Carg14758-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCTCCACTTTTTCCAATCATCTCACACTCCAAATCGCCTTTTTCCTCATCGCTTTTCTCCAGATCTCTGCCTCTTCCTCCAATGGCGAAAGCAGCCGCAGTCGCTCTCTCCTTTCTGCTTCTGTTCCTCTCAGGTTCGTTCTCCTGACCTCTTCGAATTCCGCGTCGTTTTTTGCGTACCTAACTTTCCTTCTTTCTTCTTTCTTCTTCCAATTCTTTTTTCAGGAGATCTCTTGGCGGTAAATGGATATCAGGTGAATCGATTGTTATAGAAATGCAGAGCAACAGATTAGAATAATCCGATGAAATCTGAATGATTTTTGTTTTTTGTTTTTGTTTGCAGAAGACGTGGTGCGTTGCGAGGCCTTCGTCGGATCACGCGACGCTGTTAGCGAATATCAATTATGCTTGTTCACAAGTGGATTGCAGGATTATGCAGAAAGGATGCCCCTGCTTTTATCCTGATAATCTGATTAACCATGCCTCCATCGCTATGAATCTGTATTACAATTCGAAAGGGAAGAATCAGTGGAACTGTGATTTCAGAGGATCTGGTCTCATCGTCATCACTGATCCAAGTTAGTTCATGATTTAAACAGATTTTGCTGTTGTGTTTGTCCTTTTGTTCTTGATTTTGATTTTGTGGTTCGATTTTCGCTGCTGCAGGTTATGGGAACTGCCTTTACCCTTGAATTGAAGTTTGAAGCATAGAAGTGTAGGAGAATCACACAGCTCAAAAGTAAATTTTATTGTTAGTTTATTGATTATATATACTTAGGTGGGAAGAGATAGTTACTGAATTAATGCTATTTATCTTTGATTCAATTCAATGCCAAAATTAAATTAAATTAGGGTT TTCTCCACTTTTTCCAATCATCTCACACTCCAAATCGCCTTTTTCCTCATCGCTTTTCTCCAGATCTCTGCCTCTTCCTCCAATGGCGAAAGCAGCCGCAGTCGCTCTCTCCTTTCTGCTTCTGTTCCTCTCAGGAGATCTCTTGGCGGTAAATGGATATCAGAAGACGTGGTGCGTTGCGAGGCCTTCGTCGGATCACGCGACGCTGTTAGCGAATATCAATTATGCTTGTTCACAAGTGGATTGCAGGATTATGCAGAAAGGATGCCCCTGCTTTTATCCTGATAATCTGATTAACCATGCCTCCATCGCTATGAATCTGTATTACAATTCGAAAGGGAAGAATCAGTGGAACTGTGATTTCAGAGGATCTGGTCTCATCGTCATCACTGATCCAAGTTATGGGAACTGCCTTTACCCTTGAATTGAAGTTTGAAGCATAGAAGTGTAGGAGAATCACACAGCTCAAAAGTAAATTTTATTGTTAGTTTATTGATTATATATACTTAGGTGGGAAGAGATAGTTACTGAATTAATGCTATTTATCTTTGATTCAATTCAATGCCAAAATTAAATTAAATTAGGGTT ATGGCGAAAGCAGCCGCAGTCGCTCTCTCCTTTCTGCTTCTGTTCCTCTCAGGAGATCTCTTGGCGGTAAATGGATATCAGAAGACGTGGTGCGTTGCGAGGCCTTCGTCGGATCACGCGACGCTGTTAGCGAATATCAATTATGCTTGTTCACAAGTGGATTGCAGGATTATGCAGAAAGGATGCCCCTGCTTTTATCCTGATAATCTGATTAACCATGCCTCCATCGCTATGAATCTGTATTACAATTCGAAAGGGAAGAATCAGTGGAACTGTGATTTCAGAGGATCTGGTCTCATCGTCATCACTGATCCAAGTTATGGGAACTGCCTTTACCCTTGA MAKAAAVALSFLLLFLSGDLLAVNGYQKTWCVARPSSDHATLLANINYACSQVDCRIMQKGCPCFYPDNLINHASIAMNLYYNSKGKNQWNCDFRGSGLIVITDPSYGNCLYP
BLAST of Carg14758-RA vs. NCBI nr
Match: XP_022941529.1 (glucan endo-1,3-beta-glucosidase-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 243.8 bits (621), Expect = 2.8e-61 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Carg14758-RA vs. NCBI nr
Match: XP_022982185.1 (major pollen allergen Ole e 10-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 238.4 bits (607), Expect = 1.2e-59 Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = 0
BLAST of Carg14758-RA vs. NCBI nr
Match: XP_022941530.1 (major pollen allergen Ole e 10-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 236.9 bits (603), Expect = 3.4e-59 Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0
BLAST of Carg14758-RA vs. NCBI nr
Match: XP_023525198.1 (major pollen allergen Ole e 10-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 234.6 bits (597), Expect = 1.7e-58 Identity = 108/112 (96.43%), Postives = 109/112 (97.32%), Query Frame = 0
BLAST of Carg14758-RA vs. NCBI nr
Match: XP_022982186.1 (major pollen allergen Ole e 10-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 231.5 bits (589), Expect = 1.4e-57 Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0
BLAST of Carg14758-RA vs. TAIR10
Match: AT1G78520.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 151.4 bits (381), Expect = 3.4e-37 Identity = 70/115 (60.87%), Postives = 84/115 (73.04%), Query Frame = 0
BLAST of Carg14758-RA vs. TAIR10
