Carg25054 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTCTCTTCACAAACAGTCAATGGCTACTTCAACAAGATAGCCAAACAGAAACAAAACAAAGCCCAAAGGACAAATCCCATCAACCTTTTACCCTCAACCTAAGCCCCAACAATGACAATGATTTGGAAGAACTCAACCTCATTGACATCTTTGGTCATGCTTGTAAAGAAGAAGCAGCTGAGCCTAGAGTTTTCTCTTGCAATTATTGCCAAAGGAAGTTTTTTAGCTCACAAGCTCTTGGTGGCCACCAAAATGCTCATAGTCGAGAGAGAAAGCTGGCTAAAGCAGGTTTTGAAGACCCTTTCATTGGATGCTATAGATCATCCTTTGGAGTTCAAACAAATTCTATGGTGCTTCGCAAGTTTTATAGGAAGCATGGAAGAGGGGAACTAGTTCGTGGGAGTTTTCGATCATGGCGCGGCGGTTGGAAGGCGTCTGCAGTCGACGTTGGGTCGTGGCATGAACAATATTCGAAGAGTACTAAACGTAATGAATCGCTCGAGCTAGAGTGTTTAGATTTGTCTCTTAAGCTGTGA ATGAGTCTCTTCACAAACAGTCAATGGCTACTTCAACAAGATAGCCAAACAGAAACAAAACAAAGCCCAAAGGACAAATCCCATCAACCTTTTACCCTCAACCTAAGCCCCAACAATGACAATGATTTGGAAGAACTCAACCTCATTGACATCTTTGGTCATGCTTGTAAAGAAGAAGCAGCTGAGCCTAGAGTTTTCTCTTGCAATTATTGCCAAAGGAAGTTTTTTAGCTCACAAGCTCTTGGTGGCCACCAAAATGCTCATAGTCGAGAGAGAAAGCTGGCTAAAGCAGGTTTTGAAGACCCTTTCATTGGATGCTATAGATCATCCTTTGGAGTTCAAACAAATTCTATGGTGCTTCGCAAGTTTTATAGGAAGCATGGAAGAGGGGAACTAGTTCGTGGGAGTTTTCGATCATGGCGCGGCGGTTGGAAGGCGTCTGCAGTCGACGTTGGGTCGTGGCATGAACAATATTCGAAGAGTACTAAACGTAATGAATCGCTCGAGCTAGAGTGTTTAGATTTGTCTCTTAAGCTGTGA ATGAGTCTCTTCACAAACAGTCAATGGCTACTTCAACAAGATAGCCAAACAGAAACAAAACAAAGCCCAAAGGACAAATCCCATCAACCTTTTACCCTCAACCTAAGCCCCAACAATGACAATGATTTGGAAGAACTCAACCTCATTGACATCTTTGGTCATGCTTGTAAAGAAGAAGCAGCTGAGCCTAGAGTTTTCTCTTGCAATTATTGCCAAAGGAAGTTTTTTAGCTCACAAGCTCTTGGTGGCCACCAAAATGCTCATAGTCGAGAGAGAAAGCTGGCTAAAGCAGGTTTTGAAGACCCTTTCATTGGATGCTATAGATCATCCTTTGGAGTTCAAACAAATTCTATGGTGCTTCGCAAGTTTTATAGGAAGCATGGAAGAGGGGAACTAGTTCGTGGGAGTTTTCGATCATGGCGCGGCGGTTGGAAGGCGTCTGCAGTCGACGTTGGGTCGTGGCATGAACAATATTCGAAGAGTACTAAACGTAATGAATCGCTCGAGCTAGAGTGTTTAGATTTGTCTCTTAAGCTGTGA MSLFTNSQWLLQQDSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHACKEEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPFIGCYRSSFGVQTNSMVLRKFYRKHGRGELVRGSFRSWRGGWKASAVDVGSWHEQYSKSTKRNESLELECLDLSLKL
BLAST of Carg25054 vs. NCBI nr
Match: XP_023548450.1 (zinc finger protein 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 90.9 bits (224), Expect = 4.8e-15 Identity = 84/235 (35.74%), Postives = 105/235 (44.68%), Query Frame = 0
BLAST of Carg25054 vs. NCBI nr
Match: ERN08449.1 (hypothetical protein AMTR_s00150p00049910 [Amborella trichopoda]) HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14 Identity = 48/84 (57.14%), Postives = 52/84 (61.90%), Query Frame = 0
BLAST of Carg25054 vs. NCBI nr
Match: PNX98449.1 (zinc finger protein 3-like [Trifolium pratense]) HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14 Identity = 58/151 (38.41%), Postives = 76/151 (50.33%), Query Frame = 0
BLAST of Carg25054 vs. NCBI nr
Match: PSS11198.1 (Zinc finger protein [Actinidia chinensis var. chinensis]) HSP 1 Score: 89.4 bits (220), Expect = 1.4e-14 Identity = 57/136 (41.91%), Postives = 67/136 (49.26%), Query Frame = 0
BLAST of Carg25054 vs. NCBI nr
Match: XP_022154830.1 (zinc finger protein 1-like [Momordica charantia]) HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14 Identity = 78/232 (33.62%), Postives = 105/232 (45.26%), Query Frame = 0
BLAST of Carg25054 vs. TAIR10
Match: AT1G80730.1 (zinc-finger protein 1) HSP 1 Score: 77.8 bits (190), Expect = 7.6e-15 Identity = 45/86 (52.33%), Postives = 50/86 (58.14%), Query Frame = 0
