Carg13518-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13518-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mast/stem cell growth factor receptor Kit like
Location	Cucurbita_argyrosperma_scaffold_053 : 33043 .. 35914 (-)
Sequence length	1147

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTTGAGTTTGATTTCCATTCCGCTTTTCCTTCTGTAATTCATCTTCTCCAACGAGCTCGTTTCCATTTTGCATTTCTCATTTCTGGACACACAGAGAAGTAGAGGAGATACAGAAAGGTCTAGGAATGGCAGTGAAGCCGGCGGGTTCGTGCCCTCCAGGACTGACGAAGGTGGGATTGGGTTTTATAGCTCTCTGTATAGCTGCTTACATTTTGGGTCCGCCTCTCTACTGGCACTTCATGGAGGGCTTGGCTGTTCTCTCTTCTTCCTCTTCCTCAACTTGTCCACCTTGCTCTTGTGACTGTTCTTCTCAGACTGACTTCGCCTTCACTGATGGTGAGTTTGTCCGGAAATGAAATACTCTAGATTTTAGGCATCATATTCTTGCAGATCTAGTTTCTTTCCGCTCTTTTGTGTCCTTTCTTTTTGTTTTCTGATTTCCTCTTTGATCTCATGTTCCATGTTGCCAAAAGTTTAGACGACTGCTACCTTTTTCTTGTTCTTTTTTGCTGAAAATTCTTCAGTTGCTTGATTCTGTTTCTCCTTGATCGAGGAGGATCATGTTAATTGTGAATTTGGTCTCAAATGCCAAAAACAAGTATTTTATGCTCCATTGTGCTGCCATGGAACAATAATACTTTAGCCAACTTGAACTGTAAATGCATTCTGCTTCGTTTAAAAGGCTTGTAGGTTCGAATTCCCACCCTTAATCTTCTTTTAGCCATTGATGGTTTCAGCTTTTCTATATTCAAATCTGCTATCGCTGGACTTCAATCTCATATTGTTTTTATTATTTGTGTTATCATTGCAAATTATGTTAAGGTTTGAGGATTAAATCTAGTTTGATTTAAAGTCTTTATCCAGAGTTTAAATTCTACAAGCTTCACTTATATCCTTACCAAAAACAAGAAATAGAACAAAATATTGCAAAGAATATTCTGTTATCTGTTGTACTGATATGGAGTAGAGACTTAATTTTGAATGTTTGAAGTTCTTGCTTGAGATTTTTTTTTTTTTTTTTTTTTTTTTTTGATAAGAGACAGTTTCATTCAACATGTTCATTAGTGCCGAAGCTATCTTGTTGCTCGGTGTCGATTGATGTTGAAACTAAAGGTAGAATAATGCTTGGAGTCATAAACTTGTAGTACTCAGAGTAGTATCTTGATTTGGTTTGAAACCCACATTCATTACATCTTTGTAATCAGTAAATGTTTACTTCATATGGTTTTCCTTTAGCTGTGTTCTGCTCTGCTATTTGTAAGTATTCAAGTATTCCCTTCTGTAGCTGTGAGATCTCACATTGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAATCGTGAAGCTGATAGCGATGTAGCGGGTCAAAGCGGACAACATCTATTAGCGGTAGGGTTTGGGCTGTTGTGACGTGATGCTTGTTGTTTTTCCATATTCATTATCCACAAGCTTGTGTGCCTTGTGTTGATACTGTGAGAGGATTCATTCTTTTAGTTTCCCTTGCAATGGGTTATCTTAAAACTGATTCTTAATTTGGTTTGCTTGCTTTGCATAGTTTGAAAACACGACTTTTAGAGGTTAGTCTTGTTTATGCTAATTTGGATAAATGATTATTCTTGTATATTATAGATTGTAGAAAATCTCATCCTCTTGCAAGAATTTTTTGCTCTGTTCTTGAATTTGTATTGATTCTCATACTCATGTCTAATCAAGGAAAATTCTTAGAATTTGCTCAATATTTTTACTAGAAAAGAGCAAACGAACTACAAGCTACTACTAGCATGATCGTCTTGCTCCAGTTGAATCGAGCTCAAAGTTTTACCCTCTTAGTTTTGTATTTCAAATTGCTACATCAAATGAAGTCTTATGGTCTCAAATTTGCATATCATATCAGCAACAAATGTAACTAATGAAGTGATATGATTGCCACTTGCTAAGTAGCATTATTGGTTTCTTGTTTTTTATGTAGATGTTCTATTTCTTTAGTAACATAGAATGAGTTCTCTCTTTGTTTCCATTCTTACAGATTGTGTGAAACATGACTCTGGCATGAATGAGGAAACAGAAGAGAGTTTTGCAGAGTTGTTGTCCGAGGAACTGAAGCTGAGGGAAGCCGAAGCCGTGGAACGTCATCGGCGCGCTGACATATCTCTTCTGGAAGCGAAGAAGATGACATCTCAATATCAGAAAGAAGCAGACAAGTGCAATTCAGGCATGGAAACATGTGAAGCAGCAAGGGAAAGAGCTGAAGCTACATTAGCTTCACAGAAGAAGCTAACAGCATTATGGGAGAATAGGGCTCGCCAAAGAGGATGGAGAGACGACATTGTCACGTCACATGCCGCTCGTGATATCGTTCAAACTTCATGAATGACCCGATGCTAAACAGGTGCTTTGACAGTAGCTTGGAATTTGATTAATCTATACTGGGAGCCCAGGTTTTTCTTTTTACATATCCCACTTAGGTTTCTTCTTCAAACTCCCACTTGTATGAACATGATAGATAGCGATATATTATGGAAAAGATACCAACCAGATGCCTCTCTCCTTTCCCTTCAAGAGATTATGACCTAAAACCTTTGGCAAGGCAATGTTATCTAGCAAATCTTCCTTTGATGCTTAATGGGCTGTTTCAATATTTGATAGAACAGTAGGTTAGACTACTCATCTAACTTCTTGTCCCTAGAACGGTTAAATATCATCTTCGTTCATAAAGAACGTAGAAGAGATCAAAGAGATTGCTCATCTAACTTTTTGTCCCTAGAACGATTAAATATCATCTTCGTTCATAAAGAACATACAAGAGATCAAAGAGATTGCTTGACATAAACTTT

