Carg22444-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCTCTCCCTCTCCCTCTCTGCCACTTCGATCAAATACCCTCCTGAATTTTTCAGTAAGTTTCTGTTCTCAAATCTTTAGCGATTAATTGATTTGGAATTTCAGGTTCTAAACTCCACGGAGTTCATGTATTTGCACTTGATATTATCCTCGCGGCTTTGTTTTTGGGTCCTTTTTCTTCGATGGTTTATGGGTTGTGGGAGTGAGTATTTGTAGTGGGTAATCGTGAAATTTGATGCCCTTTTATGCTTCTTTGTTTGGGAGATTGGTAAGAAAAAAGTTAGGGATGTTGTTTAAATGGAAGGCAAATATGTCTGTAGTTTTGTCTTTCTGCTGAAAAACGTGGATTGTAATTGAATGAGATGAACATTTGCTTTATGGATGTCTGAGGATTTTAATTGTATGAATAGCTTTTGAGTATGGTGACTTTGGGTCCTGTTGCTTTCCCTTCTTGAGTTACTTTTGTTTATGAAGATCGTATTGAAGTTTTAAAGTATTTACAGTTTGATGGCGTTTTTTTGAAGGGGTAAGCTCATCAATCAACTAAGTAGAGCGTTTTCTTGATTTAAATGTTTGCATAGGCCTCATACTGTCTCAGTTACAGCATTAGCTTGTGGCATGCCTACCTATGTTTGTATATTGTTGAGGATTGTTGTGAGGGAGTCCCACGGTTGGCTAATTAAGGGAATGATAATGAGTTTATAAGCAAGGAATACATCTCCATTGATATGAGGGCTTTTGGGGAAACTAAGAGCGAAACCATGAGTGTTTATGCTGAAAGTGGACAATACCATACCATTGTGGAGAGTTGTGATTCCTAACATGGTGTTAGAGTTATGCTTTTAACTTAGTTATGTCAATAGAATCCTTAAATGTCGAACAATGTAGTTGGGATCCTTGAAAGTGTAGTCAAAGTGACTCAAGTGTTGAACAAAGGGTTTACTTTGTTTGAGGGCTCTAGAGGAAGGAGTCGAGCCTTAAGTAAAGGGAGGCTGTTTGAGGGCTCTACAGGCTTCAGGGAGGCTCTATGGTTTACTTTGTTCGAGGGGAGGATTGTTGAGGATTGTTGGGAGGGAGTCCTACGTTGGCTAATTAAGGAAATGACAAAGGATGAGTAAGGAATACATCTATTGGTACGAGACCTTATGGGAAAACCAAAAGTAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATACCATACCATCGTAGAGAGCTGTGATTCCTATTAAATACATCTTCTTTTGCTAATTTTTCTTTTCTGCAAGATCGATCTTCATTTATTCTTTTACTTTCATCTTGGTTATGGCGTTTTCTGAAAACGGTTTGGTTGTTGATTGCAGTGGAATTTGGGGTTGATGGTGATAGTGAGGTGGTGGGAAATTCGACTCTGGTGGATAGTAAACCTCTTGATGAAAACGAAACAGGTGTAAGTTCTATAGAAAGGATATTCGATGAGGACCGAGACGAGAAAATAATACAAGATTCATCTGGAAGGAATGCCATTTTGGATTCAGTTCCTGGATTGCCAGTAGTTCAAGCAGATGAGCCCTATGTTGGTCAGGAATTTGAAAATGAGGCAGCAGCTCATGCATTTTACAATGCTTATGCTACACGTGTGGGGTTCGTAATTCGTGTTAGCAAGCTTTCACGATCGAGACGTGATGGGACGGCTATTGGTCGAGCACTAGTTTGCAACAAAGAGGGGTTCAGGATGCCTGACAAGCGGGAAAAGATCGTGAGGCAGAGGGCCGAGACGAGGGTAGGTTGCAGGGCAATGATTTTGGTGAGAAAAGTGAACTCTGGCAAATGGGTTGTCACTAAATTTGTGAAGGAGCATACTCATCCTTTGTCACCTGGGAAAGGTCGAAGAGATTGCATATATGATCAATATCCTGTAAGTTCTTCTTCCATACACCAATGTTCAAATCCTGATGCACTAACACATGTTCTGACAAAATGAGATTCTCTTTGAAACCGGAATTTTGTTTATCTTTGTTGCTTTATTTGGGGCCTGGTTCAATTGTTAATCATCTGTTTGTATATATTACTCTGGGGAAATGGTGGGAGATGAAGGGAAATCCTCGAACAGTTGTCGGTTTCTTGTTCGTAGAAGATTTAGTAAGCTAGTGCTCACGATCCATGTCTCAAGGAGACACCGAGAATCTTTGTTAATCCTTCGAGATTGGAAGGGCGGTGCTTTATAGTTTTCTTTGGGAGGCGGCCCTCACTCCCTCCCCCACCCCAAATCCACTGTTAGTAGATATTATCTGTTTTGGCCCGTTACGTATCGCCGTCAGTCTCACGGTTTTAAAACGAGTCTGCTAAGGAGAGGTTTCCATACCCTTATAAGGAAATGGTTCGTTACTCTCTTTAGCTTTTAACTTGTAAGTATGTTACATCTTATGTGAGGTGGAGACATTCGGAACTGCTGAGCTAAGCTCGTGATGGCACTTTTGGCTTCTTTTATAAGTACTGTGAGATTCCATATTCGTTGGAGAGGAAAACGAAACATTCCTTATAAGAGTGTAGAAACCTCTCCCTAACATATGCGTTTTAAAATCGTGAAGTTGAAGGTGATACGTAATGGGTCAAATCAGACAATATCTGCTAGCAGTAGGCTTGGACTGTTACAAATGGTATTAGAGCCAGACACAAGCTAGTGTGCCAACAAGGACGTTGGGTCTCCAAGGGGATGGATTGTGAGACCCCACATCGGTTGGAGAGGGGAACGAAACATTTTTTTACAAGAGTGTGGAAACTTCTCCCTATAAGCCGCGTTTTAAAACCATGAGGCTTATAGCGAAACGTAACGAGCCAAATCAGACAATATCTGCTAGCGATGGGCTTGGCTATTACAAATGGTATTAGAGCTAGACACCAGGCGGTGTGCCAGTGAGGACACTGGGCCCCCAAGGGGGGTGGATTGTGAGATCCCACATCGATTGGAGAGGGAACGAAGCATTCCTTATAAGAGCGTGGAAACCTCTCCCTAACAAACGCATTTTAAAACCATGAGGTTAACAGCGAGTATGTAACGGGCCAAGTCAGACAATATCTACTAGCGGTAGACTTGGACTATTACAAATACCATCCTTTCAAACATTAGAGGTTTTAAATCATAAAACAATTCCTTCTTTCCTTGACTGACATGAAGCACTATGTTGATGGTGCTATTAGAGAGCTCAATTATATGACTCTGGTTCTCATAGTCTCTTGAAGTTTTACACTTCTTAGTGTTATATACTAATGGAAAATGGCTTATAACAGTGCATTCATTGTATTACTCACTCAACTTTTGCCATCCTTGCATTGCAGAACGAACACGATAAGATACGCGAACTGTCTCAGCAGCTTGCAATTGAGAAAAAGCGATCGGCGACATATAAAAGGCATCTAGAAGTAATATTCGAATACATCGATGAGCATAACGATAACCTGTCGAGAAAGATCCAACATATAGTAGACAATGTGAAGGAGATGGAAAGCATAGAACAGCAGAATCATAGATAGTATTTGGGTAAACTTTTATACTCAATGATGATGGTAGAGTTGCTGGATGGATGAAGAACTTGTTAGTTTAGAATTCATTGTGATATGTTCTTCATCATTTAGACGTCAGTTCAGTGTCACAAAAAATGGAGTATATTGCCCATGGTGTTCATTGCTTGTAAATCTCAATGTATGTCATGTTTTGTACAGCATTCAAACCATTTGTATCTTATTTTCATTAGTCTTAGTTTTGTTTTCTTCCTCTTTTATTCATTTTCGAT CCCTCTCCCTCTCCCTCTCTGCCACTTCGATCAAATACCCTCCTGAATTTTTCATGGAATTTGGGGTTGATGGTGATAGTGAGGTGGTGGGAAATTCGACTCTGGTGGATAGTAAACCTCTTGATGAAAACGAAACAGGTGTAAGTTCTATAGAAAGGATATTCGATGAGGACCGAGACGAGAAAATAATACAAGATTCATCTGGAAGGAATGCCATTTTGGATTCAGTTCCTGGATTGCCAGTAGTTCAAGCAGATGAGCCCTATGTTGGTCAGGAATTTGAAAATGAGGCAGCAGCTCATGCATTTTACAATGCTTATGCTACACGTGTGGGGTTCGTAATTCGTGTTAGCAAGCTTTCACGATCGAGACGTGATGGGACGGCTATTGGTCGAGCACTAGTTTGCAACAAAGAGGGGTTCAGGATGCCTGACAAGCGGGAAAAGATCGTGAGGCAGAGGGCCGAGACGAGGGTAGGTTGCAGGGCAATGATTTTGGTGAGAAAAGTGAACTCTGGCAAATGGGTTGTCACTAAATTTGTGAAGGAGCATACTCATCCTTTGTCACCTGGGAAAGGTCGAAGAGATTGCATATATGATCAATATCCTAACGAACACGATAAGATACGCGAACTGTCTCAGCAGCTTGCAATTGAGAAAAAGCGATCGGCGACATATAAAAGGCATCTAGAAGTAATATTCGAATACATCGATGAGCATAACGATAACCTGTCGAGAAAGATCCAACATATAGTAGACAATGTGAAGGAGATGGAAAGCATAGAACAGCAGAATCATAGATAGTATTTGGGTAAACTTTTATACTCAATGATGATGGTAGAGTTGCTGGATGGATGAAGAACTTGTTAGTTTAGAATTCATTGTGATATGTTCTTCATCATTTAGACGTCAGTTCAGTGTCACAAAAAATGGAGTATATTGCCCATGGTGTTCATTGCTTGTAAATCTCAATGTATGTCATGTTTTGTACAGCATTCAAACCATTTGTATCTTATTTTCATTAGTCTTAGTTTTGTTTTCTTCCTCTTTTATTCATTTTCGAT ATGGAATTTGGGGTTGATGGTGATAGTGAGGTGGTGGGAAATTCGACTCTGGTGGATAGTAAACCTCTTGATGAAAACGAAACAGGTGTAAGTTCTATAGAAAGGATATTCGATGAGGACCGAGACGAGAAAATAATACAAGATTCATCTGGAAGGAATGCCATTTTGGATTCAGTTCCTGGATTGCCAGTAGTTCAAGCAGATGAGCCCTATGTTGGTCAGGAATTTGAAAATGAGGCAGCAGCTCATGCATTTTACAATGCTTATGCTACACGTGTGGGGTTCGTAATTCGTGTTAGCAAGCTTTCACGATCGAGACGTGATGGGACGGCTATTGGTCGAGCACTAGTTTGCAACAAAGAGGGGTTCAGGATGCCTGACAAGCGGGAAAAGATCGTGAGGCAGAGGGCCGAGACGAGGGTAGGTTGCAGGGCAATGATTTTGGTGAGAAAAGTGAACTCTGGCAAATGGGTTGTCACTAAATTTGTGAAGGAGCATACTCATCCTTTGTCACCTGGGAAAGGTCGAAGAGATTGCATATATGATCAATATCCTAACGAACACGATAAGATACGCGAACTGTCTCAGCAGCTTGCAATTGAGAAAAAGCGATCGGCGACATATAAAAGGCATCTAGAAGTAATATTCGAATACATCGATGAGCATAACGATAACCTGTCGAGAAAGATCCAACATATAGTAGACAATGTGAAGGAGATGGAAAGCATAGAACAGCAGAATCATAGATAG