Carg06139-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATTCCCTTCATCGCATTGGAAAATTCTATTTAACGAATAAGAATCGAGTTCTTGATCTGCCTCTGCAAATCAAACAATCCCATTTCGGTTCATCCTTCCACGGTAGAGCCTTGTCAAGCAGATCTTCTTCCCCTACCTCCGGTTTCGGGAAGTTTGGCAATGGCGACGATGAGTGGAATGATACTTGGGAATCTGCTTGGCTTCCGCAAGACCTTTCGCCGAAGAATAAAGCGCCATGGGAGAGCGATGTGAACTTCCCGTCTGGAAACCCTACGATTGTGTTGCCGTCGGATGTGGATGCAGAGACGAAAGCGTTTGTTGAGGATATGAATGAGAATTGGAACGAGAGGCGAAAGGCATCTCAAACGCAGAAACAAGGAGTGGATCAGCAAGAGATGGAAGGTGATGGTGATGGTGATGGTGGCGGCGGGTCGCTTTATAGCTTGGAAAACATAAAGAAGGATTATAGATTGAAGAAACAGAGGATTCATGCTAATTTGTGGATGAAGGAGATTGAGAAGCAAGAGGAGGCTAGGTTGGGGGATTCCATTACAGGCAGTGGAGATGACATTGAAAGATTGATGGATAGCTGCTCTGAGTGAGTTCTTCTTTCTCTTTTGTTAATGCAAATGGTTAAATCCTCATGTTTGTGGTGTTTATCTGCTGATCATTAGTAAAGGTGTTTGTTAATTGGATTCGACCCCAAATTTTTTAGATATATGAAAGAACACAGAAAAATCATCTCTATGGAAAGGATTTCCAACACTAACTTAGAAAATAAAGGTTCCAATCCAAAAGAATTAGACCAAATAGACAATTACAAAAAGTTAGAGAGACCAATGCCCACTACGAGGGATTGAATTTAACAATACCTTAAGCCCAAATGATAATAACTTAGAACCATTGTCTTTAAGAGCTGGCTTGGTGGACCCCGAGCGAGCTAGAGATTAATGGTATGGTCGTGAGCATAATCTAAGGAGGGGTAGCTCAAAACCTGATCATGAATGCATTAGATATTTACCTAGACTAGTAGGTTCTTGAGTGGATCCAATGTTAGCTCCAAGACATTGGTCTCTAACTAGAAATGTAAATGCTTGAGCTTGAGAAGCTTCGTGTCCGGTCGGCGTAAAACTCACTCGTACAAAAGAACACAATAAGGAAAATATGTCTGCAAGTTACTGCCTTGCTATTTTTTTTTATTTCCATTTTTTTCTTGAGCTAGCACAACAAGTCTAAACTGCTATGATTGCAGGATTTTTGAGTCTGTCAATGATGATTTAAACCATTCAAAAGTTCCAAGTTCCTCAGAGTTCAGAAACAAACCAGATGGATGGGAAACGACATCCAAAGGCCACGAGGGAAATGTATGGGAGATGACACAAAGGGAAGAAGACATTCTTCTTCAGGAGTTCGATCGTCGTATTGCATACAACAAATTTCAGGTGTGTTAATATTTCCTCGTTTTGCTATTGTTGTTACCACGCTTTATTTAAAGAAAAAAAGGCTTCTTCTGATAAGTGACAGAACTTGTCATTAGAAAGATGAAATATACAAGGGAAAAGAAAATTTGTGTAATCATGCAACACAAAGGAAACAAAGAGCACTTAGATAAACGATATAATATTTTTGTCAACTTGAGCATAGTTTAATTGGTTTTAGCATGTACCGTTCACCAAGAGGTCAAATGTTAGATTACCCACCCCCATTGAACTAAAAAAATAAGCAATAAACATCCCACAACTCTGTTGAAAACCATTCTTGTAAGCTAAATTACCAAGCTTGAAATGTACATAATCTTAAGACTTTATGGCTTCTCGTATAATTACTATAATAGCTCATTTATTGAATGAAACAATAAATAATTGCTCGTGGTATCATTTCAACTAAATCCAGAGGTAGTATGCATATAACATGGATTAAGAACTAAGAATTTTCTGATCTTTCTGGTTGTAGCTGTCAAATTCTGGCTCGGTTCACTGAGACCGGGTTGGAAAACTCTAGTCGAGAAAAAATCACAGAAGAAAACTATAACCGACTCGTCTATGACAGGACTAGTGTTATTGCATTGTTTACAATTGAAATGGTTAATGAATTACCGATAGTGTGATGTTACAATCTTAACTTTCTTTAATCAAGGATATCATTTCGTTCATTCGGAGTTCACCACGCCCCTCTATGTTATCCCTATACACTGTTGTTGCTCTGGATTTTCTTTCATTTCAGAAACTCTCTCTTTAGCGTACTCGTTACCAAGTTGCTCGTTTTCATGTGCAGATTGCTAGTTTCATCAAGACCCATATATTTAGTCGTCGGAGACCGATAGATGGGTGGAAATACATGATAGAGGAATTTGGGCCAAATGCCAAGAAAGGAAAAGGTAGTGTTTCAAGGATGCCTAATCTTTCTGATTCTTCAACTCAACCCTTCAAGGAGGAAAGAGTTGCAGCTTCCCCATCTCTCACACGCTTGAAGAGGATTTAA