mRNA sequence

CCACTTGAGTTTGATTTCCATTCCGCTTTTCCTTCTGTAATTCATCTTCTCCAACGAGCTCGTTTCCATTTTGCATTTCTCATTTCTGGACACACAGAGAAGTAGAGGAGATACAGAAAGGTCTAGGAATGGCAGTGAAGCCGGCGGGTTCGTGCCCTCCAGGACTGACGAAGGTGGGATTGGGTTTTATAGCTCTCTGTATAGCTGCTTACATTTTGGGTCCGCCTCTCTACTGGCACTTCATGGAGGGCTTGGCTGTTCTCTCTTCTTCCTCTTCCTCAACTTGTCCACCTTGCTCTTGTGACTGTTCTTCTCAGACTGACTTCGCCTTCACTGATGATTGTGTGAAACATGACTCTGGCATGAATGAGGAAACAGAAGAGAGTTTTGCAGAGTTGTTGTCCGAGGAACTGAAGCTGAGGGAAGCCGAAGCCGTGGAACGTCATCGGCGCGCTGACATATCTCTTCTGGAAGCGAAGAAGATGACATCTCAATATCAGAAAGAAGCAGACAAGTGCAATTCAGGCATGGAAACATGTGAAGCAGCAAGGGAAAGAGCTGAAGCTACATTAGCTTCACAGAAGAAGCTAACAGCATTATGGGAGAATAGGGCTCGCCAAAGAGGATGGAGAGACGACATTGTCACGTCACATGCCGCTCGTGATATCGTTCAAACTTCATGAATGACCCGATGCTAAACAGGTGCTTTGACAGTAGCTTGGAATTTGATTAATCTATACTGGGAGCCCAGGTTTTTCTTTTTACATATCCCACTTAGGTTTCTTCTTCAAACTCCCACTTGTATGAACATGATAGATAGCGATATATTATGGAAAAGATACCAACCAGATGCCTCTCTCCTTTCCCTTCAAGAGATTATGACCTAAAACCTTTGGCAAGGCAATGTTATCTAGCAAATCTTCCTTTGATGCTTAATGGGCTGTTTCAATATTTGATAGAACAGTAGGTTAGACTACTCATCTAACTTCTTGTCCCTAGAACGGTTAAATATCATCTTCGTTCATAAAGAACGTAGAAGAGATCAAAGAGATTGCTCATCTAACTTTTTGTCCCTAGAACGATTAAATATCATCTTCGTTCATAAAGAACATACAAGAGATCAAAGAGATTGCTTGACATAAACTTT

