Carg06130-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAATCAAACGCAATGCCGATGGATTCTTCGTTCAAAAGCTATCGGGATTTTGAGCCTCTACTCGATTGCCTTCATCATCCCGAGTCTCATCTTCTTCTCGTCCACCTCTTAGGTTTGACATTTTCCACTTTTGAGTTTTGCCAGTTTCAAAATGTATTTTCAAAATAAAATCATTAATTATCTGTTATTATTATTATTAACCACAACCATAAATTTTTTAAATTGAGTTTGTAATTTATTTAATTTTTTTAATAAAATTAAAATATTAATTCATAATATATATATATATATATATAATAAAAATTCACTAATTTAATTTTAATATATTTTTAAAAATAACCTTCCAAATTACTATATATTATTTTTAAGCGTTATTAAAAATAAATTAATATTAAATATATATAATTATATTGTAAACAAATATATATATATATATATATATATATATATATATATATATATATATATATTTTAAAATTAATAATAAATTTGAATTGGTTGAATTTAACAAATTTTTGGATGTATCAGATTTTCAGAATACCGTTAGATCAAATAGCTTAAAAATAAAATAGAAATTAAATTAAATTGTTGAAAACACAAACAATTTTTAATTTATGAAAATTTGAATTTACCATTGAATTTTCGATATTTTCTGCAGGTTTCACACGCAACAATCTGGAAGTTCGGGTGACATCCCCCGACAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCGATCAGGCGACATCCACCGGCAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCAACGGCAAGTGGCTCCGATTCCTCAAGGTAATCGATATCCCAGAAGATGCTGATACTAACAAGATCTCTGCCAAGTTGGAGAATGGCATCCTCTACGTGACGCAGCCCAGAAAAACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCCACGGAAGCTCAAGGCGGAATCCCAACCGCCGCCCGCCGCTGCACAAGGGAGTGGATGGGGGAGAAGAGGAGAATGGTTGAGGAGAAATATGGTGAATTTGGCTCTAGGGGCTGCTGCTGTTTTTGTGATTGTGTATCTCAATCTTACAAACAATGATCATATGGAGCAACAGTGGTGA AAAAATCAAACGCAATGCCGATGGATTCTTCGTTCAAAAGCTATCGGGATTTTGAGCCTCTACTCGATTGCCTTCATCATCCCGAGTCTCATCTTCTTCTCGTCCACCTCTTAGGTTTCACACGCAACAATCTGGAAGTTCGGGTGACATCCCCCGACAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCGATCAGGCGACATCCACCGGCAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCAACGGCAAGTGGCTCCGATTCCTCAAGGTAATCGATATCCCAGAAGATGCTGATACTAACAAGATCTCTGCCAAGTTGGAGAATGGCATCCTCTACGTGACGCAGCCCAGAAAAACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCCACGGAAGCTCAAGGCGGAATCCCAACCGCCGCCCGCCGCTGCACAAGGGAGTGGATGGGGGAGAAGAGGAGAATGGTTGAGGAGAAATATGGTGAATTTGGCTCTAGGGGCTGCTGCTGTTTTTGTGATTGTGTATCTCAATCTTACAAACAATGATCATATGGAGCAACAGTGGTGA ATGCCGATGGATTCTTCGTTCAAAAGCTATCGGGATTTTGAGCCTCTACTCGATTGCCTTCATCATCCCGAGTCTCATCTTCTTCTCGTCCACCTCTTAGGTTTCACACGCAACAATCTGGAAGTTCGGGTGACATCCCCCGACAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCGATCAGGCGACATCCACCGGCAAGTTGAGGATCTCCGGCGAACGGAGGCTCACCAACGGCAAGTGGCTCCGATTCCTCAAGGTAATCGATATCCCAGAAGATGCTGATACTAACAAGATCTCTGCCAAGTTGGAGAATGGCATCCTCTACGTGACGCAGCCCAGAAAAACCTCCGCCGTCTCTTCCAACAACCCACCGGCTCAGCCACGGAAGCTCAAGGCGGAATCCCAACCGCCGCCCGCCGCTGCACAAGGGAGTGGATGGGGGAGAAGAGGAGAATGGTTGAGGAGAAATATGGTGAATTTGGCTCTAGGGGCTGCTGCTGTTTTTGTGATTGTGTATCTCAATCTTACAAACAATGATCATATGGAGCAACAGTGGTGA MPMDSSFKSYRDFEPLLDCLHHPESHLLLVHLLGFTRNNLEVRVTSPDKLRISGERRLTDQATSTGKLRISGERRLTNGKWLRFLKVIDIPEDADTNKISAKLENGILYVTQPRKTSAVSSNNPPAQPRKLKAESQPPPAAAQGSGWGRRGEWLRRNMVNLALGAAAVFVIVYLNLTNNDHMEQQW
BLAST of Carg06130-RA vs. NCBI nr
Match: XP_022960896.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita moschata]) HSP 1 Score: 283.5 bits (724), Expect = 5.2e-73 Identity = 149/187 (79.68%), Postives = 153/187 (81.82%), Query Frame = 0
BLAST of Carg06130-RA vs. NCBI nr
Match: XP_023533331.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like, partial [Cucurbita pepo subsp. pepo] >XP_023534169.1 inactive protein RESTRICTED TEV MOVEMENT 2-like, partial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 191.8 bits (486), Expect = 2.1e-45 Identity = 118/134 (88.06%), Postives = 123/134 (91.79%), Query Frame = 0
BLAST of Carg06130-RA vs. NCBI nr
Match: XP_022988169.1 (inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucurbita maxima]) HSP 1 Score: 177.6 bits (449), Expect = 4.0e-41 Identity = 99/141 (70.21%), Postives = 105/141 (74.47%), Query Frame = 0
BLAST of Carg06130-RA vs. NCBI nr
Match: XP_023533466.1 (nucleoporin NUP159-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34 Identity = 85/133 (63.91%), Postives = 95/133 (71.43%), Query Frame = 0
BLAST of Carg06130-RA vs. NCBI nr