BLAST of Carg25054 vs. TAIR10
Match: AT5G25160.1 (zinc finger protein 3) HSP 1 Score: 71.2 bits (173), Expect = 7.1e-13 Identity = 36/63 (57.14%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Carg25054 vs. TAIR10
Match: AT1G24625.1 (zinc finger protein 7) HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12 Identity = 42/85 (49.41%), Postives = 51/85 (60.00%), Query Frame = 0
BLAST of Carg25054 vs. TAIR10
Match: AT5G10970.1 (C2H2 and C2HC zinc fingers superfamily protein) HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12 Identity = 42/97 (43.30%), Postives = 52/97 (53.61%), Query Frame = 0
BLAST of Carg25054 vs. TAIR10
Match: AT1G66140.1 (zinc finger protein 4) HSP 1 Score: 68.9 bits (167), Expect = 3.5e-12 Identity = 45/92 (48.91%), Postives = 49/92 (53.26%), Query Frame = 0
BLAST of Carg25054 vs. Swiss-Prot
Match: sp|Q42485|ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13 Identity = 45/86 (52.33%), Postives = 50/86 (58.14%), Query Frame = 0
BLAST of Carg25054 vs. Swiss-Prot
Match: sp|Q39262|ZFP3_ARATH (Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11 Identity = 36/63 (57.14%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Carg25054 vs. Swiss-Prot
Match: sp|Q39266|ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.2e-11 Identity = 42/85 (49.41%), Postives = 51/85 (60.00%), Query Frame = 0
BLAST of Carg25054 vs. Swiss-Prot
Match: sp|Q39261|ZFP2_ARATH (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 6.3e-11 Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0
BLAST of Carg25054 vs. Swiss-Prot
Match: sp|Q39263|ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2) HSP 1 Score: 68.9 bits (167), Expect = 6.3e-11 Identity = 45/92 (48.91%), Postives = 49/92 (53.26%), Query Frame = 0
BLAST of Carg25054 vs. TrEMBL
Match: tr|A0A2K3N626|A0A2K3N626_TRIPR (Zinc finger protein 3-like OS=Trifolium pratense OX=57577 GN=L195_g021697 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 9.2e-15 Identity = 58/151 (38.41%), Postives = 76/151 (50.33%), Query Frame = 0
BLAST of Carg25054 vs. TrEMBL
Match: tr|W1PL03|W1PL03_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00150p00049910 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 9.2e-15 Identity = 48/84 (57.14%), Postives = 52/84 (61.90%), Query Frame = 0
BLAST of Carg25054 vs. TrEMBL
Match: tr|A0A2R6QMR5|A0A2R6QMR5_ACTCH (Zinc finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc15471 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 9.2e-15 Identity = 57/136 (41.91%), Postives = 67/136 (49.26%), Query Frame = 0
BLAST of Carg25054 vs. TrEMBL
Match: tr|A0A1S3VCV9|A0A1S3VCV9_VIGRR (zinc finger protein 3-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106773734 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14 Identity = 62/164 (37.80%), Postives = 88/164 (53.66%), Query Frame = 0
BLAST of Carg25054 vs. TrEMBL
Match: tr|A0A2I0VMC4|A0A2I0VMC4_9ASPA (Zinc finger protein 3 OS=Dendrobium catenatum OX=906689 GN=ZFP3 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 2.0e-14 Identity = 49/100 (49.00%), Postives = 60/100 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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