Coding sequence (CDS)

ATGGCAGTGAAGCCGGCGGGTTCGTGCCCTCCAGGACTGACGAAGGTGGGATTGGGTTTTATAGCTCTCTGTATAGCTGCTTACATTTTGGGTCCGCCTCTCTACTGGCACTTCATGGAGGGCTTGGCTGTTCTCTCTTCTTCCTCTTCCTCAACTTGTCCACCTTGCTCTTGTGACTGTTCTTCTCAGACTGACTTCGCCTTCACTGATGATTGTGTGAAACATGACTCTGGCATGAATGAGGAAACAGAAGAGAGTTTTGCAGAGTTGTTGTCCGAGGAACTGAAGCTGAGGGAAGCCGAAGCCGTGGAACGTCATCGGCGCGCTGACATATCTCTTCTGGAAGCGAAGAAGATGACATCTCAATATCAGAAAGAAGCAGACAAGTGCAATTCAGGCATGGAAACATGTGAAGCAGCAAGGGAAAGAGCTGAAGCTACATTAGCTTCACAGAAGAAGCTAACAGCATTATGGGAGAATAGGGCTCGCCAAAGAGGATGGAGAGACGACATTGTCACGTCACATGCCGCTCGTGATATCGTTCAAACTTCATGA

Protein sequence

MAVKPAGSCPPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDCSSQTDFAFTDDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVTSHAARDIVQTS

Homology

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BLAST of Carg13518-RA vs. NCBI nr
Match: XP_023534558.1 (uncharacterized protein LOC111796098 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.9 bits (912), Expect = 8.2e-95
Identity = 182/184 (98.91%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MAVKPAGSCPPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDC 60
           MAVKPAGSC PGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPC CDC
Sbjct: 1   MAVKPAGSCSPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCFCDC 60

Query: 61  SSQTDFAFTDDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMT 120
           SSQTDFAFTDDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMT
Sbjct: 61  SSQTDFAFTDDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMT 120

Query: 121 SQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVTSHAARDI 180
           SQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVTSHAARDI
Sbjct: 121 SQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVTSHAARDI 180

Query: 181 VQTS 185
           VQTS
Sbjct: 181 VQTS 184

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BLAST of Carg13518-RA vs. NCBI nr
Match: XP_022947174.1 (uncharacterized protein LOC111451120 isoform X2 [Cucurbita moschata])

HSP 1 Score: 349.7 bits (896), Expect = 5.9e-93
Identity = 178/184 (96.74%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MAVKPAGSCPPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDC 60
           MAVKPAGSC PGLTKVGLGFIALCIAAYILGPPLYWHF+EGLAVLSSSSSSTCPPC CDC
Sbjct: 1   MAVKPAGSCSPGLTKVGLGFIALCIAAYILGPPLYWHFVEGLAVLSSSSSSTCPPCFCDC 60

