Carg09324-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTGTGAAGGGACGCGAAGGCAAAGCTTTTACAAAAGAGACAGAAACTGGAAAAGCCGATATGCTTTTCGGGTCGTTAAACACTTCTATCCCAAATTTTTTGTAATTGGTAAATAAAAACCCTCAAATCCTCTTCACTTTCTGCTTCTGTTCTTCATATTTAAGTAAATTTTAAGCAATCTGTCCAGATCTTTCCTATGAATTCTCGCCGTCATCAATGCTTGCTTGAACATTCAACTTTTAGGTCTGTAATTTGATGGCTGTCTTATCATTCTTTATGTATTGTATTTTATACCCTTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTGCATAAAAAATGGTTGAAAATTTTGATTAGTTGCTATATTCTGGTGTTGCTGTAGTTGAAGTGCTTTAGCCTTGTGGGTTGTCCTGCGTTCACGGGCATAGATTCTTTGCCTCTCGCTCTCTTGCCCTCGTAATCCCTCTTTTTGTTGCTCCCTCTGTGGCATTATGAACTGAAGGGCTATGTCAGCTCAGAGCTCGTTTTCTGCATCGATGCTTTAATCTCTTGTGGATTCTTCTTTGCCCATAAAGATTTCTTGCCTTTTTCTTCCTTTTTTGAGATGCCTTTCACTTTTTTTAGTATTTGAGGACTTTGGAGGCTGTTTATGGGTTGTGATATCAGGAGTAGCCAATGGAAAATTCATGGGTTTTAGTTCCATTTCAGCCCTCCCAAGTGCATATAAATACAGTTGGTCAATTCTAAAACTCTTCATTGCAGGAACTAATTCCAACGCCCAAGTTGTTGCCTGTCTTGCTTCCAACATTTTTGTGGAAATACAATGAGCTATAACAGCTCTGCTATGGGTTCTGGTTTGTTCACTTTCTGCTCATTTTGTTTTATTGGTTTACTGGCCATCAAGCTAAACTAGCTAGCTTTCATTTTTGCTCCATTATGTCAGGTAGTAGAACAGGCAGGATGAGCTTTGAGTTTGGGAGGACCCATGTGGTCAGGCCTAAAGGGAAGCATCAGGCAACTATTGTTTGGTTACATGGCCTTGGTGATAAGGGGTCAAGGTACTAATGGCTTATCTTCTTTACGTTCTCCTTCCTGTTTAGCCAGCTTATTAGAGTTATTTTGCTAGTTTCTGGTTGACTTACTTCGATTGAGATTAAGAAGAAACTTTGAGGTACTACGTGAGATCCCACATCAGTAGGAGAGGGGAACGAAACATTGCTCATAAGGGTGTGGAAACCTCTCCCTACCAAAGGGGCTCAGAAGGGAAAGCCCAAAGAAGACAATATCTGCTAGTGGTGAGTTTGGGCTGTTACAAATGGTATCAAAGCCAGACACCGGGCGGTGTGCTAGTGAGGACGCTAGGTCTCCAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGAGAATGAAACATTACTTATAAGGGTGTGGAAACCTCTCTCTACCAGACGCGTTTTAAAACCTTAAAGACAAACCTGTAAAGGAAAGTCCAAAGAGGACAATAACGGCCCGCCGTGGGTTTGGGCTATTACATACTTGAGTATAAACACTCAATGAACTCTATGGCGCATTACATGTAACTTGCAAACTTTCCATCCTAATTAGTGGGTTATATCTGAGCAGAGGACTTTCTTTTTGTCTTCCATGCCAAAAGTAAGGGAAGAAGTGGCTGAGTGAGAAAATGTCAATGTCTTGCCCTATCTTCTTGTGTATGTTCATATATAGAAAGTTTTAAAAATTCTATATGCCTTTACTAGAGATTCTTATTCTGATTTCTTTTTAAGTGGGAAGGTAACGTCATGTTTTGTGTCCTTTATAATTAGAAAAAAAATCAAAATCAATATAAAATAATGCTCATTATCATATGCTAGCTGATATCAGACATTTACATCATTAAAGGAGGGCTGGTTTCTTCATTATTGGAAGCCTATCTGGACATCTAATTTATTATTTATTTACTTCTAAATTTTTTCAGTTGGTCTCAGCTCTTGGAAACTCTTCCTCTACCAAACGTAAGGCTACTTAACATAGTAACCTTGATTGTCATTAAGTTTTGGGATTTGTTTAATATGATCAATTAACATAATAATTACGAATTCTGTTGCAGATTAAGTGGATTTGTCCTACTGCTCCTACTCGTCCTGTGACGTTATTTGGTGGATTTCCTTGCACTGCATGTAAGACTATCCAAATTTCATAAGTAGATTTATTAAAATTATGAGCCAAATTCCTCGTATGAAAACGATATATTTATTCTTGGAATTAGTTTAAATTATGAGTTACTCTGCCGTTTCGTATCAGGGTTTGATGTGGGAGATATTTCAGAGGAGTCTCCTGATGATTTAGAAGGCTTGGATGCTGCAGCATCGCATGTTGCTAATCTTTTGTCTACAGAACCTGCTGATAGTATGTTGTTTCTTCTTGAAAAGCTTTTAAACTCCCCCCAGCTGACTTGCTGTTTGTCATTTAATCACTGAACTTAATCATTGGTGTGATACTCCTCTGGTTGGTCACGTATTAGATTACCCGTTATTGTTGTGTCAAGGACTCGAACCGGTAGTTCTCATTTAAAACTATTTCATATATACGGTTTTGAAACGAAGAACAATTATGAATTGTATGTAGGGTAGGTATAGATAGAGGTTTCATCTACCTTCTCATATCGTTTTTACAGATGATACTTGGTGTTTGGCATACAAATTTGTCATATTCTCACTCTTTTTCTTACTAACAGTTAAACTGGGTATTGGAGGCTTCAGTATGGGTGCTGCAACTGCTATTTACTCTGCGTCACGCCGTATTCTTGGGCAATATGGAAATGGAAACCTATACCCTATTAACCTTAGTGCAGTTGTTGGGCTTAGTGGCTGGCTTCCCTGTTCAAGGTTTGATTTTTGTTTGTGAATTATGAAGAAGCCGAAACACACAGTGCACGGTCGTGAGAAAGCCTACACGGGTGGCCTTTGTTCTTTATCAAAGCCTTTTTTTGTTGTAGATCTTTGAGGAACCAGGTCAGTGTGTCACACGAAGCTGCAAGGCGCGCTGCGTCCCTGCCCATTTTACTCTGTCATGGTTCAGGTACACTGCTAGTTTACGAGTTCAAGCATTAATGCACTCTTGTGAGAACTAATTTCTCTCAATTCCCTTAATCCTATTGAATTTTACTGAGCGGTTGGTTACAGGTGACGATGTCGTAGCTTACAAACACGGGGAGAAATCTGCACATACATTAAGTTCATCTGGATTTAGCAATCTAACATTTAAATCCTATAACGGGTATGTTCGTATCTCGACTTTCTAGTGCTTCTCGTTTTGTATGTCTGATAATAAGTAACAAATAAGATGGGATCTTGCAATGCAGGCTGGGCCATTACACCATTCCTGAGGAGATGGATGTTGTTTGTAATTGGCTGACAGTCGTTTTGGGGCTCGATGGCTTACGGTTGGTCGATCACTGA GTGTGAAGGGACGCGAAGGCAAAGCTTTTACAAAAGAGACAGAAACTGGAAAAGCCGATATGCTTTTCGGGTCGTTAAACACTTCTATCCCAAATTTTTTGTAATTGGAACTAATTCCAACGCCCAAGTTGTTGCCTGTCTTGCTTCCAACATTTTTGTGGAAATACAATGAGCTATAACAGCTCTGCTATGGGTTCTGGTAGTAGAACAGGCAGGATGAGCTTTGAGTTTGGGAGGACCCATGTGGTCAGGCCTAAAGGGAAGCATCAGGCAACTATTGTTTGGTTACATGGCCTTGGTGATAAGGGGTCAAGTTGGTCTCAGCTCTTGGAAACTCTTCCTCTACCAAACATTAAGTGGATTTGTCCTACTGCTCCTACTCGTCCTGTGACGTTATTTGGTGGATTTCCTTGCACTGCATGGTTTGATGTGGGAGATATTTCAGAGGAGTCTCCTGATGATTTAGAAGGCTTGGATGCTGCAGCATCGCATGTTGCTAATCTTTTGTCTACAGAACCTGCTGATATTAAACTGGGTATTGGAGGCTTCAGTATGGGTGCTGCAACTGCTATTTACTCTGCGTCACGCCGTATTCTTGGGCAATATGGAAATGGAAACCTATACCCTATTAACCTTAGTGCAGTTGTTGGGCTTAGTGGCTGGCTTCCCTGTTCAAGATCTTTGAGGAACCAGGTCAGTGTGTCACACGAAGCTGCAAGGCGCGCTGCGTCCCTGCCCATTTTACTCTGTCATGGTTCAGGTGACGATGTCGTAGCTTACAAACACGGGGAGAAATCTGCACATACATTAAGTTCATCTGGATTTAGCAATCTAACATTTAAATCCTATAACGGGCTGGGCCATTACACCATTCCTGAGGAGATGGATGTTGTTTGTAATTGGCTGACAGTCGTTTTGGGGCTCGATGGCTTACGGTTGGTCGATCACTGA