Carg12752 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCACAGATTTAGTCTTAATGACCTCCGACCAAAAAGGAGGCCTCCCCTTCCAAATAAATCTGATGTGGTATACGTCGAGGTAAGGGAAGGATTTCTTATTAGACTCTTAAGAGTGTTTATGGCTTTCTATGCTAAAAAGAGAGAAAGACGTTAATTATTGTGTGGGTTTTTGTATAACCCCACCTTTGTTTGACTTTCATTCCTCTCCATGAAAGCGGTGTATAAATCTAAAAGGATAACTGTGTTCTTTTTCTCTGATTCATTTGACCAGGATCTTGTTACACAAGTTCAACGTGCACTCTACGCAACGTTGTCTGGATTTGATGGCGCAAATGTTGAAGATGAGAATGATTTAGAAAGTCTCATCGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATCACCTCACAAGGCAGCGGAAGCTCGTCTGAAAGTGTCAAAGAAACTACTTACCCTATTCAGGGCCGGTAA ATGCACAGATTTAGTCTTAATGACCTCCGACCAAAAAGGAGGCCTCCCCTTCCAAATAAATCTGATGTGGTATACGTCGAGGATCTTGTTACACAAGTTCAACGTGCACTCTACGCAACGTTGTCTGGATTTGATGGCGCAAATGTTGAAGATGAGAATGATTTAGAAAGTCTCATCGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATCACCTCACAAGGCAGCGGAAGCTCGTCTGAAAGTGTCAAAGAAACTACTTACCCTATTCAGGGCCGGTAA ATGCACAGATTTAGTCTTAATGACCTCCGACCAAAAAGGAGGCCTCCCCTTCCAAATAAATCTGATGTGGTATACGTCGAGGATCTTGTTACACAAGTTCAACGTGCACTCTACGCAACGTTGTCTGGATTTGATGGCGCAAATGTTGAAGATGAGAATGATTTAGAAAGTCTCATCGAAGTGCAGTTTGAAGCATTGCAGAAAGCAATGAAGATCACCTCACAAGGCAGCGGAAGCTCGTCTGAAAGTGTCAAAGAAACTACTTACCCTATTCAGGGCCGGTAA MHRFSLNDLRPKRRPPLPNKSDVVYVEDLVTQVQRALYATLSGFDGANVEDENDLESLIEVQFEALQKAMKITSQGSGSSSESVKETTYPIQGR
BLAST of Carg12752 vs. NCBI nr
Match: XP_023518228.1 (short integuments 2, mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 137.5 bits (345), Expect = 2.3e-29 Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0
BLAST of Carg12752 vs. NCBI nr
Match: XP_022924906.1 (short integuments 2, mitochondrial [Cucurbita moschata] >XP_022924907.1 short integuments 2, mitochondrial [Cucurbita moschata] >XP_022924908.1 short integuments 2, mitochondrial [Cucurbita moschata]) HSP 1 Score: 136.7 bits (343), Expect = 4.0e-29 Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0
BLAST of Carg12752 vs. NCBI nr
Match: XP_022966362.1 (short integuments 2, mitochondrial [Cucurbita maxima]) HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28 Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0
BLAST of Carg12752 vs. NCBI nr
Match: XP_022156767.1 (short integuments 2, mitochondrial isoform X1 [Momordica charantia] >XP_022156768.1 short integuments 2, mitochondrial isoform X1 [Momordica charantia] >XP_022156769.1 short integuments 2, mitochondrial isoform X1 [Momordica charantia]) HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22 Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 0
BLAST of Carg12752 vs. NCBI nr
Match: XP_022156770.1 (short integuments 2, mitochondrial isoform X2 [Momordica charantia]) HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22 Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 0
BLAST of Carg12752 vs. TAIR10
Match: AT2G41670.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein) HSP 1 Score: 74.3 bits (181), Expect = 4.4e-14 Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0
BLAST of Carg12752 vs. Swiss-Prot
Match: sp|Q8L607|SIN2_ARATH (Short integuments 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIN2 PE=1 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 7.9e-13 Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0
BLAST of Carg12752 vs. TrEMBL
Match: tr|A0A1S3CCP6|A0A1S3CCP6_CUCME (Mitochondrial GTPase 1 OS=Cucumis melo OX=3656 GN=LOC103499512 PE=3 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 2.6e-21 Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0
BLAST of Carg12752 vs. TrEMBL
Match: tr|A0A1S3CEC4|A0A1S3CEC4_CUCME (short integuments 2, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499512 PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 2.6e-21 Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0
BLAST of Carg12752 vs. TrEMBL
Match: tr|V4U5Q1|V4U5Q1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006119mg PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 2.1e-18 Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of Carg12752 vs. TrEMBL
Match: tr|A0A067E3U5|A0A067E3U5_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0171871mg PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 2.1e-18 Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 0
BLAST of Carg12752 vs. TrEMBL
Match: tr|A0A2H5QL12|A0A2H5QL12_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_240060 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 4.7e-18 Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |