CsaV3_7G029510.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G029510.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7 : 18643878 .. 18644527 (-)
Sequence length	648

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACTTTCAACGATGTCACTGGTGTCGTAAATCTCGACCTCAATCATCATTTTTCTTTTCGTGGATTTGGATGGCCTCGTATTGGAACCCCAAATACCGATGGTAGCCTCGCATCAACCGTGAACAACCATGCAGAAGCACCAACAGGGATTGCTCCTGTTGGGCTTGACACTCCAATCAACAAAGGGGACAAAGTTTCGACTTTTGGTCTCGAGATTATTAAGCAGATCGAAAGTGGTGTTGTTGTTTCTAAGGATCATGAGATTAATTTGAAGAGTGGTGGCAACATTGCTCTTTCTCACGGTGGAAAAATTAGTCTAAAGGGCAAAGGTGGTGTTAGTGTTTCCATTAATGGTGGTAAATTTGGTCTAAAGAGCAGTGGTAATGTTCTTGTTTCTCATGGATTTGAAACTTCAATGAGCAAAAATAACAAAGGTTTGTCTTTTGGTGTTGAAATTAAAAAGGATCATGTTGCATCTCTTGGTCTCAAAGCTCCTAAGGGAAAGCTTAATTTTGGTGTTTCTCATGGTGGCAATATTAGTATAAAGAAGAGAGGTAGTATTGTTTCTAAGGGTGGCAAAATTGGTTTGAAGAGCCATGCCAAAGTTTTTGTTTCTCATGGTCTTGGAATTCATGGTAAAATGTAG

mRNA sequence

GCAACTTTCAACGATGTCACTGGTGTCGTAAATCTCGACCTCAATCATCATTTTTCTTTTCGTGGATTTGGATGGCCTCGTATTGGAACCCCAAATACCGATGGTAGCCTCGCATCAACCGTGAACAACCATGCAGAAGCACCAACAGGGATTGCTCCTGTTGGGCTTGACACTCCAATCAACAAAGGGGACAAAGTTTCGACTTTTGGTCTCGAGATTATTAAGCAGATCGAAAGTGGTGTTGTTGTTTCTAAGGATCATGAGATTAATTTGAAGAGTGGTGGCAACATTGCTCTTTCTCACGGTGGAAAAATTAGTCTAAAGGGCAAAGGTGGTGTTAGTGTTTCCATTAATGGTGGTAAATTTGGTCTAAAGAGCAGTGGTAATGTTCTTGTTTCTCATGGATTTGAAACTTCAATGAGCAAAAATAACAAAGGTTTGTCTTTTGGTGTTGAAATTAAAAAGGATCATGTTGCATCTCTTGGTCTCAAAGCTCCTAAGGGAAAGCTTAATTTTGGTGTTTCTCATGGTGGCAATATTAGTATAAAGAAGAGAGGTAGTATTGTTTCTAAGGGTGGCAAAATTGGTTTGAAGAGCCATGCCAAAGTTTTTGTTTCTCATGGTCTTGGAATTCATGGTAAAATGTAG

Coding sequence (CDS)

GCAACTTTCAACGATGTCACTGGTGTCGTAAATCTCGACCTCAATCATCATTTTTCTTTTCGTGGATTTGGATGGCCTCGTATTGGAACCCCAAATACCGATGGTAGCCTCGCATCAACCGTGAACAACCATGCAGAAGCACCAACAGGGATTGCTCCTGTTGGGCTTGACACTCCAATCAACAAAGGGGACAAAGTTTCGACTTTTGGTCTCGAGATTATTAAGCAGATCGAAAGTGGTGTTGTTGTTTCTAAGGATCATGAGATTAATTTGAAGAGTGGTGGCAACATTGCTCTTTCTCACGGTGGAAAAATTAGTCTAAAGGGCAAAGGTGGTGTTAGTGTTTCCATTAATGGTGGTAAATTTGGTCTAAAGAGCAGTGGTAATGTTCTTGTTTCTCATGGATTTGAAACTTCAATGAGCAAAAATAACAAAGGTTTGTCTTTTGGTGTTGAAATTAAAAAGGATCATGTTGCATCTCTTGGTCTCAAAGCTCCTAAGGGAAAGCTTAATTTTGGTGTTTCTCATGGTGGCAATATTAGTATAAAGAAGAGAGGTAGTATTGTTTCTAAGGGTGGCAAAATTGGTTTGAAGAGCCATGCCAAAGTTTTTGTTTCTCATGGTCTTGGAATTCATGGTAAAATGTAG

Protein sequence

ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNNHAEAPTGIAPVGLDTPINKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGKGGVSVSINGGKFGLKSSGNVLVSHGFETSMSKNNKGLSFGVEIKKDHVASLGLKAPKGKLNFGVSHGGNISIKKRGSIVSKGGKIGLKSHAKVFVSHGLGIHGKM

Homology

[Close]

BLAST of CsaV3_7G029510.1 vs. NCBI nr
Match: KGN44965.1 (hypothetical protein Csa_7G398750 [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNNHAEAPTGIAPVGLDTPI 60
           ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNNHAEAPTGIAPVGLDTPI
Sbjct: 25  ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNNHAEAPTGIAPVGLDTPI 84

Query: 61  NKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXXXXXXXXXX 120
           NKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 85  NKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXXXXXXXXXX 144

Query: 121 XXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKAPKGKLNFGVSHGGNI 180
           XXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKAPKGKLNFGVSHGGNI
Sbjct: 145 XXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKAPKGKLNFGVSHGGNI 204

Query: 181 SIKKRGSIVSKGGKIGLKSHAKVFVSHGLGIHGKM 216
           SIKKRGSIVSKGGKIGLKSHAKVFVSHGLGIHGKM
Sbjct: 205 SIKKRGSIVSKGGKIGLKSHAKVFVSHGLGIHGKM 239

[Close]

BLAST of CsaV3_7G029510.1 vs. NCBI nr
Match: KGN44969.1 (hypothetical protein Csa_7G399280 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 2.2e-43
Identity = 113/192 (58.85%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNN--HAEAPTGIAPVGLDT 60
           ATF+D TGVVN  LNH FSFR FGWP IGTP+ DGS+ STV    HAEAP GIAPVGL+T
Sbjct: 28  ATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDVDGSITSTVKKQIHAEAPAGIAPVGLET 87

Query: 61  PINKGDKVSTFGLEIIKQIE-SGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXXXXXXX 120
            INK DKV ++ L+IIKQI+  G VVS DHE NL SG N                XXXXX
Sbjct: 88  MINKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHGGKVSVKSKGSXXXXX 147

Query: 121 XXXXXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKAPKGKLNFGVSHG 180
           X                        N KGLSFGVEIKKDH A+LGLKA KGK+N GVSHG
Sbjct: 148 XGEINGLKRKI-------------HNYKGLSFGVEIKKDHGATLGLKAHKGKVNVGVSHG 206

Query: 181 GNISIKKRGSIV 190
           GNISI KRGSIV
Sbjct: 208 GNISINKRGSIV 206

[Close]

BLAST of CsaV3_7G029510.1 vs. NCBI nr
Match: KGN44966.1 (hypothetical protein Csa_7G398760 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 3.2e-42
Identity = 111/191 (58.12%), Postives = 121/191 (63.35%), Query Frame = 0


Query: 1   ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNN--HAEAPTGIAPVGLDT 60
           ATF+D TGVVN  LNH FSFR FGWP IGTPN DGS+ STV     AEAP GIAPVGL+T
Sbjct: 7   ATFSDATGVVNAGLNHQFSFRAFGWPHIGTPNVDGSITSTVEKQIRAEAPAGIAPVGLET 66

Query: 61  PINKGDKVSTFGLEIIKQIE-SGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXXXXXXX 120
            INK DKV ++ L+IIKQI+  G VVS DHE NL SG N                XXXXX
Sbjct: 67  MINKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHGGKVSVKSKGSXXXXX 126

Query: 121 XXXXXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKAPKGKLNFGVSHG 180
           X                        N KGLSFGVEIKKDH A+LGLKA KGK+N GVSHG
Sbjct: 127 XGEINGLKRKI-------------HNYKGLSFGVEIKKDHGANLGLKAHKGKVNVGVSHG 184

Query: 181 GNISIKKRGSI 189
           GNIS+ KRGSI
Sbjct: 187 GNISMNKRGSI 184

[Close]