Query: 61  SSQTDFAFTDDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMT 120
           SSQTDFAFTDDCVKHDSGMNEETEE+FAELLSEELKLREAEA+ERHRRADISLLEAKKMT
Sbjct: 61  SSQTDFAFTDDCVKHDSGMNEETEETFAELLSEELKLREAEAMERHRRADISLLEAKKMT 120

Query: 121 SQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVTSHAARDI 180
           SQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIV SHAARDI
Sbjct: 121 SQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVMSHAARDI 180

Query: 181 VQTS 185
           VQTS
Sbjct: 181 VQTS 184

[Close]

BLAST of Carg13518-RA vs. NCBI nr
Match: XP_023534557.1 (uncharacterized protein LOC111796098 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348.6 bits (893), Expect = 1.3e-92
Identity = 182/192 (94.79%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 1   MAVKPAGSCPPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDC 60
           MAVKPAGSC PGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPC CDC
Sbjct: 1   MAVKPAGSCSPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCFCDC 60

Query: 61  SSQTDFAFTD--------DCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADIS 120
           SSQTDFAFTD        DCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADIS
Sbjct: 61  SSQTDFAFTDEFENTTFRDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADIS 120

Query: 121 LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIV 180
           LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIV
Sbjct: 121 LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIV 180

Query: 181 TSHAARDIVQTS 185
           TSHAARDIVQTS
Sbjct: 181 TSHAARDIVQTS 192

[Close]

BLAST of Carg13518-RA vs. NCBI nr
Match: XP_022971113.1 (uncharacterized protein LOC111469880 isoform X2 [Cucurbita maxima])

HSP 1 Score: 347.4 bits (890), Expect = 2.9e-92
Identity = 177/184 (96.20%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MAVKPAGSCPPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDC 60
           MAVKPAGSC PGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSS SSTCPPC CDC
Sbjct: 1   MAVKPAGSCSPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSYSSTCPPCFCDC 60

Query: 61  SSQTDFAFTDDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMT 120
           SSQTDFAFTDDCVKHDSGMNEETEESFAELLSE+LKLREA+A+ERHRRADISLLEAKKMT
Sbjct: 61  SSQTDFAFTDDCVKHDSGMNEETEESFAELLSEQLKLREAKAMERHRRADISLLEAKKMT 120

Query: 121 SQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVTSHAARDI 180
           SQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIV SHAARDI
Sbjct: 121 SQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVMSHAARDI 180

Query: 181 VQTS 185
           VQTS
Sbjct: 181 VQTS 184

[Close]

BLAST of Carg13518-RA vs. NCBI nr
Match: XP_022947173.1 (uncharacterized protein LOC111451120 isoform X1 [Cucurbita moschata])

HSP 1 Score: 342.4 bits (877), Expect = 9.3e-91
Identity = 178/192 (92.71%), Postives = 181/192 (94.27%), Query Frame = 0


Query: 1   MAVKPAGSCPPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDC 60
           MAVKPAGSC PGLTKVGLGFIALCIAAYILGPPLYWHF+EGLAVLSSSSSSTCPPC CDC
Sbjct: 1   MAVKPAGSCSPGLTKVGLGFIALCIAAYILGPPLYWHFVEGLAVLSSSSSSTCPPCFCDC 60

Query: 61  SSQTDFAFTD--------DCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADIS 120
           SSQTDFAFTD        DCVKHDSGMNEETEE+FAELLSEELKLREAEA+ERHRRADIS
Sbjct: 61  SSQTDFAFTDEFENTTFRDCVKHDSGMNEETEETFAELLSEELKLREAEAMERHRRADIS 120

Query: 121 LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIV 180
           LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIV
Sbjct: 121 LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIV 180

Query: 181 TSHAARDIVQTS 185
            SHAARDIVQTS
Sbjct: 181 MSHAARDIVQTS 192

[Close]