ATGAGCTATAACAGCTCTGCTATGGGTTCTGGTAGTAGAACAGGCAGGATGAGCTTTGAGTTTGGGAGGACCCATGTGGTCAGGCCTAAAGGGAAGCATCAGGCAACTATTGTTTGGTTACATGGCCTTGGTGATAAGGGGTCAAGTTGGTCTCAGCTCTTGGAAACTCTTCCTCTACCAAACATTAAGTGGATTTGTCCTACTGCTCCTACTCGTCCTGTGACGTTATTTGGTGGATTTCCTTGCACTGCATGGTTTGATGTGGGAGATATTTCAGAGGAGTCTCCTGATGATTTAGAAGGCTTGGATGCTGCAGCATCGCATGTTGCTAATCTTTTGTCTACAGAACCTGCTGATATTAAACTGGGTATTGGAGGCTTCAGTATGGGTGCTGCAACTGCTATTTACTCTGCGTCACGCCGTATTCTTGGGCAATATGGAAATGGAAACCTATACCCTATTAACCTTAGTGCAGTTGTTGGGCTTAGTGGCTGGCTTCCCTGTTCAAGATCTTTGAGGAACCAGGTCAGTGTGTCACACGAAGCTGCAAGGCGCGCTGCGTCCCTGCCCATTTTACTCTGTCATGGTTCAGGTGACGATGTCGTAGCTTACAAACACGGGGAGAAATCTGCACATACATTAAGTTCATCTGGATTTAGCAATCTAACATTTAAATCCTATAACGGGCTGGGCCATTACACCATTCCTGAGGAGATGGATGTTGTTTGTAATTGGCTGACAGTCGTTTTGGGGCTCGATGGCTTACGGTTGGTCGATCACTGA MSYNSSAMGSGSRTGRMSFEFGRTHVVRPKGKHQATIVWLHGLGDKGSSWSQLLETLPLPNIKWICPTAPTRPVTLFGGFPCTAWFDVGDISEESPDDLEGLDAAASHVANLLSTEPADIKLGIGGFSMGAATAIYSASRRILGQYGNGNLYPINLSAVVGLSGWLPCSRSLRNQVSVSHEAARRAASLPILLCHGSGDDVVAYKHGEKSAHTLSSSGFSNLTFKSYNGLGHYTIPEEMDVVCNWLTVVLGLDGLRLVDH
BLAST of Carg09324-RA vs. NCBI nr
Match: XP_022961761.1 (acyl-protein thioesterase 2-like [Cucurbita moschata]) HSP 1 Score: 533.5 bits (1373), Expect = 4.0e-148 Identity = 259/260 (99.62%), Postives = 259/260 (99.62%), Query Frame = 0
BLAST of Carg09324-RA vs. NCBI nr
Match: XP_022996560.1 (acyl-protein thioesterase 2-like [Cucurbita maxima] >XP_022996561.1 acyl-protein thioesterase 2-like [Cucurbita maxima] >XP_022996562.1 acyl-protein thioesterase 2-like [Cucurbita maxima] >XP_022996563.1 acyl-protein thioesterase 2-like [Cucurbita maxima]) HSP 1 Score: 528.5 bits (1360), Expect = 1.3e-146 Identity = 255/260 (98.08%), Postives = 257/260 (98.85%), Query Frame = 0
BLAST of Carg09324-RA vs. NCBI nr
Match: XP_023545446.1 (acyl-protein thioesterase 2-like [Cucurbita pepo subsp. pepo] >XP_023545447.1 acyl-protein thioesterase 2-like [Cucurbita pepo subsp. pepo] >XP_023545448.1 acyl-protein thioesterase 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 525.4 bits (1352), Expect = 1.1e-145 Identity = 254/260 (97.69%), Postives = 256/260 (98.46%), Query Frame = 0
BLAST of Carg09324-RA vs. NCBI nr
Match: XP_004138733.1 (PREDICTED: acyl-protein thioesterase 2 [Cucumis sativus] >XP_011649812.1 PREDICTED: acyl-protein thioesterase 2 [Cucumis sativus] >XP_011649813.1 PREDICTED: acyl-protein thioesterase 2 [Cucumis sativus] >XP_011649814.1 PREDICTED: acyl-protein thioesterase 2 [Cucumis sativus] >KGN62923.1 hypothetical protein Csa_2G380030 [Cucumis sativus]) HSP 1 Score: 515.4 bits (1326), Expect = 1.1e-142 Identity = 245/260 (94.23%), Postives = 255/260 (98.08%), Query Frame = 0