BLAST of CsaV3_7G029510.1 vs. NCBI nr
Match: KGN44971.1 (hypothetical protein Csa_7G404790 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-10
Identity = 93/190 (48.95%), Postives = 113/190 (59.47%), Query Frame = 0


Query: 1   ATFNDVTGVVNLDLNHHFSFRG-FGWPRIGT-PNTDGSLASTV---NNHAEAPTG-IAPV 60
           ATF+DVTG++ L ++H +SF    G   +G   NT GS AS+V    + A+APT  IAP 
Sbjct: 27  ATFHDVTGILGLGIHHRYSFHNTIGSGGVGLFSNTGGSTASSVVDIESPAQAPTSEIAPA 86

Query: 61  GLDT--PINKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXX 120
           GL+T   IN       F             +SKDH+I+ KSG N                
Sbjct: 87  GLETDPAINNSHDFEGF-------------ISKDHDIHWKSGSN----------IALSHG 146

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKA--PKGKL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXX S+NNK LS G+EI+K +VASLGLKA   K  +
Sbjct: 147 XXXXXXXXXXXXXXXXXXXXXXXXXXXXSRNNKALSSGIEIEKKNVASLGLKAHTRKSNI 193

[Close]

BLAST of CsaV3_7G029510.1 vs. TrEMBL
Match: tr|A0A0A0K5J0|A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 7.5e-88
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNNHAEAPTGIAPVGLDTPI 60
           ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNNHAEAPTGIAPVGLDTPI
Sbjct: 25  ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNNHAEAPTGIAPVGLDTPI 84

Query: 61  NKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXXXXXXXXXX 120
           NKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 85  NKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXXXXXXXXXX 144

Query: 121 XXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKAPKGKLNFGVSHGGNI 180
           XXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKAPKGKLNFGVSHGGNI
Sbjct: 145 XXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKAPKGKLNFGVSHGGNI 204

Query: 181 SIKKRGSIVSKGGKIGLKSHAKVFVSHGLGIHGKM 216
           SIKKRGSIVSKGGKIGLKSHAKVFVSHGLGIHGKM
Sbjct: 205 SIKKRGSIVSKGGKIGLKSHAKVFVSHGLGIHGKM 239

[Close]

BLAST of CsaV3_7G029510.1 vs. TrEMBL
Match: tr|A0A0A0K7W7|A0A0A0K7W7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 113/192 (58.85%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNN--HAEAPTGIAPVGLDT 60
           ATF+D TGVVN  LNH FSFR FGWP IGTP+ DGS+ STV    HAEAP GIAPVGL+T
Sbjct: 28  ATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDVDGSITSTVKKQIHAEAPAGIAPVGLET 87

Query: 61  PINKGDKVSTFGLEIIKQIE-SGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXXXXXXX 120
            INK DKV ++ L+IIKQI+  G VVS DHE NL SG N                XXXXX
Sbjct: 88  MINKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHGGKVSVKSKGSXXXXX 147

Query: 121 XXXXXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKAPKGKLNFGVSHG 180
           X                        N KGLSFGVEIKKDH A+LGLKA KGK+N GVSHG
Sbjct: 148 XGEINGLKRKI-------------HNYKGLSFGVEIKKDHGATLGLKAHKGKVNVGVSHG 206

Query: 181 GNISIKKRGSIV 190
           GNISI KRGSIV
Sbjct: 208 GNISINKRGSIV 206

[Close]

BLAST of CsaV3_7G029510.1 vs. TrEMBL
Match: tr|A0A0A0KAZ8|A0A0A0KAZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398760 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42
Identity = 111/191 (58.12%), Postives = 121/191 (63.35%), Query Frame = 0


Query: 1   ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNN--HAEAPTGIAPVGLDT 60
           ATF+D TGVVN  LNH FSFR FGWP IGTPN DGS+ STV     AEAP GIAPVGL+T
Sbjct: 7   ATFSDATGVVNAGLNHQFSFRAFGWPHIGTPNVDGSITSTVEKQIRAEAPAGIAPVGLET 66

Query: 61  PINKGDKVSTFGLEIIKQIE-SGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXXXXXXX 120
            INK DKV ++ L+IIKQI+  G VVS DHE NL SG N                XXXXX
Sbjct: 67  MINKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHGGKVSVKSKGSXXXXX 126

Query: 121 XXXXXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKAPKGKLNFGVSHG 180
           X                        N KGLSFGVEIKKDH A+LGLKA KGK+N GVSHG
Sbjct: 127 XGEINGLKRKI-------------HNYKGLSFGVEIKKDHGANLGLKAHKGKVNVGVSHG 184

Query: 181 GNISIKKRGSI 189
           GNIS+ KRGSI
Sbjct: 187 GNISMNKRGSI 184

[Close]

BLAST of CsaV3_7G029510.1 vs. TrEMBL
Match: tr|A0A0A0KB06|A0A0A0KB06_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G404790 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 93/190 (48.95%), Postives = 113/190 (59.47%), Query Frame = 0


Query: 1   ATFNDVTGVVNLDLNHHFSFRG-FGWPRIGT-PNTDGSLASTV---NNHAEAPTG-IAPV 60
           ATF+DVTG++ L ++H +SF    G   +G   NT GS AS+V    + A+APT  IAP 
Sbjct: 27  ATFHDVTGILGLGIHHRYSFHNTIGSGGVGLFSNTGGSTASSVVDIESPAQAPTSEIAPA 86

Query: 61  GLDT--PINKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNXXXXXXXXXXXXXXXX 120
           GL+T   IN       F             +SKDH+I+ KSG N                
Sbjct: 87  GLETDPAINNSHDFEGF-------------ISKDHDIHWKSGSN----------IALSHG 146

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXMSKNNKGLSFGVEIKKDHVASLGLKA--PKGKL 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXX S+NNK LS G+EI+K +VASLGLKA   K  +
Sbjct: 147 XXXXXXXXXXXXXXXXXXXXXXXXXXXXSRNNKALSSGIEIEKKNVASLGLKAHTRKSNI 193

[Close]

BLAST of CsaV3_7G029510.1 vs. TrEMBL
Match: tr|A0A0A0K5G8|A0A0A0K5G8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-04
Identity = 40/97 (41.24%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 1   ATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLASTVNNHAEAPTGIAPVGLDTPI 60
           ATF DVTG  + +L    SF   G   +G     GS A    N  E   GIAPVG DTP 
Sbjct: 27  ATFKDVTGFFDFNLG---SFGSGGAGIMGGTKNGGSPA----NAPEMAPGIAPVGFDTPT 86

Query: 61  NKGDK-VSTFGLEIIKQIESGVVVSKD-HEINLKSGG 96
           N  D   S+F  +  K I  GV +S   H++NLK  G
Sbjct: 87  NNEDSGASSFDFDFSKNINGGVDLSNGAHKLNLKGSG 116

The following BLAST results are available for this feature:

BLAST of CsaV3_7G029510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44965.1	1.1e-87	100.00	hypothetical protein Csa_7G398750 [Cucumis sativus]	[more]
KGN44969.1	2.2e-43	58.85	hypothetical protein Csa_7G399280 [Cucumis sativus]	[more]
KGN44966.1	3.2e-42	58.12	hypothetical protein Csa_7G398760 [Cucumis sativus]	[more]
KGN44971.1	2.5e-10	48.95	hypothetical protein Csa_7G404790 [Cucumis sativus]	[more]

BLAST of CsaV3_7G029510.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G029510.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G029510.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5J0\|A0A0A0K5J0_CUCSA	7.5e-88	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1	[more]
tr\|A0A0A0K7W7\|A0A0A0K7W7_CUCSA	1.5e-43	58.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1	[more]
tr\|A0A0A0KAZ8\|A0A0A0KAZ8_CUCSA	2.1e-42	58.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398760 PE=4 SV=1	[more]
tr\|A0A0A0KB06\|A0A0A0KB06_CUCSA	1.7e-10	48.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G404790 PE=4 SV=1	[more]
tr\|A0A0A0K5G8\|A0A0A0K5G8_CUCSA	2.3e-04	41.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G029510	CsaV3_7G029510	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G029510.1.cds1	CsaV3_7G029510.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G029510.1.exon1	CsaV3_7G029510.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G029510.1	CsaV3_7G029510.1-protein	polypeptide