BLAST of Carg13518-RA vs. TAIR10
Match: AT4G04360.1 (Protein of unknown function (DUF1068))

HSP 1 Score: 162.2 bits (409), Expect = 3.1e-40
Identity = 92/168 (54.76%), Postives = 114/168 (67.86%), Query Frame = 0


Query: 15  KVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDCSSQTDFAFTD---- 74
           KV    + LCI AYI GP LYWH  E +A    S  S+CPPC CDCSSQ   +  D    
Sbjct: 10  KVVTVVMGLCIVAYIAGPSLYWHLNETIA---DSLHSSCPPCVCDCSSQPLLSIPDGLSN 69

Query: 75  ----DCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMTSQYQKE 134
               DC++H+ G +EE+E SF E+++EELKLREA+A E   RAD  LL+AKK  SQYQKE
Sbjct: 70  HSFLDCMRHEEG-SEESESSFTEMVAEELKLREAQAQEDEWRADRLLLDAKKAASQYQKE 129

Query: 135 ADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVTS 175
           ADKC+ GMETCE ARE+AEA L  Q++L+ +WE RARQ GW++  V S
Sbjct: 130 ADKCSMGMETCELAREKAEAALDEQRRLSYMWELRARQGGWKEGTVAS 173

[Close]

BLAST of Carg13518-RA vs. TAIR10
Match: AT1G05070.1 (Protein of unknown function (DUF1068))

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-38
Identity = 85/163 (52.15%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 15  KVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDCSS--------QTDF 74
           K+GL  + L +A YILGPPLYWH  E LA +S+SS   CP C C+CS+        +   
Sbjct: 9   KIGLALLGLSMAGYILGPPLYWHLTEALAAVSASS---CPSCPCECSTYSAVTIPKELSN 68

Query: 75  AFTDDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMTSQYQKE 134
           A   DC KHD  +NE+TE+++AELL+EELKLREAE++E+H+RAD+ LLEAKK+TS YQKE
Sbjct: 69  ASFADCAKHDPEVNEDTEKNYAELLTEELKLREAESLEKHKRADMGLLEAKKVTSSYQKE 128

Query: 135 ADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRD 170
           ADKCNSGMETCE A                      RQ+GWR+
Sbjct: 129 ADKCNSGMETCEEAXXXXXXXXXXXXXXXXXXXXXXRQKGWRE 168

[Close]

BLAST of Carg13518-RA vs. TAIR10
Match: AT2G32580.1 (Protein of unknown function (DUF1068))

HSP 1 Score: 151.0 bits (380), Expect = 7.2e-37
Identity = 87/169 (51.48%), Postives = 109/169 (64.50%), Query Frame = 0


Query: 15  KVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDCSS---------QTD 74
           KVGL  +AL +  YILGPPLYWH  E LAV    S+++C  C CDCSS          ++
Sbjct: 9   KVGLALLALSMIGYILGPPLYWHLTEALAV----SATSCSACVCDCSSLPLLTIPTGLSN 68

Query: 75  FAFTDDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMTSQYQK 134
            +FT DC K D  +NE+TE+++AELL+EELK REA ++E+H+R D  LLEAKK+TS YQK
Sbjct: 69  GSFT-DCAKRDPEVNEDTEKNYAELLTEELKQREAASMEKHKRVDTGLLEAKKITSSYQK 128

Query: 135 EADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVTS 175
           EADKCNSGMETCE AR                 E RARQ+G++D    S
Sbjct: 129 EADKCNSGMETCEEARXXXXXXXXXXXXXXXXXEQRARQKGYKDGATKS 172

[Close]

BLAST of Carg13518-RA vs. TAIR10
Match: AT4G30996.1 (Protein of unknown function (DUF1068))

