Carg24098-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCTGGATTTCGCCATTTCTTAGCTCAGGAGCTGAGAAATTCGCTTTATGACAGAGGGCGGGGAAGGTCTGAGCTAGATCTTTAATGGCGAGTAGTAACCACATTAACTCCACCGCTTATGCTGGAGATGTTCTTGACTCCGCTAAGCTCGGTCTTTCCTCCTCTGCTTCTTTCAAGGCTGCTCGTAAGAAGTCTAATGTTGCTGCTCCGCCAATTTCACGTGTTGCCTCTGATGTGGATGACATTATTACTCTCTTGCACGGCTCTGATCCAGTCCGCGTCGAGCTCAATCGTCTCGAGAATGAAGTTCGAGGTCTTTTTTCTCTCCTTTCTCTGTTTTCTTTTGTTTCGAATGCTGGTGGAAATGGTTGTTGTTCGTATGAATTTGATTTAATTTTGGGATTTTTGTTTCTTTCTTTTGTTTCGTTGGGATTGAATTTGGTGTTTTTCATCCGCGGTTTGTGTTTTGTTCTTTGTTTCCAGATTTGATTTGTTTGTTGCCTTCAGATGTTGGATCGATTTTGAATTATGTTCATCTACTTTTTGGATAATTTTACTGTTCTTCTGGAAATGGAATTCTGCAATGTACATTGTTATAAAGATTGGAGCCGTGTATTTGTTGGCGTGTTAATAATAATTTCTGCATCAGTAAATTAGGTCTTTTGTATACTTATATTCTGGGTTTATCAGTTAATAGTTGAGGGAAACCACTTGATATGGTTTGAAGGGAGTTTCAATGTGTTTTGGGTTGGAGGAAGGAATTCTTTATTTTCTAGCTTAATGATAAGATCCCACATCGGTTGGGGAGGAGAACTAAGCATTCTTTGTAGGAGTGGAAATCTCTCCCTAGCAGACACATTTTAAAAACCTTGAGGGAAAGCCCAAAGAGGATAATATGTGCTAGCGGTGTGCTTCAGCCATTACAAATGAGCCAGACATCGGGCAATATGCCAGCAAAGAGGCTAAGCCCCGAAGGAGGTGGACACGAGGCGATGTGGCAGCAAGGATGCTGGGCTTCGAAGGGGGATGGATTAGGCGTCCACATCGATTGGAAAAGGAAATGAGTGCCAGTGAGGACGCTGACCCCTGAAGGAGGTGGATCGTAAGATCCCACATTGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGATGTGGAAAACGTGGAAACCGAGCATTTTAAAAACCTTGAGAGCAAGCCCGGAAGGGAAAGCCCTAAAGAGGACAATATTTGCTAGTGGTGTGTTTCAGGATTTTTTTTTATTCCTGTTTTTTTTACCCACCAGTTTTGGATTGAAAAAAAAAAAAAAAAACAAAACAATAAAACAAAAGAAACGCCAGCACTCTATTAATGAGCATAAAACGAGAAGTCAACTTCTGGAGAAAAACAAAAGAATCTTTTTGGAAAGCATTCATTGGGCTAACGATCAAATTTCTTTGTGTGCTCTCCCACTGGAAGCTGTCAATCATGTAATATTTTTTAATATCAAAATTTTGCAAAGTTCCTATGGTTGCCAATTGCCATTACGCCCCGGATGGTATAGCTGGTTCCTTCTATATTTGTGCTAAAATATGTCAAACATCAATGTTGAAGGGGCCAACTCATTTCTCGTTATTTTGTTTCATGCTCAACTTTTGAACCTAACCTATTAGATTGTATTGACGGCTGTTATTTGTCAGTCTCCCAATTTTACGTTTTGAGTATGGGTTATAGCTTATTCACTGGCGGCGTGTTGACCCCTACGCCTAGGGAGCTTGAAATTGAACTGCCACCAATTAAGTCTTTTTATCTGAGGTAGTTATCAAGAGGACTAAATTGTGTGAAATGGGTATATAAGGTAAGGTTGGCTGTACCTAACATACTCCAATAACAATTGGAATCAACATTGATACGTTGGAAATAGAACTAATTGGCCTTTTCCAAGAGTTTACCTTGAGAATAGAACTTATTGGCTGTTTTTTTTTTACTCAATAACTGATTTTATGGCTCACATTGCATCTTTTTTCATGCTAATACGTTCCACAATGATCTTAAGCACATCTGGTTGAAAATTGTTGTAGTTCCACGTTGGCTAATCAAGGAGAAGATCACAGGTATATAAGTAAGGGACACTATGTTTATTGGTATGAGGCCTTTTGGAGAAATCAAAAGCAAATCCATGAGAGTTTATGATCAAAGTCGATAATATCATACCAATGTGGAAGATAATTGTTTCTAACATAGTATCAAAACCATGTTCTTATCTTAACTTAGTCATGTTAATGGACTTCTCAAGTGTCGAATAAAGAAATTGTGAGTCTCTAATGTGTAGTCATAGTAACTCAAGTGTCGAACAAAGATGAACTTTGTTTGAGGGCTCCAGAGAAGAGAGACTTCAGGGTGTATTTGTTCCAGGAGAGGATCCATTGTGTGTTGGAAATGTTAAATAGTCTTTTTTTTTTTCATGTCCTAAGAAGGAAGTATTGACAAGAATGAGAAGATTCTTAGGTTTCTATCAAGTACAATATAAGGAGCATATGACTTTGGTTTTCAAATCATTCCAATTAAAAGCTCAAGTACTAACTCTAGGTTTGTGATTGATATAAATCTTTTAGAGTGTTTTCGTAATTGAAGTCGGAGAGAAAATTTTGTGTGATTGCAATAGCTATTCAAATTGTGGATTTTTTTCTGGTGAGTTGTGGTTTTTCTCCAGTTTTGGAGCTTTTTTTCGTAAATTTTTGTGTTTCTTATTTTTGCTGTTTTCCTTTAATTTCTCAATTTTTTTTGTGTGCATATTCTGCTATAAAATTGGGGGTTTTCTTTTCCCCCAACATATTGTTATTGGATCATATTGAATATATATTTTTTTATATACGCAGATAAAGATAGGGAACTGGGAGAGGCTCTTGCTGAAGTTAAGTCATTAAAAACTTCAGAACGGCTTAAAGAGAAGGCTGTTGAAGAGGTACTATTTTTAGTCTTGTATCATCTTTTGTAGTTCTCTGTTGATCATTAA