Carg04985 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTGTTAGGTGGCCAAGGCTTTTAACGCCCACACACCTGTCTCAGATTATTAGGAAGCAGAACAATCCTTTCACAGCTTACCAACTGTTCAATGAAGCCAAATGTAGGTATCCAAATTATCAGCACAATGGTCCGGTGTACGCCGCAATGATCAATATACTTGGAAACTCGGGTAGAATTTCCGAGATGAGGGAAGTGATAGATCAGATGAAAGTTGACTCTTGTCAGTGCAAGGATTCTATATTTTCATTTGCAATTAAAACGTATGCTAGTCATGGATTATTGGAAGAAGGTATATCTCTGTTTAAAAGCCTTGGGGGATTTAACTGTACCGATAGAACACAAACTTTCAATACCCTTTTGGAAATACTCTTGAATGAATCTCAGCTCGATGCTGCTTGTCAGCTTTTTCAGCAGAGTTCATTTGGTTGGGAAGTGAAATCCAGGACTCAGTCATTGAATTTGCTAATGCAATCTCTTTGTCAAAGAGGCCAATCTGAACTTGCTTTACATGTCTTTAAAGAAATGGATTACCAAAGTTGCTATCCTAATAGGCTGAGTTATTTGATTCTAATGAAAGGACTGTGTCAAGATGGTAAGCTTCATGAGGCCATCCATTTATTGTATTCCATGTTCTGGAGGATTTCTCGAAGGGGTAGCGGAGGGGACATAGTAATTTACAGAACCCTTCTGTTTGCTTTGTGTGATAATGGAGAGATTGAGCAAGCTGTGGAAATACTAGGCAAGATCTTGAAGAAAGGACTGAAAGCCCCTAAGCGAGCTCATTACTTGATTGACCTCAACTACTGCAGGATTAGCAAGCTCACCGTCACGGAAATCAAGTGTTTAATCAATGAAGCTTTAATCAAAGGTGGAATTCCCAGTTCAGATAGTTACTGTGCCATGGCTATCGATCTATATAACGAAAACGAGACTGATCAGGGAGATAAAGTTGTTAGCCACATGCTAGCTAAAGGCTTTTGGCCACCATCCTCAGTCTATGAGGCGAAAGCAGCTGCATTATGCAAAGAAGGGAAAGTTGATGATGCAGTGAAAGTAATTGAAGAGGAAACGGTGAAGGGAAGTTGCGTTCCAACCGTTGCGTTGTATAACATCGTTCTGAACGGTCTTTGTAGGGTGGGCAAGTCAACAGTGGCTATGGAGTTCTTGAAGAAAATGGTAAAGCAGGTTGGTCTTGTTGCAGACAAGGAGACTTATAGCACTTTAGTACATGGTCTTTGTCGTGAGAATAGATACACTGAAGCATGTAAGTTGTTGGAGGAGATGGTTATCAAATCACATTGGCCTTGTTCTAACACATTCAATACACTTATCAGAGGTCTTTGCTCGGTTGGAAAACCATATAAAGCAGTGATGTGCTTGGAAGAAATGATTAGCCAAGGCCAATTGCCTGAACTTTCTGTCTGGAATGCTTTGGTTTCATCTTTGTGTTTCAATGTGGCTGACACTGATATGTGGTCTAAGGTCTTACGACAGATACGAAGTTGTTGATGTTCTGTGCCAGAGTATGTACAGTAAGATATAAATCTCATTTTGGTACCAGATTTTTACATTGATTCAATACTTTCAAGTATTCCTAAACTTTAAAAATAATCATTTCGATCTGGATTGTTAATAATTTAGGTCTGCGGTGTTTTCGTTAGACGGTGTTTGTTAGTAGTGTCATCCTCCCCATTGGCTATATGGGTAGGTTGCCCCTCGCTGCTGCGTTTTGTTAGGCTATGGATTATAGGAACAAATGTAGTTGAGTTAGATAGCAGGCGGGTTACTTGTTTCATTGTACCGAGATGTGAGGTGCAGGTGGTGATGATCATCTTGGGGTATGCGCGGGAGCCCTTGATAGACACTCTAGGACCTGTCAATGCTCGTGAAAGTCCGAGTCAATCCTCCATTCATTCAACCAAAGGTGTGGATAACGAGGCCACCTTTACAGGTATGCGCAGGAGCCCTTGA ATGACTGTTAGGTGGCCAAGGCTTTTAACGCCCACACACCTGTCTCAGATTATTAGGAAGCAGAACAATCCTTTCACAGCTTACCAACTGTTCAATGAAGCCAAATGTAGGTATCCAAATTATCAGCACAATGGTCCGGTGTACGCCGCAATGATCAATATACTTGGAAACTCGGGTAGAATTTCCGAGATGAGGGAAGTGATAGATCAGATGAAAGTTGACTCTTGTCAGTGCAAGGATTCTATATTTTCATTTGCAATTAAAACGTATGCTAGTCATGGATTATTGGAAGAAGGTATATCTCTGTTTAAAAGCCTTGGGGGATTTAACTGTACCGATAGAACACAAACTTTCAATACCCTTTTGGAAATACTCTTGAATGAATCTCAGCTCGATGCTGCTTGTCAGCTTTTTCAGCAGAGTTCATTTGGTTGGGAAGTGAAATCCAGGACTCAGTCATTGAATTTGCTAATGCAATCTCTTTGTCAAAGAGGCCAATCTGAACTTGCTTTACATGTCTTTAAAGAAATGGATTACCAAAGTTGCTATCCTAATAGGCTGAGTTATTTGATTCTAATGAAAGGACTGTGTCAAGATGGTAAGCTTCATGAGGCCATCCATTTATTGTATTCCATGTTCTGGAGGATTTCTCGAAGGGGTAGCGGAGGGGACATAGTAATTTACAGAACCCTTCTGTTTGCTTTGTGTGATAATGGAGAGATTGAGCAAGCTGTGGAAATACTAGGCAAGATCTTGAAGAAAGGACTGAAAGCCCCTAAGCGAGCTCATTACTTGATTGACCTCAACTACTGCAGGATTAGCAAGCTCACCGTCACGGAAATCAAGTGTTTAATCAATGAAGCTTTAATCAAAGGTGGAATTCCCAGTTCAGATAGTTACTGTGCCATGGCTATCGATCTATATAACGAAAACGAGACTGATCAGGGAGATAAAGTTGTTAGCCACATGCTAGCTAAAGGCTTTTGGCCACCATCCTCAGTCTATGAGGCGAAAGCAGCTGCATTATGCAAAGAAGGGAAAGTTGATGATGCAGTGAAAGTAATTGAAGAGGAAACGGTGAAGGGAAGTTGCGTTCCAACCGTTGCGTTGTATAACATCGTTCTGAACGGTCTTTGTAGGGTGGGCAAGTCAACAGTGGCTATGGAGTTCTTGAAGAAAATGGTAAAGCAGGTTGGTCTTGTTGCAGACAAGGAGACTTATAGCACTTTAGTACATGGTCTTTGTCGTGAGAATAGATACACTGAAGCATGTAAGTTGTTGGAGGAGATGGTTATCAAATCACATTGGCCTTGTTCTAACACATTCAATACACTTATCAGAGGTCTTTGCTCGGTTGGAAAACCATATAAAGCAGTGATGTGCTTGGAAGAAATGATTAGCCAAGGCCAATTGCCTGAACTTTCTGTCTGGAATGCTTTGGTTTCATCTTTGTGTTTCAATGTGGCTGACACTGATATGTGGTCTAAGGTGGTGATGATCATCTTGGGGTATGCGCGGGAGCCCTTGATAGACACTCTAGGACCTGTCAATGCTCGTGAAAGTCCGAGTCAATCCTCCATTCATTCAACCAAAGGTGTGGATAACGAGGCCACCTTTACAGGTATGCGCAGGAGCCCTTGA ATGACTGTTAGGTGGCCAAGGCTTTTAACGCCCACACACCTGTCTCAGATTATTAGGAAGCAGAACAATCCTTTCACAGCTTACCAACTGTTCAATGAAGCCAAATGTAGGTATCCAAATTATCAGCACAATGGTCCGGTGTACGCCGCAATGATCAATATACTTGGAAACTCGGGTAGAATTTCCGAGATGAGGGAAGTGATAGATCAGATGAAAGTTGACTCTTGTCAGTGCAAGGATTCTATATTTTCATTTGCAATTAAAACGTATGCTAGTCATGGATTATTGGAAGAAGGTATATCTCTGTTTAAAAGCCTTGGGGGATTTAACTGTACCGATAGAACACAAACTTTCAATACCCTTTTGGAAATACTCTTGAATGAATCTCAGCTCGATGCTGCTTGTCAGCTTTTTCAGCAGAGTTCATTTGGTTGGGAAGTGAAATCCAGGACTCAGTCATTGAATTTGCTAATGCAATCTCTTTGTCAAAGAGGCCAATCTGAACTTGCTTTACATGTCTTTAAAGAAATGGATTACCAAAGTTGCTATCCTAATAGGCTGAGTTATTTGATTCTAATGAAAGGACTGTGTCAAGATGGTAAGCTTCATGAGGCCATCCATTTATTGTATTCCATGTTCTGGAGGATTTCTCGAAGGGGTAGCGGAGGGGACATAGTAATTTACAGAACCCTTCTGTTTGCTTTGTGTGATAATGGAGAGATTGAGCAAGCTGTGGAAATACTAGGCAAGATCTTGAAGAAAGGACTGAAAGCCCCTAAGCGAGCTCATTACTTGATTGACCTCAACTACTGCAGGATTAGCAAGCTCACCGTCACGGAAATCAAGTGTTTAATCAATGAAGCTTTAATCAAAGGTGGAATTCCCAGTTCAGATAGTTACTGTGCCATGGCTATCGATCTATATAACGAAAACGAGACTGATCAGGGAGATAAAGTTGTTAGCCACATGCTAGCTAAAGGCTTTTGGCCACCATCCTCAGTCTATGAGGCGAAAGCAGCTGCATTATGCAAAGAAGGGAAAGTTGATGATGCAGTGAAAGTAATTGAAGAGGAAACGGTGAAGGGAAGTTGCGTTCCAACCGTTGCGTTGTATAACATCGTTCTGAACGGTCTTTGTAGGGTGGGCAAGTCAACAGTGGCTATGGAGTTCTTGAAGAAAATGGTAAAGCAGGTTGGTCTTGTTGCAGACAAGGAGACTTATAGCACTTTAGTACATGGTCTTTGTCGTGAGAATAGATACACTGAAGCATGTAAGTTGTTGGAGGAGATGGTTATCAAATCACATTGGCCTTGTTCTAACACATTCAATACACTTATCAGAGGTCTTTGCTCGGTTGGAAAACCATATAAAGCAGTGATGTGCTTGGAAGAAATGATTAGCCAAGGCCAATTGCCTGAACTTTCTGTCTGGAATGCTTTGGTTTCATCTTTGTGTTTCAATGTGGCTGACACTGATATGTGGTCTAAGGTGGTGATGATCATCTTGGGGTATGCGCGGGAGCCCTTGATAGACACTCTAGGACCTGTCAATGCTCGTGAAAGTCCGAGTCAATCCTCCATTCATTCAACCAAAGGTGTGGATAACGAGGCCACCTTTACAGGTATGCGCAGGAGCCCTTGA MTVRWPRLLTPTHLSQIIRKQNNPFTAYQLFNEAKCRYPNYQHNGPVYAAMINILGNSGRISEMREVIDQMKVDSCQCKDSIFSFAIKTYASHGLLEEGISLFKSLGGFNCTDRTQTFNTLLEILLNESQLDAACQLFQQSSFGWEVKSRTQSLNLLMQSLCQRGQSELALHVFKEMDYQSCYPNRLSYLILMKGLCQDGKLHEAIHLLYSMFWRISRRGSGGDIVIYRTLLFALCDNGEIEQAVEILGKILKKGLKAPKRAHYLIDLNYCRISKLTVTEIKCLINEALIKGGIPSSDSYCAMAIDLYNENETDQGDKVVSHMLAKGFWPPSSVYEAKAAALCKEGKVDDAVKVIEEETVKGSCVPTVALYNIVLNGLCRVGKSTVAMEFLKKMVKQVGLVADKETYSTLVHGLCRENRYTEACKLLEEMVIKSHWPCSNTFNTLIRGLCSVGKPYKAVMCLEEMISQGQLPELSVWNALVSSLCFNVADTDMWSKVVMIILGYAREPLIDTLGPVNARESPSQSSIHSTKGVDNEATFTGMRRSP