HSP 1 Score: 131.0 bits (328), Expect = 7.8e-31
Identity = 74/162 (45.68%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 18  LGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDCSSQTDF---------AF 77
           L   A+  A  + GP LYW F +G  V S+ ++S CPPC CDC                 
Sbjct: 12  LVIFAVVSALVVCGPALYWKFNKGF-VGSTRANSLCPPCVCDCPPPLSLLQIAPGLANLS 71

Query: 78  TDDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMTSQYQKEAD 137
             DC   D  + +E E+ F +LL+EELKL+EA A E  R  +++L EAK++ SQYQKEA+
Sbjct: 72  ITDCGSDDPELKQEMEKQFVDLLTEELKLQEAVADEHSRHMNVTLAEAKRVASQYQKEAE 131

Query: 138 KCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDD 171
           KCN+  E CE+ARERAEA L  ++K+T+LWE RARQ GW  +
Sbjct: 132 KCNAATEICESARERAEALLIKERKITSLWEKRARQSGWEGE 172

[Close]

BLAST of Carg13518-RA vs. TAIR10
Match: AT2G24290.1 (Protein of unknown function (DUF1068))

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-28
Identity = 69/155 (44.52%), Postives = 94/155 (60.65%), Query Frame = 0


Query: 26  AAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCD----------CSSQTDFAFTDDCVKH 85
           A  + GP LYW   +G    + S++S CPPC CD               + + T  C   
Sbjct: 20  ALLVCGPALYWKLNKGFVGSARSTNSICPPCVCDFPPPLSLLQIAPGLANLSIT-GCGSD 79

Query: 86  DSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMTSQYQKEADKCNSGME 145
           D  + EE E+ F +LL+EELKL+EA A E  R  +++L EAK++ SQYQKEA+KCN+  E
Sbjct: 80  DPELKEEMEKPFVDLLTEELKLQEAVADEHSRHMNVTLAEAKRVASQYQKEAEKCNAATE 139

Query: 146 TCEAARERAEATLASQKKLTALWENRARQRGWRDD 171
            CE+ARERA+A L  ++K+T LWE RARQ GW  +
Sbjct: 140 ICESARERAQALLLKERKITFLWERRARQLGWEGE 173

[Close]

BLAST of Carg13518-RA vs. TrEMBL
Match: tr|A0A1S3C2Q4|A0A1S3C2Q4_CUCME (uncharacterized protein LOC103495987 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495987 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.4e-79
Identity = 158/184 (85.87%), Postives = 165/184 (89.67%), Query Frame = 0


Query: 1   MAVKPAGSCPPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDC 60
           MA KP GS  PGLTKVGL F+A+CIAAYILGPPLYWHF EGLA  SSSS STCPPC CDC
Sbjct: 1   MAAKPVGSFSPGLTKVGLCFMAVCIAAYILGPPLYWHFTEGLAAFSSSSLSTCPPCFCDC 60

Query: 61  SSQTDFAFTDDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMT 120
           SS TDFAFT+DCVKHDSGMNEETE++FAELLSEELKLREAEA+E HRRADISLLEAKKMT
Sbjct: 61  SSLTDFAFTEDCVKHDSGMNEETEKNFAELLSEELKLREAEALENHRRADISLLEAKKMT 120

Query: 121 SQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVTSHAARDI 180
           SQYQKEADKCNSGMETCEAARERAEATLASQK+LT LWE RARQRGWRDDIVTS   R  
Sbjct: 121 SQYQKEADKCNSGMETCEAARERAEATLASQKRLTTLWETRARQRGWRDDIVTS---RGT 180

Query: 181 VQTS 185
           VQTS
Sbjct: 181 VQTS 181

[Close]

BLAST of Carg13518-RA vs. TrEMBL
Match: tr|A0A0A0LQC2|A0A0A0LQC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G416150 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.0e-77
Identity = 155/182 (85.16%), Postives = 162/182 (89.01%), Query Frame = 0


