATGGATATGCTTTGACTTGAATCAACAACCCTTTCATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGATATGTCTTATGTGAGTCTTTACCTAGTTTATAGTACCCACACGCTTCAGTTGATGTTACCGTAATCTTTTCGTGATGTGTTCTCGTCATGACACAATGGACTTGGCAGCATCAGGCAAAGAGAGGTAAAGGTCA

Coding sequence (CDS)

ATGGGCAACGCAAGCATCAAGTACCATAAGATGCTAGCTCAGAACAGATTAAAAGGGCCTGCATGGAAAGAGTGCCATCCAGACTTGAGTGGCAATGATCCAGACTTCACGAATGGCTGCATGTTCATTAATGAAGTCTATGAGGTGCTTTGTGATCAATTGAAGTGGATGGTTTATGATGAAGTTCATGGATATGCTTTGACTTGA

Protein sequence

MGNASIKYHKMLAQNRLKGPAWKECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT
Homology
[Close]
BLAST of Carg27142 vs. NCBI nr
Match: XP_022952127.1 (chaperone protein dnaJ C76, chloroplastic [Cucurbita moschata] >XP_022952128.1 chaperone protein dnaJ C76, chloroplastic [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 90  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 135

[Close]
BLAST of Carg27142 vs. NCBI nr
Match: XP_022930763.1 (chaperone protein dnaJ C76, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 89  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 134

[Close]
BLAST of Carg27142 vs. NCBI nr
Match: XP_022988846.1 (chaperone protein dnaJ C76, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 86  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 131

[Close]
BLAST of Carg27142 vs. NCBI nr
Match: XP_022969167.1 (chaperone protein dnaJ C76, chloroplastic [Cucurbita maxima] >XP_022969169.1 chaperone protein dnaJ C76, chloroplastic [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 90  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 135

[Close]
BLAST of Carg27142 vs. NCBI nr
Match: XP_023530003.1 (chaperone protein dnaJ C76, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSG+DPD TN CMFINEVYEVL D ++ MVYDE+HGYALT
Sbjct: 89  KECHPDLSGDDPDTTNFCMFINEVYEVLSDPVQRMVYDEIHGYALT 134

[Close]
BLAST of Carg27142 vs. TAIR10
Match: AT2G42750.1 (DNAJ heat shock N-terminal domain-containing protein)

HSP 1 Score: 79.7 bits (195), Expect = 7.6e-16
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           K CHPDLSGNDP+ TN CMFIN++YE+L D ++ MVYDE+HGY +T
Sbjct: 101 KSCHPDLSGNDPETTNFCMFINDIYEILSDPVQRMVYDEIHGYTVT 146

[Close]
BLAST of Carg27142 vs. TrEMBL
Match: tr|B9SW34|B9SW34_RICCO (Expressed protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0323920 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.0e-14
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           KECHPDLSGNDPD TN CMFINEVY VL D ++ MVYDE+HGYALT
Sbjct: 90  KECHPDLSGNDPDTTNFCMFINEVYAVLSDPVQRMVYDEIHGYALT 135

[Close]
BLAST of Carg27142 vs. TrEMBL
Match: tr|A0A200QXU4|A0A200QXU4_9MAGN (3Fe-4S ferredoxin OS=Macleaya cordata OX=56857 GN=BVC80_1333g2 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           K CHPDLSGNDPD TN CMFINEVY VL D ++ MVYDE+HGYALT
Sbjct: 97  KACHPDLSGNDPDTTNFCMFINEVYAVLSDPVQRMVYDEIHGYALT 142

[Close]
BLAST of Carg27142 vs. TrEMBL
Match: tr|A0A2I0WNQ4|A0A2I0WNQ4_9ASPA (Chaperone protein dnaJ 10 OS=Dendrobium catenatum OX=906689 GN=ATJ10 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           K CHPDLSGNDP+ TN CMFINEVYEVL D ++ M+YDE+HGYAL+
Sbjct: 92  KSCHPDLSGNDPEVTNFCMFINEVYEVLSDPVQRMIYDEIHGYALS 137

[Close]
BLAST of Carg27142 vs. TrEMBL
Match: tr|A0A1S2YJI4|A0A1S2YJI4_CICAR (uncharacterized protein LOC101497771 isoform X1 OS=Cicer arietinum OX=3827 GN=LOC101497771 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           K CHPDLSGNDP+ TN C+FINEVYEVL D L+ M+YDE+HGY+LT
Sbjct: 97  KTCHPDLSGNDPEVTNFCIFINEVYEVLSDPLQRMIYDEIHGYSLT 142

[Close]
BLAST of Carg27142 vs. TrEMBL
Match: tr|A0A1S2YIX4|A0A1S2YIX4_CICAR (uncharacterized protein LOC101497771 isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101497771 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 23  KECHPDLSGNDPDFTNGCMFINEVYEVLCDQLKWMVYDEVHGYALT 69
           K CHPDLSGNDP+ TN C+FINEVYEVL D L+ M+YDE+HGY+LT
Sbjct: 97  KTCHPDLSGNDPEVTNFCIFINEVYEVLSDPLQRMIYDEIHGYSLT 142

The following BLAST results are available for this feature:
BLAST of Carg27142 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952127.15.8e-1480.43chaperone protein dnaJ C76, chloroplastic [Cucurbita moschata] >XP_022952128.1 c... [more]
XP_022930763.15.8e-1480.43chaperone protein dnaJ C76, chloroplastic-like [Cucurbita moschata][more]
XP_022988846.15.8e-1480.43chaperone protein dnaJ C76, chloroplastic-like [Cucurbita maxima][more]
XP_022969167.15.8e-1480.43chaperone protein dnaJ C76, chloroplastic [Cucurbita maxima] >XP_022969169.1 cha... [more]
XP_023530003.15.8e-1480.43chaperone protein dnaJ C76, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg27142 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42750.17.6e-1667.39DNAJ heat shock N-terminal domain-containing protein[more]
BLAST of Carg27142 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg27142 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|B9SW34|B9SW34_RICCO5.0e-1480.43Expressed protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0323920 PE=4 SV=... [more]
tr|A0A200QXU4|A0A200QXU4_9MAGN2.5e-1378.263Fe-4S ferredoxin OS=Macleaya cordata OX=56857 GN=BVC80_1333g2 PE=4 SV=1[more]
tr|A0A2I0WNQ4|A0A2I0WNQ4_9ASPA3.3e-1373.91Chaperone protein dnaJ 10 OS=Dendrobium catenatum OX=906689 GN=ATJ10 PE=4 SV=1[more]
tr|A0A1S2YJI4|A0A1S2YJI4_CICAR4.3e-1373.91uncharacterized protein LOC101497771 isoform X1 OS=Cicer arietinum OX=3827 GN=LO... [more]
tr|A0A1S2YIX4|A0A1S2YIX4_CICAR4.3e-1373.91uncharacterized protein LOC101497771 isoform X2 OS=Cicer arietinum OX=3827 GN=LO... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27142-RACarg27142-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR44579FAMILY NOT NAMEDcoord: 22..68
NoneNo IPR availablePANTHERPTHR44579:SF1SUBFAMILY NOT NAMEDcoord: 22..68
IPR036869Chaperone J-domain superfamilySUPERFAMILYSSF46565Chaperone J-domaincoord: 22..62

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27142CmoCh19G003520Cucurbita moschata (Rifu)carcmoB0450
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg27142Cucurbita maxima (Rimu)carcmaB0459