BLAST of Carg04985 vs. NCBI nr
Match: XP_022959953.1 (pentatricopeptide repeat-containing protein At1g05600 [Cucurbita moschata] >XP_022959954.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita moschata] >XP_022959955.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita moschata]) HSP 1 Score: 515.4 bits (1326), Expect = 2.4e-142 Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0
BLAST of Carg04985 vs. NCBI nr
Match: XP_023514107.1 (pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 514.2 bits (1323), Expect = 5.3e-142 Identity = 318/319 (99.69%), Postives = 319/319 (100.00%), Query Frame = 0
BLAST of Carg04985 vs. NCBI nr
Match: XP_023004266.1 (pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004267.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004268.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004269.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima] >XP_023004270.1 pentatricopeptide repeat-containing protein At1g05600 [Cucurbita maxima]) HSP 1 Score: 513.1 bits (1320), Expect = 1.2e-141 Identity = 317/319 (99.37%), Postives = 319/319 (100.00%), Query Frame = 0
BLAST of Carg04985 vs. NCBI nr
Match: XP_016902498.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucumis melo] >XP_016902499.1 PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucumis melo]) HSP 1 Score: 452.6 bits (1163), Expect = 1.9e-123 Identity = 279/317 (88.01%), Postives = 299/317 (94.32%), Query Frame = 0
BLAST of Carg04985 vs. NCBI nr
Match: XP_004140638.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g05600 isoform X1 [Cucumis sativus] >KGN46470.1 hypothetical protein Csa_6G095860 [Cucumis sativus]) HSP 1 Score: 439.5 bits (1129), Expect = 1.7e-119 Identity = 271/318 (85.22%), Postives = 291/318 (91.51%), Query Frame = 0
BLAST of Carg04985 vs. TAIR10
Match: AT1G05600.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 218.4 bits (555), Expect = 1.1e-56 Identity = 121/317 (38.17%), Postives = 169/317 (53.31%), Query Frame = 0
BLAST of Carg04985 vs. TAIR10
Match: AT3G09060.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 74.7 bits (182), Expect = 2.0e-13 Identity = 33/129 (25.58%), Postives = 71/129 (55.04%), Query Frame = 0
BLAST of Carg04985 vs. TAIR10
Match: AT1G07740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 58.9 bits (141), Expect = 1.1e-08 Identity = 28/121 (23.14%), Postives = 66/121 (54.55%), Query Frame = 0
BLAST of Carg04985 vs. TAIR10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 54.7 bits (130), Expect = 2.1e-07 Identity = 34/123 (27.64%), Postives = 61/123 (49.59%), Query Frame = 0
