Carg23704 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23704
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone H2B
Location	Cucurbita_argyrosperma_scaffold_142 : 276069 .. 276497 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAGGCCGAGAAGAAACCCGCTGAGAAGAAGCCGGCAGCGGAGGAGAAGAAGGCGGAGAAAGCACCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTGCCCAAAGACGCCGCCGATAAGAAAAAGAAAAGAGCGAAGAAGAGCATCGAGACATACAAGATTTACATCTTTAAGGTACTCAAGCAAGTTCATCCTGATATCGGAATCTCCAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAGCTCGCTCAGGAATCGTCGAAGCTCGCTCGCTACAACAAGAAGCCGACCATTACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGTTGGCTAAGCACGCCGTTTCTGAAGGTACTAAGGCGGTTACCAAGTTTACTAGCTCTTAG

mRNA sequence

ATGGCGCCAAAGGCCGAGAAGAAACCCGCTGAGAAGAAGCCGGCAGCGGAGGAGAAGAAGGCGGAGAAAGCACCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTGCCCAAAGACGCCGCCGATAAGAAAAAGAAAAGAGCGAAGAAGAGCATCGAGACATACAAGATTTACATCTTTAAGGTACTCAAGCAAGTTCATCCTGATATCGGAATCTCCAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAGCTCGCTCAGGAATCGTCGAAGCTCGCTCGCTACAACAAGAAGCCGACCATTACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGTTGGCTAAGCACGCCGTTTCTGAAGGTACTAAGGCGGTTACCAAGTTTACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGGCCGAGAAGAAACCCGCTGAGAAGAAGCCGGCAGCGGAGGAGAAGAAGGCGGAGAAAGCACCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTGCCCAAAGACGCCGCCGATAAGAAAAAGAAAAGAGCGAAGAAGAGCATCGAGACATACAAGATTTACATCTTTAAGGTACTCAAGCAAGTTCATCCTGATATCGGAATCTCCAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAGCTCGCTCAGGAATCGTCGAAGCTCGCTCGCTACAACAAGAAGCCGACCATTACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGTTGGCTAAGCACGCCGTTTCTGAAGGTACTAAGGCGGTTACCAAGTTTACTAGCTCTTAG

Protein sequence

MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAADKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of Carg23704 vs. NCBI nr
Match: XP_004139453.1 (PREDICTED: histone H2B.7-like [Cucumis sativus] >KGN64858.1 Histone H2B [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 9.2e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Carg23704 vs. NCBI nr
Match: XP_011654070.1 (PREDICTED: histone H2B.7 [Cucumis sativus] >XP_011654073.1 PREDICTED: histone H2B.7 [Cucumis sativus] >KGN64852.1 Histone H2B [Cucumis sativus] >KGN64854.1 Histone H2B [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 9.2e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Carg23704 vs. NCBI nr
Match: XP_016903018.1 (PREDICTED: LOW QUALITY PROTEIN: histone H2B.7-like [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 9.2e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Carg23704 vs. NCBI nr
Match: XP_022152883.1 (histone H2B.7 [Momordica charantia])

HSP 1 Score: 192.6 bits (488), Expect = 9.2e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Carg23704 vs. NCBI nr
Match: XP_022964641.1 (histone H2B.7-like [Cucurbita moschata] >XP_022970349.1 histone H2B.7-like [Cucurbita maxima] >XP_023519436.1 histone H2B.7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.6 bits (488), Expect = 9.2e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Carg23704 vs. TAIR10
Match: AT5G02570.1 (Histone superfamily protein)

HSP 1 Score: 174.9 bits (442), Expect = 3.6e-44
Identity = 129/142 (90.85%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEK P          XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKAP----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 132

[Close]

BLAST of Carg23704 vs. TAIR10
Match: AT1G07790.1 (Histone superfamily protein)

HSP 1 Score: 174.1 bits (440), Expect = 6.2e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 118

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Carg23704 vs. TAIR10
Match: AT2G28720.1 (Histone superfamily protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-43
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 62  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 121

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 122 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Carg23704 vs. TAIR10
Match: AT5G59910.1 (Histone superfamily protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-43
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Carg23704 vs. TAIR10
Match: AT3G46030.1 (Histone superfamily protein)

HSP 1 Score: 172.2 bits (435), Expect = 2.3e-43
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 56  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 115

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 116 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Carg23704 vs. Swiss-Prot
Match: sp|Q9LZ45|H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 174.9 bits (442), Expect = 6.5e-43
Identity = 129/142 (90.85%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEK P          XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKAP----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 132

[Close]

BLAST of Carg23704 vs. Swiss-Prot
Match: sp|Q9LQQ4|H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 118

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Carg23704 vs. Swiss-Prot
Match: sp|P40283|H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Carg23704 vs. Swiss-Prot
Match: sp|Q1S9I9|H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 118

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Carg23704 vs. Swiss-Prot
Match: sp|Q9SI96|H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 53  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 112
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 62  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 121