Match: XP_008451025.1 (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucumis melo]) HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31 Identity = 78/143 (54.55%), Postives = 93/143 (65.03%), Query Frame = 0
BLAST of Carg06130-RA vs. TAIR10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09 Identity = 38/135 (28.15%), Postives = 61/135 (45.19%), Query Frame = 0
BLAST of Carg06130-RA vs. TAIR10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08 Identity = 39/130 (30.00%), Postives = 57/130 (43.85%), Query Frame = 0
BLAST of Carg06130-RA vs. TAIR10
Match: AT5G37670.1 (HSP20-like chaperones superfamily protein) HSP 1 Score: 48.5 bits (114), Expect = 5.1e-06 Identity = 28/115 (24.35%), Postives = 55/115 (47.83%), Query Frame = 0
BLAST of Carg06130-RA vs. TAIR10
Match: AT5G12030.1 (heat shock protein 17.6A) HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05 Identity = 28/115 (24.35%), Postives = 56/115 (48.70%), Query Frame = 0
BLAST of Carg06130-RA vs. TAIR10
Match: AT5G12020.1 (17.6 kDa class II heat shock protein) HSP 1 Score: 45.8 bits (107), Expect = 3.3e-05 Identity = 30/115 (26.09%), Postives = 55/115 (47.83%), Query Frame = 0
BLAST of Carg06130-RA vs. Swiss-Prot
Match: sp|Q9FHQ3|HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=HSP15.7 PE=2 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 9.2e-05 Identity = 28/115 (24.35%), Postives = 55/115 (47.83%), Query Frame = 0
BLAST of Carg06130-RA vs. Swiss-Prot
Match: sp|O81822|HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP17.7 PE=2 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 3.5e-04 Identity = 28/115 (24.35%), Postives = 56/115 (48.70%), Query Frame = 0
BLAST of Carg06130-RA vs. Swiss-Prot
Match: sp|P29830|HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP17.6 PE=2 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 6.0e-04 Identity = 30/115 (26.09%), Postives = 55/115 (47.83%), Query Frame = 0
BLAST of Carg06130-RA vs. Swiss-Prot
Match: sp|Q53M11|HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP21.9 PE=2 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 6.0e-04 Identity = 27/93 (29.03%), Postives = 45/93 (48.39%), Query Frame = 0
BLAST of Carg06130-RA vs. Swiss-Prot
Match: sp|P19244|HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum OX=3888 GN=HSP22.7 PE=2 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 6.0e-04 Identity = 31/121 (25.62%), Postives = 57/121 (47.11%), Query Frame = 0
BLAST of Carg06130-RA vs. TrEMBL
Match: tr|A0A1S3BRB0|A0A1S3BRB0_CUCME (inactive protein RESTRICTED TEV MOVEMENT 2-like OS=Cucumis melo OX=3656 GN=LOC103492432 PE=3 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.5e-31 Identity = 78/143 (54.55%), Postives = 93/143 (65.03%), Query Frame = 0
BLAST of Carg06130-RA vs. TrEMBL
Match: tr|A0A0A0LWW1|A0A0A0LWW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600100 PE=3 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 2.3e-29 Identity = 76/143 (53.15%), Postives = 90/143 (62.94%), Query Frame = 0
BLAST of Carg06130-RA vs. TrEMBL
Match: tr|A0A0A0M2E7|A0A0A0M2E7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600110 PE=3 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 7.5e-28 Identity = 72/138 (52.17%), Postives = 87/138 (63.04%), Query Frame = 0
BLAST of Carg06130-RA vs. TrEMBL
Match: tr|A0A1S3BQ02|A0A1S3BQ02_CUCME (pollen-specific leucine-rich repeat extensin-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103492434 PE=3 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 1.4e-26 Identity = 70/130 (53.85%), Postives = 84/130 (64.62%), Query Frame = 0
BLAST of Carg06130-RA vs. TrEMBL
Match: tr|A0A0A0LZR6|A0A0A0LZR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600120 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 6.4e-11 Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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