Carg02781 (gene) Silver-seed gourd

Overview
NameCarg02781
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRNA-binding protein 2-like isoform X1
LocationCucurbita_argyrosperma_scaffold_008 : 38100 .. 38402 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGTAAGAATTTTATCTTTAGCATAAAATATATTTATTTAATGAGTGCTTTACATGACTTGTGACTGTCGAAAAATTCATCAGGACCGGTAG

mRNA sequence

ATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGACCGGTAG

Coding sequence (CDS)

ATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGACCGGTAG

Protein sequence

MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR
Homology
[Close]
BLAST of Carg02781 vs. NCBI nr
Match: XP_022936248.1 (nuclear speckle RNA-binding protein A-like [Cucurbita moschata])

HSP 1 Score: 75.9 bits (185), Expect = 6.5e-11
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 1  MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP 54
          MRCEVWSTWFVDLTDSANSILQANVQLLAHAAG     G   Y+E   +++YP
Sbjct: 8  MRCEVWSTWFVDLTDSANSILQANVQLLAHAAGRPVAYG---YTEVGTISNYP 57

[Close]
BLAST of Carg02781 vs. NCBI nr
Match: XP_008452748.1 (PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 29 AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD 73
          A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D
Sbjct: 13 ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRD 56

[Close]
BLAST of Carg02781 vs. NCBI nr
Match: XP_008452749.1 (PREDICTED: RNA-binding protein 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-09
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 33 GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD 73
          GSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D
Sbjct: 16 GSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRD 55

[Close]
BLAST of Carg02781 vs. NCBI nr
Match: XP_022982403.1 (RNA-binding protein 2-like [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 6.1e-09
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 32 AGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQK 71
          AGSVARSGLS YSEAPPLTSYPNSTSID W IPPD  QK
Sbjct: 16 AGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLQK 54

[Close]
BLAST of Carg02781 vs. NCBI nr
Match: XP_023522732.1 (uncharacterized protein LOC111786735, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 6.1e-09
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 32 AGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQK 71
          AGSVARSGLS YSEAPPLTSYPNSTSID W IPPD  QK
Sbjct: 16 AGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLQK 54

[Close]
BLAST of Carg02781 vs. TrEMBL
Match: tr|A0A1S3BU06|A0A1S3BU06_CUCME (RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-10
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 29 AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD 73
          A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D
Sbjct: 13 ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRD 56

[Close]
BLAST of Carg02781 vs. TrEMBL
Match: tr|A0A1S3BUL5|A0A1S3BUL5_CUCME (RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 33 GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD 73
          GSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D
Sbjct: 16 GSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRD 55

[Close]
BLAST of Carg02781 vs. TrEMBL
Match: tr|A0A0A0L0S1|A0A0A0L0S1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646270 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 29 AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYI-PPDDFQKHD 73
          A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+  PP D+   D
Sbjct: 13 ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPPDYMPRD 57

The following BLAST results are available for this feature:
BLAST of Carg02781 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022936248.16.5e-1171.70nuclear speckle RNA-binding protein A-like [Cucurbita moschata][more]
XP_008452748.11.2e-0977.27PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo][more]
XP_008452749.14.6e-0980.00PREDICTED: RNA-binding protein 2-like isoform X2 [Cucumis melo][more]
XP_022982403.16.1e-0987.18RNA-binding protein 2-like [Cucurbita maxima][more]
XP_023522732.16.1e-0987.18uncharacterized protein LOC111786735, partial [Cucurbita pepo subsp. pepo][more]
BLAST of Carg02781 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg02781 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg02781 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BU06|A0A1S3BU06_CUCME8.1e-1077.27RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE... [more]
tr|A0A1S3BUL5|A0A1S3BUL5_CUCME3.1e-0980.00RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE... [more]
tr|A0A0A0L0S1|A0A0A0L0S1_CUCSA2.0e-0875.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646270 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02781-RACarg02781-RAmRNA