TCTGGATTTCGCCATTTCTTAGCTCAGGAGCTGAGAAATTCGCTTTATGACAGAGGGCGGGGAAGGTCTGAGCTAGATCTTTAATGGCGAGTAGTAACCACATTAACTCCACCGCTTATGCTGGAGATGTTCTTGACTCCGCTAAGCTCGGTCTTTCCTCCTCTGCTTCTTTCAAGGCTGCTCGTAAGAAGTCTAATGTTGCTGCTCCGCCAATTTCACGTGTTGCCTCTGATGTGGATGACATTATTACTCTCTTGCACGGCTCTGATCCAGTCCGCGTCGAGCTCAATCGTCTCGAGAATGAAGTTCGAGATAAAGATAGGGAACTGGGAGAGGCTCTTGCTGAAGTTAAGTCATTAAAAACTTCAGAACGGCTTAAAGAGAAGGCTGTTGAAGAGTTCTCTGTTGATCATTAA ATGGCGAGTAGTAACCACATTAACTCCACCGCTTATGCTGGAGATGTTCTTGACTCCGCTAAGCTCGGTCTTTCCTCCTCTGCTTCTTTCAAGGCTGCTCGTAAGAAGTCTAATGTTGCTGCTCCGCCAATTTCACGTGTTGCCTCTGATGTGGATGACATTATTACTCTCTTGCACGGCTCTGATCCAGTCCGCGTCGAGCTCAATCGTCTCGAGAATGAAGTTCGAGATAAAGATAGGGAACTGGGAGAGGCTCTTGCTGAAGTTAAGTCATTAAAAACTTCAGAACGGCTTAAAGAGAAGGCTGTTGAAGAGTTCTCTGTTGATCATTAA MASSNHINSTAYAGDVLDSAKLGLSSSASFKAARKKSNVAAPPISRVASDVDDIITLLHGSDPVRVELNRLENEVRDKDRELGEALAEVKSLKTSERLKEKAVEEFSVDH
BLAST of Carg24098-RA vs. NCBI nr
Match: XP_022932876.1 (microtubule-associated protein 70-2-like [Cucurbita moschata]) HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of Carg24098-RA vs. NCBI nr
Match: XP_023543827.1 (microtubule-associated protein 70-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 160.6 bits (405), Expect = 3.0e-36 Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of Carg24098-RA vs. NCBI nr
Match: XP_022967741.1 (microtubule-associated protein 70-2-like [Cucurbita maxima]) HSP 1 Score: 157.5 bits (397), Expect = 2.5e-35 Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0
BLAST of Carg24098-RA vs. NCBI nr
Match: XP_004144334.1 (PREDICTED: microtubule-associated protein 70-1 [Cucumis sativus]) HSP 1 Score: 150.2 bits (378), Expect = 4.1e-33 Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of Carg24098-RA vs. NCBI nr
Match: KGN54710.1 (hypothetical protein Csa_4G431900 [Cucumis sativus]) HSP 1 Score: 150.2 bits (378), Expect = 4.1e-33 Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of Carg24098-RA vs. TAIR10
Match: AT1G68060.1 (microtubule-associated proteins 70-1) HSP 1 Score: 82.4 bits (202), Expect = 1.9e-16 Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 0
BLAST of Carg24098-RA vs. TAIR10
Match: AT2G01750.2 (microtubule-associated proteins 70-3) HSP 1 Score: 81.3 bits (199), Expect = 4.2e-16 Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0
BLAST of Carg24098-RA vs. TAIR10
Match: AT1G14840.1 (microtubule-associated proteins 70-4) HSP 1 Score: 79.0 bits (193), Expect = 2.1e-15 Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0
BLAST of Carg24098-RA vs. TAIR10
