Carg02816-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGATCCTGATTACTTTTTCGCTCGTCCTTTTGGCCTGTTCTCACTGGAACCTCTGCCGACGGAACAGAGGCAGAGACGATTTGGAGAACGGCGGCAGTAACGAAGCTAAAATCGACTCGGAGATGCGGTCTGAGAAGGCTAACTATGACGATAACGTTCTGGTTATAATGGCCGGAAACCAGAAACCGACGTTCTTAGCCAGGCCTGTGTGCGTACGAATTTCCTCCGCCGTGAAAACCGCCGTTGAGGAGAAAAAGACAGCGGAAAATTCGGAGAAATCGACCAAAGTGTATGATCGAGAAGTTTCTTCTGAAGCGAACACAGTCATTCAGGAATCCGGCGAGGAAGAACACGAGTGA ATGATGATCCTGATTACTTTTTCGCTCGTCCTTTTGGCCTGTTCTCACTGGAACCTCTGCCGACGGAACAGAGGCAGAGACGATTTGGAGAACGGCGGCAGTAACGAAGCTAAAATCGACTCGGAGATGCGGTCTGAGAAGGCTAACTATGACGATAACGTTCTGGTTATAATGGCCGGAAACCAGAAACCGACGTTCTTAGCCAGGCCTGTGTGCGTACGAATTTCCTCCGCCGTGAAAACCGCCGTTGAGGAGAAAAAGACAGCGGAAAATTCGGAGAAATCGACCAAAGTGTATGATCGAGAAGTTTCTTCTGAAGCGAACACAGTCATTCAGGAATCCGGCGAGGAAGAACACGAGTGA ATGATGATCCTGATTACTTTTTCGCTCGTCCTTTTGGCCTGTTCTCACTGGAACCTCTGCCGACGGAACAGAGGCAGAGACGATTTGGAGAACGGCGGCAGTAACGAAGCTAAAATCGACTCGGAGATGCGGTCTGAGAAGGCTAACTATGACGATAACGTTCTGGTTATAATGGCCGGAAACCAGAAACCGACGTTCTTAGCCAGGCCTGTGTGCGTACGAATTTCCTCCGCCGTGAAAACCGCCGTTGAGGAGAAAAAGACAGCGGAAAATTCGGAGAAATCGACCAAAGTGTATGATCGAGAAGTTTCTTCTGAAGCGAACACAGTCATTCAGGAATCCGGCGAGGAAGAACACGAGTGA MMILITFSLVLLACSHWNLCRRNRGRDDLENGGSNEAKIDSEMRSEKANYDDNVLVIMAGNQKPTFLARPVCVRISSAVKTAVEEKKTAENSEKSTKVYDREVSSEANTVIQESGEEEHE
BLAST of Carg02816-RA vs. NCBI nr
Match: XP_022937002.1 (protein GLUTAMINE DUMPER 5 [Cucurbita moschata]) HSP 1 Score: 223.8 bits (569), Expect = 3.2e-55 Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0
BLAST of Carg02816-RA vs. NCBI nr
Match: XP_022977126.1 (protein GLUTAMINE DUMPER 5-like [Cucurbita maxima]) HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53 Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0
BLAST of Carg02816-RA vs. NCBI nr
Match: XP_023536322.1 (protein GLUTAMINE DUMPER 5-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53 Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 0
BLAST of Carg02816-RA vs. NCBI nr
Match: XP_004151217.2 (PREDICTED: protein GLUTAMINE DUMPER 5-like [Cucumis sativus] >KGN55404.1 hypothetical protein Csa_4G650230 [Cucumis sativus]) HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28 Identity = 74/116 (63.79%), Postives = 90/116 (77.59%), Query Frame = 0
BLAST of Carg02816-RA vs. NCBI nr
Match: XP_008452812.1 (PREDICTED: protein GLUTAMINE DUMPER 5-like [Cucumis melo]) HSP 1 Score: 132.9 bits (333), Expect = 7.3e-28 Identity = 75/120 (62.50%), Postives = 91/120 (75.83%), Query Frame = 0
BLAST of Carg02816-RA vs. TAIR10
Match: AT5G24920.1 (glutamine dumper 5) HSP 1 Score: 51.6 bits (122), Expect = 3.9e-07 Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 0
BLAST of Carg02816-RA vs. TAIR10
Match: AT2G24762.1 (glutamine dumper 4) HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05 Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 0
BLAST of Carg02816-RA vs. TAIR10
Match: AT4G25760.1 (glutamine dumper 2) HSP 1 Score: 44.7 bits (104), Expect = 4.8e-05 Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 0
BLAST of Carg02816-RA vs. TAIR10
Match: AT5G57685.1 (glutamine dumper 3) HSP 1 Score: 44.3 bits (103), Expect = 6.2e-05 Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 0
BLAST of Carg02816-RA vs. TAIR10
Match: AT4G31730.1 (glutamine dumper 1) HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04 Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 0
BLAST of Carg02816-RA vs. Swiss-Prot
Match: sp|Q3E965|GDU5_ARATH (Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana OX=3702 GN=GDU5 PE=2 SV=2) HSP 1 Score: 51.6 bits (122), Expect = 7.0e-06 Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 0
BLAST of Carg02816-RA vs. Swiss-Prot
Match: sp|Q8S8A0|GDU4_ARATH (Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana OX=3702 GN=GDU4 PE=2 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 3.9e-04 Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 0
BLAST of Carg02816-RA vs. Swiss-Prot
Match: sp|Q9SW07|GDU2_ARATH (Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana OX=3702 GN=GDU2 PE=2 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 8.6e-04 Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 0
BLAST of Carg02816-RA vs. TrEMBL
Match: tr|A0A0A0L2Z5|A0A0A0L2Z5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G650230 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 7.5e-29 Identity = 74/116 (63.79%), Postives = 90/116 (77.59%), Query Frame = 0
BLAST of Carg02816-RA vs. TrEMBL
Match: tr|A0A1S3BUS5|A0A1S3BUS5_CUCME (protein GLUTAMINE DUMPER 5-like OS=Cucumis melo OX=3656 GN=LOC103493723 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 4.9e-28 Identity = 75/120 (62.50%), Postives = 91/120 (75.83%), Query Frame = 0
BLAST of Carg02816-RA vs. TrEMBL
Match: tr|A0A2K2A8X0|A0A2K2A8X0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G267900v3 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 5.0e-09 Identity = 50/127 (39.37%), Postives = 79/127 (62.20%), Query Frame = 0
BLAST of Carg02816-RA vs. TrEMBL
Match: tr|B9RNR2|B9RNR2_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0920050 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08 Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 0
BLAST of Carg02816-RA vs. TrEMBL
Match: tr|A0A2I4FPQ0|A0A2I4FPQ0_9ROSI (protein GLUTAMINE DUMPER 5-like OS=Juglans regia OX=51240 GN=LOC109000991 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 4.3e-08 Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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