Query: 1   MAVKPAGSCPPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDC 60
           MAVKP GSC PGLTKVGL  +ALCIAAYILGPPLYWHFMEGL   SSSS STCPPC CDC
Sbjct: 1   MAVKPVGSCSPGLTKVGLFLMALCIAAYILGPPLYWHFMEGLPAFSSSSLSTCPPCFCDC 60

Query: 61  SSQTDFAFTD--------DCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADIS 120
           SS TDFAFT+        DCVKHDSGMNEETE++FAELLSEELKLREAEA+E HRRADIS
Sbjct: 61  SSLTDFAFTEELENTTFRDCVKHDSGMNEETEKNFAELLSEELKLREAEALENHRRADIS 120

Query: 121 LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIV 175
           LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQK+LTALWE RARQRGWRD+IV
Sbjct: 121 LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKRLTALWETRARQRGWRDNIV 180

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BLAST of Carg13518-RA vs. TrEMBL
Match: tr|A0A1S3C1Z9|A0A1S3C1Z9_CUCME (uncharacterized protein LOC103495987 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495987 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.9e-77
Identity = 158/192 (82.29%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 1   MAVKPAGSCPPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDC 60
           MA KP GS  PGLTKVGL F+A+CIAAYILGPPLYWHF EGLA  SSSS STCPPC CDC
Sbjct: 1   MAAKPVGSFSPGLTKVGLCFMAVCIAAYILGPPLYWHFTEGLAAFSSSSLSTCPPCFCDC 60

Query: 61  SSQTDFAFTD--------DCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADIS 120
           SS TDFAFT+        DCVKHDSGMNEETE++FAELLSEELKLREAEA+E HRRADIS
Sbjct: 61  SSLTDFAFTEELKNTTFRDCVKHDSGMNEETEKNFAELLSEELKLREAEALENHRRADIS 120

Query: 121 LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIV 180
           LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQK+LT LWE RARQRGWRDDIV
Sbjct: 121 LLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKRLTTLWETRARQRGWRDDIV 180

Query: 181 TSHAARDIVQTS 185
           TS   R  VQTS
Sbjct: 181 TS---RGTVQTS 189

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BLAST of Carg13518-RA vs. TrEMBL
Match: tr|A0A2P5B190|A0A2P5B190_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_280910 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.5e-57
Identity = 123/185 (66.49%), Postives = 146/185 (78.92%), Query Frame = 0


Query: 1   MAVKPAGSCPPGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDC 60
           M   PAG+C P + K GL  IALCIA YILGPPLYWHFMEGLA +S SSSS CPPC CDC
Sbjct: 3   MTQNPAGACSPVVLKTGLTVIALCIAGYILGPPLYWHFMEGLAAVSHSSSS-CPPCVCDC 62

Query: 61  SSQ---------TDFAFTDDCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADI 120
           SSQ         ++ +FT DC K D  ++E+TE++FA+LL+EELKLREAEA+E  RRAD+
Sbjct: 63  SSQPLLSIPIGLSNTSFT-DCAKRDPEVSEDTEKNFADLLAEELKLREAEALEHQRRADM 122

Query: 121 SLLEAKKMTSQYQKEADKCNSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDI 177
           +LLEAKK+TSQYQKEADKC SGMETCE ARE+AEA LA+QKKLTA+WE RARQRGW++ +
Sbjct: 123 ALLEAKKVTSQYQKEADKCTSGMETCEEAREKAEAALAAQKKLTAMWEQRARQRGWKEGM 182

[Close]

BLAST of Carg13518-RA vs. TrEMBL
Match: tr|A0A2I4GX55|A0A2I4GX55_9ROSI (uncharacterized protein LOC109011638 OS=Juglans regia OX=51240 GN=LOC109011638 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.6e-57
Identity = 118/175 (67.43%), Postives = 143/175 (81.71%), Query Frame = 0