Query: 113 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 122 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Carg23704 vs. TrEMBL
Match: tr|A0A0A0LV55|A0A0A0LV55_CUCSA (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.1e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Carg23704 vs. TrEMBL
Match: tr|A0A1S4E463|A0A1S4E463_CUCME (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103500805 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.1e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Carg23704 vs. TrEMBL
Match: tr|A0A0A0LST8|A0A0A0LST8_CUCSA (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132680 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.1e-46
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Carg23704 vs. TrEMBL
Match: tr|A0A2G2ZYA2|A0A2G2ZYA2_CAPAN (Histone H2B OS=Capsicum annuum OX=4072 GN=LOC107863599 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.3e-43
Identity = 123/142 (86.62%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPK EKKPAEKKPAA  XXXXXXXXXXXXXXXXXXXX              ETYKIYIF
Sbjct: 1   MAPKVEKKPAEKKPAAXXXXXXXXXXXXXXXXXXXXXXGAAGDKKKRVKKSVETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Carg23704 vs. TrEMBL
Match: tr|A0A1U8G135|A0A1U8G135_CAPAN (Histone H2B OS=Capsicum annuum OX=4072 GN=T459_09055 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.3e-43
Identity = 123/142 (86.62%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60
           MAPK EKKPAEKKPAA  XXXXXXXXXXXXXXXXXXXX              ETYKIYIF
Sbjct: 1   MAPKVEKKPAEKKPAAXXXXXXXXXXXXXXXXXXXXXXGAAGDKKKRVKKSVETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

The following BLAST results are available for this feature:

BLAST of Carg23704 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139453.1	9.2e-46	100.00	PREDICTED: histone H2B.7-like [Cucumis sativus] >KGN64858.1 Histone H2B [Cucumis...	[more]
XP_011654070.1	9.2e-46	100.00	PREDICTED: histone H2B.7 [Cucumis sativus] >XP_011654073.1 PREDICTED: histone H2...	[more]
XP_016903018.1	9.2e-46	100.00	PREDICTED: LOW QUALITY PROTEIN: histone H2B.7-like [Cucumis melo]	[more]
XP_022152883.1	9.2e-46	100.00	histone H2B.7 [Momordica charantia]	[more]
XP_022964641.1	9.2e-46	100.00	histone H2B.7-like [Cucurbita moschata] >XP_022970349.1 histone H2B.7-like [Cucu...	[more]

BLAST of Carg23704 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02570.1	3.6e-44	90.85	Histone superfamily protein	[more]
AT1G07790.1	6.2e-44	100.00	Histone superfamily protein	[more]
AT2G28720.1	1.4e-43	98.89	Histone superfamily protein	[more]
AT5G59910.1	1.4e-43	98.89	Histone superfamily protein	[more]
AT3G46030.1	2.3e-43	98.89	Histone superfamily protein	[more]

BLAST of Carg23704 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LZ45\|H2B9_ARATH	6.5e-43	90.85	Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3	[more]
sp\|Q9LQQ4\|H2B1_ARATH	1.1e-42	100.00	Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3	[more]
sp\|P40283\|H2B11_ARATH	2.5e-42	98.89	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
sp\|Q1S9I9\|H2B1_MEDTR	2.5e-42	98.89	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
sp\|Q9SI96\|H2B3_ARATH	2.5e-42	98.89	Histone H2B.3 OS=Arabidopsis thaliana OX=3702 GN=At2g28720 PE=1 SV=3	[more]

BLAST of Carg23704 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV55\|A0A0A0LV55_CUCSA	6.1e-46	100.00	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132130 PE=3 SV=1	[more]
tr\|A0A1S4E463\|A0A1S4E463_CUCME	6.1e-46	100.00	Histone H2B OS=Cucumis melo OX=3656 GN=LOC103500805 PE=3 SV=1	[more]
tr\|A0A0A0LST8\|A0A0A0LST8_CUCSA	6.1e-46	100.00	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132680 PE=3 SV=1	[more]
tr\|A0A2G2ZYA2\|A0A2G2ZYA2_CAPAN	8.3e-43	86.62	Histone H2B OS=Capsicum annuum OX=4072 GN=LOC107863599 PE=3 SV=1	[more]
tr\|A0A1U8G135\|A0A1U8G135_CAPAN	8.3e-43	86.62	Histone H2B OS=Capsicum annuum OX=4072 GN=T459_09055 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold
IPR000558	Histone_H2B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23704-RA	Carg23704-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 126..139 score: 92.65 coord: 74..94 score: 75.74 coord: 96..113 score: 76.51 coord: 113..126 score: 92.45 coord: 55..73 score: 80.55
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 45..141 e-value: 1.1E-72 score: 257.5
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 1..142
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 110..132
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 2..142 e-value: 2.0E-57 score: 194.6
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 27..142
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 6..118 e-value: 4.3E-22 score: 78.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR23428:SF97	HISTONE H2B.11-RELATED	coord: 1..142

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23704	ClCG01G013820	Watermelon (Charleston Gray)	carwcgB0160

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23704	Cucumber (Gy14) v2	carcgybB0180
Carg23704	Cucumber (Gy14) v1	carcgyB0205
Carg23704	Cucurbita maxima (Rimu)	carcmaB0222
Carg23704	Cucurbita maxima (Rimu)	carcmaB0223
Carg23704	Cucurbita moschata (Rifu)	carcmoB0233
Carg23704	Cucurbita moschata (Rifu)	carcmoB0234
Carg23704	Cucurbita pepo (Zucchini)	carcpeB0239
Carg23704	Cucurbita pepo (Zucchini)	carcpeB0240
Carg23704	Wild cucumber (PI 183967)	carcpiB0192
Carg23704	Cucumber (Chinese Long) v2	carcuB0185
Carg23704	Cucumber (Chinese Long) v3	carcucB0192
Carg23704	Bottle gourd (USVL1VR-Ls)	carlsiB149
Carg23704	Melon (DHL92) v3.5.1	carmeB0171
Carg23704	Melon (DHL92) v3.6.1	carmedB0174
Carg23704	Watermelon (97103) v1	carwmB0157
Carg23704	Watermelon (97103) v2	carwmbB0173
Carg23704	Wax gourd	carwgoB0216