Match: AT2G43670.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 128.3 bits (321), Expect = 3.1e-30 Identity = 58/117 (49.57%), Postives = 85/117 (72.65%), Query Frame = 0
BLAST of Carg14758-RA vs. TAIR10
Match: AT4G09462.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 106.3 bits (264), Expect = 1.3e-23 Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 0
BLAST of Carg14758-RA vs. TAIR10
Match: AT3G28250.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 103.2 bits (256), Expect = 1.1e-22 Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 0
BLAST of Carg14758-RA vs. TAIR10
Match: AT4G09464.1 (Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 102.4 bits (254), Expect = 1.8e-22 Identity = 49/113 (43.36%), Postives = 67/113 (59.29%), Query Frame = 0
BLAST of Carg14758-RA vs. Swiss-Prot
Match: sp|P52409|E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum OX=4565 GN=GLC1 PE=2 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 6.2e-20 Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 0
BLAST of Carg14758-RA vs. Swiss-Prot
Match: sp|Q94G86|ALL9_OLEEU (Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea OX=4146 GN=OLE9 PE=1 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 8.1e-20 Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 0
BLAST of Carg14758-RA vs. Swiss-Prot
Match: sp|Q84V39|ALL10_OLEEU (Major pollen allergen Ole e 10 OS=Olea europaea OX=4146 PE=1 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 9.8e-18 Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 0
BLAST of Carg14758-RA vs. Swiss-Prot
Match: sp|O65399|E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3) HSP 1 Score: 90.1 bits (222), Expect = 1.7e-17 Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 0
BLAST of Carg14758-RA vs. Swiss-Prot
Match: sp|Q9ZU91|E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g01630 PE=2 SV=2) HSP 1 Score: 88.2 bits (217), Expect = 6.4e-17 Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 0
BLAST of Carg14758-RA vs. TrEMBL
Match: tr|A0A1S3BUY7|A0A1S3BUY7_CUCME (glucan endo-1,3-beta-D-glucosidase OS=Cucumis melo OX=3656 GN=LOC103493468 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 6.3e-46 Identity = 92/117 (78.63%), Postives = 103/117 (88.03%), Query Frame = 0
BLAST of Carg14758-RA vs. TrEMBL
Match: tr|A0A0A0L4I1|A0A0A0L4I1_CUCSA (Hydrolase, hydrolyzing O-glycosyl compounds OS=Cucumis sativus OX=3659 GN=Csa_4G622750 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 8.3e-46 Identity = 93/117 (79.49%), Postives = 103/117 (88.03%), Query Frame = 0
BLAST of Carg14758-RA vs. TrEMBL
Match: tr|A0A2I0JDG8|A0A2I0JDG8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_025342 PE=4 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 4.1e-45 Identity = 88/116 (75.86%), Postives = 99/116 (85.34%), Query Frame = 0
BLAST of Carg14758-RA vs. TrEMBL
Match: tr|A0A1R3JCR2|A0A1R3JCR2_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17447 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 5.9e-44 Identity = 86/114 (75.44%), Postives = 101/114 (88.60%), Query Frame = 0
BLAST of Carg14758-RA vs. TrEMBL
Match: tr|I1M2T7|I1M2T7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100784427 PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 7.8e-44 Identity = 84/112 (75.00%), Postives = 96/112 (85.71%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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