MEFGVDGDSEVVGNSTLVDSKPLDENETGVSSIERIFDEDRDEKIIQDSSGRNAILDSVPGLPVVQADEPYVGQEFENEAAAHAFYNAYATRVGFVIRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMILVRKVNSGKWVVTKFVKEHTHPLSPGKGRRDCIYDQYPNEHDKIRELSQQLAIEKKRSATYKRHLEVIFEYIDEHNDNLSRKIQHIVDNVKEMESIEQQNHR
BLAST of Carg22444-RA vs. NCBI nr
Match: XP_022955369.1 (protein FAR1-RELATED SEQUENCE 6-like [Cucurbita moschata]) HSP 1 Score: 491.5 bits (1264), Expect = 1.7e-135 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
BLAST of Carg22444-RA vs. NCBI nr
Match: XP_023526909.1 (protein FAR1-RELATED SEQUENCE 6-like, partial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 486.5 bits (1251), Expect = 5.4e-134 Identity = 245/249 (98.39%), Postives = 249/249 (100.00%), Query Frame = 0
BLAST of Carg22444-RA vs. NCBI nr
Match: XP_022979903.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucurbita maxima]) HSP 1 Score: 484.2 bits (1245), Expect = 2.7e-133 Identity = 245/249 (98.39%), Postives = 247/249 (99.20%), Query Frame = 0
BLAST of Carg22444-RA vs. NCBI nr
Match: XP_022138245.1 (protein FAR1-RELATED SEQUENCE 6 [Momordica charantia]) HSP 1 Score: 475.3 bits (1222), Expect = 1.3e-130 Identity = 240/250 (96.00%), Postives = 248/250 (99.20%), Query Frame = 0
BLAST of Carg22444-RA vs. NCBI nr
Match: XP_008453933.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 6 [Cucumis melo]) HSP 1 Score: 473.4 bits (1217), Expect = 4.8e-130 Identity = 239/250 (95.60%), Postives = 248/250 (99.20%), Query Frame = 0
BLAST of Carg22444-RA vs. TAIR10
Match: AT3G59470.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 297.4 bits (760), Expect = 8.5e-81 Identity = 144/199 (72.36%), Postives = 172/199 (86.43%), Query Frame = 0
BLAST of Carg22444-RA vs. TAIR10
Match: AT3G07500.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 156.0 bits (393), Expect = 3.0e-38 Identity = 87/207 (42.03%), Postives = 136/207 (65.70%), Query Frame = 0
BLAST of Carg22444-RA vs. TAIR10
Match: AT2G43280.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 132.5 bits (332), Expect = 3.6e-31 Identity = 77/183 (42.08%), Postives = 113/183 (61.75%), Query Frame = 0
BLAST of Carg22444-RA vs. TAIR10
Match: AT4G12850.1 (Far-red impaired responsive (FAR1) family protein) HSP 1 Score: 122.5 bits (306), Expect = 3.7e-28 Identity = 66/177 (37.29%), Postives = 104/177 (58.76%), Query Frame = 0