BLAST of Carg09324-RA vs. NCBI nr
Match: XP_008445177.1 (PREDICTED: acyl-protein thioesterase 2-like [Cucumis melo] >XP_008445178.1 PREDICTED: acyl-protein thioesterase 2-like [Cucumis melo] >XP_008445179.1 PREDICTED: acyl-protein thioesterase 2-like [Cucumis melo] >XP_008445180.1 PREDICTED: acyl-protein thioesterase 2-like [Cucumis melo] >XP_016899931.1 PREDICTED: acyl-protein thioesterase 2-like [Cucumis melo]) HSP 1 Score: 513.5 bits (1321), Expect = 4.3e-142 Identity = 245/260 (94.23%), Postives = 252/260 (96.92%), Query Frame = 0
BLAST of Carg09324-RA vs. TAIR10
Match: AT5G20060.2 (alpha/beta-Hydrolases superfamily protein) HSP 1 Score: 373.6 bits (958), Expect = 9.7e-104 Identity = 174/254 (68.50%), Postives = 212/254 (83.46%), Query Frame = 0
BLAST of Carg09324-RA vs. TAIR10
Match: AT1G52700.1 (alpha/beta-Hydrolases superfamily protein) HSP 1 Score: 372.9 bits (956), Expect = 1.7e-103 Identity = 178/256 (69.53%), Postives = 212/256 (82.81%), Query Frame = 0
BLAST of Carg09324-RA vs. TAIR10
Match: AT3G15650.2 (alpha/beta-Hydrolases superfamily protein) HSP 1 Score: 362.1 bits (928), Expect = 2.9e-100 Identity = 178/275 (64.73%), Postives = 212/275 (77.09%), Query Frame = 0
BLAST of Carg09324-RA vs. TAIR10
Match: AT1G52695.1 (alpha/beta-Hydrolases superfamily protein) HSP 1 Score: 160.6 bits (405), Expect = 1.3e-39 Identity = 93/223 (41.70%), Postives = 123/223 (55.16%), Query Frame = 0
BLAST of Carg09324-RA vs. TAIR10
Match: AT1G52470.1 (alpha/beta-Hydrolases superfamily protein) HSP 1 Score: 129.8 bits (325), Expect = 2.4e-30 Identity = 81/241 (33.61%), Postives = 122/241 (50.62%), Query Frame = 0
BLAST of Carg09324-RA vs. Swiss-Prot
Match: sp|O95372|LYPA2_HUMAN (Acyl-protein thioesterase 2 OS=Homo sapiens OX=9606 GN=LYPLA2 PE=1 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.7e-28 Identity = 79/225 (35.11%), Postives = 120/225 (53.33%), Query Frame = 0
BLAST of Carg09324-RA vs. Swiss-Prot
Match: sp|Q9WTL7|LYPA2_MOUSE (Acyl-protein thioesterase 2 OS=Mus musculus OX=10090 GN=Lypla2 PE=1 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 3.7e-28 Identity = 78/225 (34.67%), Postives = 120/225 (53.33%), Query Frame = 0