BLAST of Carg04985 vs. TAIR10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 54.3 bits (129), Expect = 2.7e-07 Identity = 23/91 (25.27%), Postives = 45/91 (49.45%), Query Frame = 0
BLAST of Carg04985 vs. Swiss-Prot
Match: sp|Q9SYK1|PPR11_ARATH (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX=3702 GN=At1g05600 PE=2 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 2.0e-55 Identity = 121/317 (38.17%), Postives = 169/317 (53.31%), Query Frame = 0
BLAST of Carg04985 vs. Swiss-Prot
Match: sp|Q9SS81|PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 3.5e-12 Identity = 33/129 (25.58%), Postives = 71/129 (55.04%), Query Frame = 0
BLAST of Carg04985 vs. Swiss-Prot
Match: sp|Q9LQQ1|PPR20_ARATH (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g07740 PE=2 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 2.0e-07 Identity = 28/121 (23.14%), Postives = 66/121 (54.55%), Query Frame = 0
BLAST of Carg04985 vs. Swiss-Prot
Match: sp|Q9LFF1|PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 3.8e-06 Identity = 34/123 (27.64%), Postives = 61/123 (49.59%), Query Frame = 0
BLAST of Carg04985 vs. Swiss-Prot
Match: sp|Q9M302|PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 4.9e-06 Identity = 23/91 (25.27%), Postives = 45/91 (49.45%), Query Frame = 0
BLAST of Carg04985 vs. TrEMBL
Match: tr|A0A1S4E2N8|A0A1S4E2N8_CUCME (pentatricopeptide repeat-containing protein At1g05600 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498838 PE=4 SV=1) HSP 1 Score: 452.6 bits (1163), Expect = 1.3e-123 Identity = 279/317 (88.01%), Postives = 299/317 (94.32%), Query Frame = 0
BLAST of Carg04985 vs. TrEMBL
Match: tr|A0A0A0K9Q4|A0A0A0K9Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095860 PE=4 SV=1) HSP 1 Score: 439.5 bits (1129), Expect = 1.1e-119 Identity = 271/318 (85.22%), Postives = 291/318 (91.51%), Query Frame = 0
BLAST of Carg04985 vs. TrEMBL
Match: tr|A0A1S3CB38|A0A1S3CB38_CUCME (pentatricopeptide repeat-containing protein At1g05600 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498838 PE=4 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 1.2e-94 Identity = 235/267 (88.01%), Postives = 251/267 (94.01%), Query Frame = 0
BLAST of Carg04985 vs. TrEMBL
Match: tr|B9RNK1|B9RNK1_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1339630 PE=4 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 6.3e-83 Identity = 166/308 (53.90%), Postives = 203/308 (65.91%), Query Frame = 0
BLAST of Carg04985 vs. TrEMBL
Match: tr|G7JZ89|G7JZ89_MEDTR (PPR containing plant-like protein OS=Medicago truncatula OX=3880 GN=11432583 PE=4 SV=1) HSP 1 Score: 315.8 bits (808), Expect = 1.8e-82 Identity = 160/319 (50.16%), Postives = 206/319 (64.58%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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