ATGAATTCCCTTCATCGCATTGGAAAATTCTATTTAACGAATAAGAATCGAGTTCTTGATCTGCCTCTGCAAATCAAACAATCCCATTTCGGTTCATCCTTCCACGGTAGAGCCTTGTCAAGCAGATCTTCTTCCCCTACCTCCGGTTTCGGGAAGTTTGGCAATGGCGACGATGAGTGGAATGATACTTGGGAATCTGCTTGGCTTCCGCAAGACCTTTCGCCGAAGAATAAAGCGCCATGGGAGAGCGATGTGAACTTCCCGTCTGGAAACCCTACGATTGTGTTGCCGTCGGATGTGGATGCAGAGACGAAAGCGTTTGTTGAGGATATGAATGAGAATTGGAACGAGAGGCGAAAGGCATCTCAAACGCAGAAACAAGGAGTGGATCAGCAAGAGATGGAAGGTGATGGTGATGGTGATGGTGGCGGCGGGTCGCTTTATAGCTTGGAAAACATAAAGAAGGATTATAGATTGAAGAAACAGAGGATTCATGCTAATTTGTGGATGAAGGAGATTGAGAAGCAAGAGGAGGCTAGGTTGGGGGATTCCATTACAGGCAGTGGAGATGACATTGAAAGATTGATGGATAGCTGCTCTGACACAACAAGTCTAAACTGCTATGATTGCAGGATTTTTGAGTCTGTCAATGATGATTTAAACCATTCAAAAGTTCCAAGTTCCTCAGAGTTCAGAAACAAACCAGATGGATGGGAAACGACATCCAAAGGCCACGAGGGAAATGTATGGGAGATGACACAAAGGGAAGAAGACATTCTTCTTCAGGAGTTCGATCGTCGTATTGCATACAACAAATTTCAGATTGCTAGTTTCATCAAGACCCATATATTTAGTCGTCGGAGACCGATAGATGGGTGGAAATACATGATAGAGGAATTTGGGCCAAATGCCAAGAAAGGAAAAGGTAGTGTTTCAAGGATGCCTAATCTTTCTGATTCTTCAACTCAACCCTTCAAGGAGGAAAGAGTTGCAGCTTCCCCATCTCTCACACGCTTGAAGAGGATTTAA ATGAATTCCCTTCATCGCATTGGAAAATTCTATTTAACGAATAAGAATCGAGTTCTTGATCTGCCTCTGCAAATCAAACAATCCCATTTCGGTTCATCCTTCCACGGTAGAGCCTTGTCAAGCAGATCTTCTTCCCCTACCTCCGGTTTCGGGAAGTTTGGCAATGGCGACGATGAGTGGAATGATACTTGGGAATCTGCTTGGCTTCCGCAAGACCTTTCGCCGAAGAATAAAGCGCCATGGGAGAGCGATGTGAACTTCCCGTCTGGAAACCCTACGATTGTGTTGCCGTCGGATGTGGATGCAGAGACGAAAGCGTTTGTTGAGGATATGAATGAGAATTGGAACGAGAGGCGAAAGGCATCTCAAACGCAGAAACAAGGAGTGGATCAGCAAGAGATGGAAGGTGATGGTGATGGTGATGGTGGCGGCGGGTCGCTTTATAGCTTGGAAAACATAAAGAAGGATTATAGATTGAAGAAACAGAGGATTCATGCTAATTTGTGGATGAAGGAGATTGAGAAGCAAGAGGAGGCTAGGTTGGGGGATTCCATTACAGGCAGTGGAGATGACATTGAAAGATTGATGGATAGCTGCTCTGACACAACAAGTCTAAACTGCTATGATTGCAGGATTTTTGAGTCTGTCAATGATGATTTAAACCATTCAAAAGTTCCAAGTTCCTCAGAGTTCAGAAACAAACCAGATGGATGGGAAACGACATCCAAAGGCCACGAGGGAAATGTATGGGAGATGACACAAAGGGAAGAAGACATTCTTCTTCAGGAGTTCGATCGTCGTATTGCATACAACAAATTTCAGATTGCTAGTTTCATCAAGACCCATATATTTAGTCGTCGGAGACCGATAGATGGGTGGAAATACATGATAGAGGAATTTGGGCCAAATGCCAAGAAAGGAAAAGGTAGTGTTTCAAGGATGCCTAATCTTTCTGATTCTTCAACTCAACCCTTCAAGGAGGAAAGAGTTGCAGCTTCCCCATCTCTCACACGCTTGAAGAGGATTTAA MNSLHRIGKFYLTNKNRVLDLPLQIKQSHFGSSFHGRALSSRSSSPTSGFGKFGNGDDEWNDTWESAWLPQDLSPKNKAPWESDVNFPSGNPTIVLPSDVDAETKAFVEDMNENWNERRKASQTQKQGVDQQEMEGDGDGDGGGGSLYSLENIKKDYRLKKQRIHANLWMKEIEKQEEARLGDSITGSGDDIERLMDSCSDTTSLNCYDCRIFESVNDDLNHSKVPSSSEFRNKPDGWETTSKGHEGNVWEMTQREEDILLQEFDRRIAYNKFQIASFIKTHIFSRRRPIDGWKYMIEEFGPNAKKGKGSVSRMPNLSDSSTQPFKEERVAASPSLTRLKRI
BLAST of Carg06139-RA vs. NCBI nr
Match: XP_022961285.1 (uncharacterized protein LOC111461829 [Cucurbita moschata]) HSP 1 Score: 579.3 bits (1492), Expect = 8.4e-162 Identity = 298/342 (87.13%), Postives = 299/342 (87.43%), Query Frame = 0
BLAST of Carg06139-RA vs. NCBI nr
Match: XP_022988172.1 (uncharacterized protein LOC111485489 [Cucurbita maxima]) HSP 1 Score: 576.6 bits (1485), Expect = 5.5e-161 Identity = 326/342 (95.32%), Postives = 329/342 (96.20%), Query Frame = 0