BLAST of Carg22444-RA vs. TAIR10
Match: AT4G38180.1 (FAR1-related sequence 5) HSP 1 Score: 117.1 bits (292), Expect = 1.6e-26 Identity = 63/108 (58.33%), Postives = 74/108 (68.52%), Query Frame = 0
BLAST of Carg22444-RA vs. Swiss-Prot
Match: sp|Q9SZL8|FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 2.8e-25 Identity = 63/108 (58.33%), Postives = 74/108 (68.52%), Query Frame = 0
BLAST of Carg22444-RA vs. Swiss-Prot
Match: sp|Q3E7I5|FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 1.2e-18 Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 0
BLAST of Carg22444-RA vs. Swiss-Prot
Match: sp|Q9M8J3|FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 3.3e-18 Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 0
BLAST of Carg22444-RA vs. Swiss-Prot
Match: sp|Q9SSQ4|FRS6_ARATH (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=FRS6 PE=2 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 5.5e-13 Identity = 60/181 (33.15%), Postives = 88/181 (48.62%), Query Frame = 0
BLAST of Carg22444-RA vs. Swiss-Prot
Match: sp|Q5UBY2|FRS1_ARATH (Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=FRS1 PE=1 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12 Identity = 46/151 (30.46%), Postives = 68/151 (45.03%), Query Frame = 0
BLAST of Carg22444-RA vs. TrEMBL
Match: tr|A0A1S3BY81|A0A1S3BY81_CUCME (protein FAR1-RELATED SEQUENCE 6 OS=Cucumis melo OX=3656 GN=LOC103494508 PE=4 SV=1) HSP 1 Score: 473.4 bits (1217), Expect = 3.1e-130 Identity = 239/250 (95.60%), Postives = 248/250 (99.20%), Query Frame = 0
BLAST of Carg22444-RA vs. TrEMBL
Match: tr|A0A0A0KZ37|A0A0A0KZ37_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017090 PE=4 SV=1) HSP 1 Score: 471.9 bits (1213), Expect = 9.1e-130 Identity = 237/250 (94.80%), Postives = 248/250 (99.20%), Query Frame = 0
BLAST of Carg22444-RA vs. TrEMBL
Match: tr|A0A2C9WE96|A0A2C9WE96_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G080200 PE=4 SV=1) HSP 1 Score: 390.2 bits (1001), Expect = 3.5e-105 Identity = 196/249 (78.71%), Postives = 224/249 (89.96%), Query Frame = 0
BLAST of Carg22444-RA vs. TrEMBL
Match: tr|A0A2P4KZH7|A0A2P4KZH7_QUESU (Protein far1-related sequence 5 OS=Quercus suber OX=58331 GN=CFP56_14836 PE=4 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 1.3e-104 Identity = 196/252 (77.78%), Postives = 227/252 (90.08%), Query Frame = 0
BLAST of Carg22444-RA vs. TrEMBL
Match: tr|A0A251R003|A0A251R003_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G196400 PE=4 SV=1) HSP 1 Score: 382.5 bits (981), Expect = 7.3e-103 Identity = 197/252 (78.17%), Postives = 224/252 (88.89%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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