Match: AT1G24764.1 (microtubule-associated proteins 70-2) HSP 1 Score: 64.7 bits (156), Expect = 4.1e-11 Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 0
BLAST of Carg24098-RA vs. Swiss-Prot
Match: sp|Q6Z746|MP702_ORYSJ (Microtubule-associated protein 70-2 OS=Oryza sativa subsp. japonica OX=39947 GN=MAP70.2 PE=2 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 6.2e-17 Identity = 48/86 (55.81%), Postives = 66/86 (76.74%), Query Frame = 0
BLAST of Carg24098-RA vs. Swiss-Prot
Match: sp|Q9C9X0|MP701_ARATH (Microtubule-associated protein 70-1 OS=Arabidopsis thaliana OX=3702 GN=MAP70.1 PE=1 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 3.4e-15 Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 0
BLAST of Carg24098-RA vs. Swiss-Prot
Match: sp|Q9ZUA3|MP703_ARATH (Microtubule-associated protein 70-3 OS=Arabidopsis thaliana OX=3702 GN=MAP70.3 PE=2 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 7.6e-15 Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0
BLAST of Carg24098-RA vs. Swiss-Prot
Match: sp|Q9LQU7|MP704_ARATH (Microtubule-associated protein 70-4 OS=Arabidopsis thaliana OX=3702 GN=MAP70.4 PE=1 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 3.8e-14 Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 0
BLAST of Carg24098-RA vs. Swiss-Prot
Match: sp|Q653N3|MP703_ORYSJ (Microtubule-associated protein 70-3 OS=Oryza sativa subsp. japonica OX=39947 GN=MAP70.3 PE=2 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 1.3e-11 Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 0
BLAST of Carg24098-RA vs. TrEMBL
Match: tr|A0A0A0KYG0|A0A0A0KYG0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G431900 PE=4 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 2.7e-33 Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of Carg24098-RA vs. TrEMBL
Match: tr|A0A1S3C1H4|A0A1S3C1H4_CUCME (microtubule-associated protein 70-2-like OS=Cucumis melo OX=3656 GN=LOC103495819 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 4.6e-33 Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 0
BLAST of Carg24098-RA vs. TrEMBL
Match: tr|A0A2P2J8E3|A0A2P2J8E3_RHIMU (Uncharacterized protein MANES_08G060700 OS=Rhizophora mucronata OX=61149 PE=4 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 4.0e-21 Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = 0
BLAST of Carg24098-RA vs. TrEMBL
Match: tr|A0A2P2J8E6|A0A2P2J8E6_RHIMU (Microtubule-associated protein 70-1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 4.0e-21 Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = 0
BLAST of Carg24098-RA vs. TrEMBL
Match: tr|A0A2I0J468|A0A2I0J468_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_028750 PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 6.9e-21 Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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