BLAST of Carg06139-RA vs. NCBI nr
Match: XP_023515378.1 (uncharacterized protein LOC111779550 [Cucurbita pepo subsp. pepo] >XP_023515379.1 uncharacterized protein LOC111779550 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 570.1 bits (1468), Expect = 5.1e-159 Identity = 323/342 (94.44%), Postives = 329/342 (96.20%), Query Frame = 0
BLAST of Carg06139-RA vs. NCBI nr
Match: XP_022147746.1 (uncharacterized protein LOC111016606 [Momordica charantia]) HSP 1 Score: 505.8 bits (1301), Expect = 1.2e-139 Identity = 298/343 (86.88%), Postives = 314/343 (91.55%), Query Frame = 0
BLAST of Carg06139-RA vs. NCBI nr
Match: XP_004144093.1 (PREDICTED: uncharacterized protein LOC101222958 [Cucumis sativus] >KGN66392.1 hypothetical protein Csa_1G600820 [Cucumis sativus]) HSP 1 Score: 477.2 bits (1227), Expect = 4.5e-131 Identity = 267/344 (77.62%), Postives = 282/344 (81.98%), Query Frame = 0
BLAST of Carg06139-RA vs. TAIR10
Match: AT2G02880.1 (mucin-related) HSP 1 Score: 304.7 bits (779), Expect = 7.3e-83 Identity = 167/291 (57.39%), Postives = 197/291 (67.70%), Query Frame = 0
BLAST of Carg06139-RA vs. TAIR10
Match: AT5G62270.2 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 108.6 bits (270), Expect = 7.7e-24 Identity = 61/195 (31.28%), Postives = 109/195 (55.90%), Query Frame = 0
BLAST of Carg06139-RA vs. TrEMBL
Match: tr|A0A0A0LZT4|A0A0A0LZT4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600820 PE=4 SV=1) HSP 1 Score: 477.2 bits (1227), Expect = 3.0e-131 Identity = 267/344 (77.62%), Postives = 282/344 (81.98%), Query Frame = 0
BLAST of Carg06139-RA vs. TrEMBL
Match: tr|A0A1S3BQ21|A0A1S3BQ21_CUCME (uncharacterized protein LOC103492453 OS=Cucumis melo OX=3656 GN=LOC103492453 PE=4 SV=1) HSP 1 Score: 448.0 bits (1151), Expect = 1.9e-122 Identity = 264/345 (76.52%), Postives = 286/345 (82.90%), Query Frame = 0
BLAST of Carg06139-RA vs. TrEMBL
Match: tr|F6H939|F6H939_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0034g01100 PE=4 SV=1) HSP 1 Score: 371.7 bits (953), Expect = 1.8e-99 Identity = 190/285 (66.67%), Postives = 216/285 (75.79%), Query Frame = 0
BLAST of Carg06139-RA vs. TrEMBL
Match: tr|A0A067KYD9|A0A067KYD9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15584 PE=4 SV=1) HSP 1 Score: 370.9 bits (951), Expect = 3.0e-99 Identity = 199/340 (58.53%), Postives = 235/340 (69.12%), Query Frame = 0
BLAST of Carg06139-RA vs. TrEMBL
Match: tr|A0A251PYB5|A0A251PYB5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G107100 PE=4 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 1.1e-98 Identity = 199/326 (61.04%), Postives = 229/326 (70.25%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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