BLAST of Carg09324-RA vs. Swiss-Prot
Match: sp|Q9QYL8|LYPA2_RAT (Acyl-protein thioesterase 2 OS=Rattus norvegicus OX=10116 GN=Lypla2 PE=1 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 3.7e-28 Identity = 78/225 (34.67%), Postives = 120/225 (53.33%), Query Frame = 0
BLAST of Carg09324-RA vs. Swiss-Prot
Match: sp|Q54T49|APT11_DICDI (Acyl-protein thioesterase 1 homolog 1 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0282005 PE=2 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 5.9e-26 Identity = 70/227 (30.84%), Postives = 119/227 (52.42%), Query Frame = 0
BLAST of Carg09324-RA vs. Swiss-Prot
Match: sp|P0CL95|APTH1_CRYNB (Acyl-protein thioesterase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=CNBF2260 PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 5.0e-25 Identity = 74/247 (29.96%), Postives = 119/247 (48.18%), Query Frame = 0
BLAST of Carg09324-RA vs. TrEMBL
Match: tr|A0A0A0LM90|A0A0A0LM90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380030 PE=4 SV=1) HSP 1 Score: 515.4 bits (1326), Expect = 7.5e-143 Identity = 245/260 (94.23%), Postives = 255/260 (98.08%), Query Frame = 0
BLAST of Carg09324-RA vs. TrEMBL
Match: tr|A0A1S4DVB8|A0A1S4DVB8_CUCME (acyl-protein thioesterase 2-like OS=Cucumis melo OX=3656 GN=LOC103488285 PE=4 SV=1) HSP 1 Score: 513.5 bits (1321), Expect = 2.9e-142 Identity = 245/260 (94.23%), Postives = 252/260 (96.92%), Query Frame = 0
BLAST of Carg09324-RA vs. TrEMBL
Match: tr|B9IKU8|B9IKU8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G030200v3 PE=4 SV=1) HSP 1 Score: 458.4 bits (1178), Expect = 1.1e-125 Identity = 215/254 (84.65%), Postives = 237/254 (93.31%), Query Frame = 0
BLAST of Carg09324-RA vs. TrEMBL
Match: tr|A0A2K2A818|A0A2K2A818_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G251100v3 PE=4 SV=1) HSP 1 Score: 458.0 bits (1177), Expect = 1.4e-125 Identity = 215/256 (83.98%), Postives = 235/256 (91.80%), Query Frame = 0
BLAST of Carg09324-RA vs. TrEMBL
Match: tr|A0A2P5DUI3|A0A2P5DUI3_9ROSA (Phospholipase/carboxylesterase/thioesterase OS=Trema orientalis OX=63057 GN=TorRG33x02_241300 PE=4 SV=1) HSP 1 Score: 454.1 bits (1167), Expect = 2.1e-124 Identity = 213/256 (83.20%), Postives = 237/256 (92.58%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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