Query: 11  PGLTKVGLGFIALCIAAYILGPPLYWHFMEGLAVLSSSSSSTCPPCSCDCSSQTDFAFTD 70
           P + KVGL  + LCIA YILGPPLYWHFMEGLA +S SS+S CPPC CDCSSQ   +  +
Sbjct: 6   PTVLKVGLAVVGLCIAGYILGPPLYWHFMEGLAAVSHSSNS-CPPCQCDCSSQPLLSIPE 65

Query: 71  DCVKHDSGMNEETEESFAELLSEELKLREAEAVERHRRADISLLEAKKMTSQYQKEADKC 130
           DC KHD  ++E+TE++FAELL+EELKLREAEA+E  +RAD++LLEAKK+TSQYQKEADKC
Sbjct: 66  DCAKHDPEVSEDTEKNFAELLTEELKLREAEALENQQRADMALLEAKKITSQYQKEADKC 125

Query: 131 NSGMETCEAARERAEATLASQKKLTALWENRARQRGWRDDIVTSHAA-RDIVQTS 185
           +SGMETCE ARE+AEATL +QKKLT +WE RARQRGW++ +  SH   +  VQTS
Sbjct: 126 SSGMETCEEAREKAEATLVAQKKLTVMWELRARQRGWKEGMANSHTQNQGNVQTS 179

The following BLAST results are available for this feature:

BLAST of Carg13518-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534558.1	8.2e-95	98.91	uncharacterized protein LOC111796098 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022947174.1	5.9e-93	96.74	uncharacterized protein LOC111451120 isoform X2 [Cucurbita moschata]	[more]
XP_023534557.1	1.3e-92	94.79	uncharacterized protein LOC111796098 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022971113.1	2.9e-92	96.20	uncharacterized protein LOC111469880 isoform X2 [Cucurbita maxima]	[more]
XP_022947173.1	9.3e-91	92.71	uncharacterized protein LOC111451120 isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg13518-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G04360.1	3.1e-40	54.76	Protein of unknown function (DUF1068)	[more]
AT1G05070.1	2.3e-38	52.15	Protein of unknown function (DUF1068)	[more]
AT2G32580.1	7.2e-37	51.48	Protein of unknown function (DUF1068)	[more]
AT4G30996.1	7.8e-31	45.68	Protein of unknown function (DUF1068)	[more]
AT2G24290.1	2.1e-28	44.52	Protein of unknown function (DUF1068)	[more]

BLAST of Carg13518-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13518-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2Q4\|A0A1S3C2Q4_CUCME	2.4e-79	85.87	uncharacterized protein LOC103495987 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LQC2\|A0A0A0LQC2_CUCSA	1.0e-77	85.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G416150 PE=4 SV=1	[more]
tr\|A0A1S3C1Z9\|A0A1S3C1Z9_CUCME	3.9e-77	82.29	uncharacterized protein LOC103495987 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P5B190\|A0A2P5B190_PARAD	1.5e-57	66.49	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_280910 PE...	[more]
tr\|A0A2I4GX55\|A0A2I4GX55_9ROSI	2.6e-57	67.43	uncharacterized protein LOC109011638 OS=Juglans regia OX=51240 GN=LOC109011638 P...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010471	DUF1068

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13518	Carg13518	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13518-RA	Carg13518-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13518-RA.three_prime_UTR.1	Carg13518-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13518-RA.CDS.2	Carg13518-RA.CDS.2	CDS
Carg13518-RA.CDS.1	Carg13518-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13518-RA.five_prime_UTR.1	Carg13518-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13518-RA.exon.2	Carg13518-RA.exon.2	exon
Carg13518-RA.exon.1	Carg13518-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 134..154
None	No IPR available	PANTHER	PTHR32254	FAMILY NOT NAMED	coord: 14..177
None	No IPR available	PANTHER	PTHR32254:SF11	EXPRESSED PROTEIN	coord: 14..177
IPR010471	Protein of unknown function DUF1068	PFAM	PF06364	DUF1068	coord: 13..169 e-value: 1.7E-70 score: 236.2