CsaV3_7G018560 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G018560
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 8487803 .. 8488144 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTTAGCAGCCGTAGTAGTATTACACGAATGGGATCTAAATTTCTTGTCTACAAGAAGAAGGAAATTTCTAGGAAGGTGGATCCAGTCATGGATATCCGTCCTTTTTTGAGGACGACAAACTTCATCAAGGGAACGACAAAATGGTGTGGTGGCCTTACGAAATCAAATGAACCAGATTTCGAAATTCGTTGGGAGGAGATGAAGTTCATTTTCAAGCTCATGGAAATTCAGATGGATTCATTCCGTTTGAATGTTCAATCATCATTGAAGGACTTTCTTTTCTGTTTGGAATTACAGCTGAGCAGAGAAGGGAGGAGACACTGGAGAATGGGCAGATGA

mRNA sequence

CATTTTAGCAGCCGTAGTAGTATTACACGAATGGGATCTAAATTTCTTGTCTACAAGAAGAAGGAAATTTCTAGGAAGGTGGATCCAGTCATGGATATCCGTCCTTTTTTGAGGACGACAAACTTCATCAAGGGAACGACAAAATGGTGTGGTGGCCTTACGAAATCAAATGAACCAGATTTCGAAATTCGTTGGGAGGAGATGAAGTTCATTTTCAAGCTCATGGAAATTCAGATGGATTCATTCCGTTTGAATGTTCAATCATCATTGAAGGACTTTCTTTTCTGTTTGGAATTACAGCTGAGCAGAGAAGGGAGGAGACACTGGAGAATGGGCAGATGA

Coding sequence (CDS)

CATTTTAGCAGCCGTAGTAGTATTACACGAATGGGATCTAAATTTCTTGTCTACAAGAAGAAGGAAATTTCTAGGAAGGTGGATCCAGTCATGGATATCCGTCCTTTTTTGAGGACGACAAACTTCATCAAGGGAACGACAAAATGGTGTGGTGGCCTTACGAAATCAAATGAACCAGATTTCGAAATTCGTTGGGAGGAGATGAAGTTCATTTTCAAGCTCATGGAAATTCAGATGGATTCATTCCGTTTGAATGTTCAATCATCATTGAAGGACTTTCTTTTCTGTTTGGAATTACAGCTGAGCAGAGAAGGGAGGAGACACTGGAGAATGGGCAGATGA

Protein sequence

HFSSRSSITRMGSKFLVYKKKEISRKVDPVMDIRPFLRTTNFIKGTTKWCGGLTKSNEPDFEIRWEEMKFIFKLMEIQMDSFRLNVQSSLKDFLFCLELQLSREGRRHWRMGR
Homology
[Close]
BLAST of CsaV3_7G018560 vs. NCBI nr
Match: KGN59101.1 (hypothetical protein Csa_3G769660 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 6.3e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 11  MGSKFLVYKKKEISRKVDPVMDIRPFLRTTNFIKGTTKWCGGLTKSNEPDFEIRWEEMKF 70
           MGSKFLVYKKKEISRKVDPVMDIRPFLRTTNFIKGTTKWCGGLTKSNEPDFEIRWEEMKF
Sbjct: 1   MGSKFLVYKKKEISRKVDPVMDIRPFLRTTNFIKGTTKWCGGLTKSNEPDFEIRWEEMKF 60

Query: 71  IFKLMEIQMDSFRLNVQSSLKDFLFCLELQLSREGRRHWRMGR 114
           IFKLMEIQMDSFRLNVQSSLKDFLFCLELQLSREGRRHWRMGR
Sbjct: 61  IFKLMEIQMDSFRLNVQSSLKDFLFCLELQLSREGRRHWRMGR 103

[Close]
BLAST of CsaV3_7G018560 vs. TrEMBL
Match: tr|A0A0A0LGL2|A0A0A0LGL2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769660 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.1e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 11  MGSKFLVYKKKEISRKVDPVMDIRPFLRTTNFIKGTTKWCGGLTKSNEPDFEIRWEEMKF 70
           MGSKFLVYKKKEISRKVDPVMDIRPFLRTTNFIKGTTKWCGGLTKSNEPDFEIRWEEMKF
Sbjct: 1   MGSKFLVYKKKEISRKVDPVMDIRPFLRTTNFIKGTTKWCGGLTKSNEPDFEIRWEEMKF 60

Query: 71  IFKLMEIQMDSFRLNVQSSLKDFLFCLELQLSREGRRHWRMGR 114
           IFKLMEIQMDSFRLNVQSSLKDFLFCLELQLSREGRRHWRMGR
Sbjct: 61  IFKLMEIQMDSFRLNVQSSLKDFLFCLELQLSREGRRHWRMGR 103

The following BLAST results are available for this feature:
BLAST of CsaV3_7G018560 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59101.16.3e-53100.00hypothetical protein Csa_3G769660 [Cucumis sativus][more]
BLAST of CsaV3_7G018560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G018560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G018560 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LGL2|A0A0A0LGL2_CUCSA4.1e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769660 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G018560.1CsaV3_7G018560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G018560Silver-seed gourdcarcucB0924
CsaV3_7G018560Silver-seed gourdcarcucB0946
CsaV3_7G018560Cucumber (Gy14) v2cgybcucB347
CsaV3_7G018560Cucumber (Gy14) v1cgycucB431
CsaV3_7G018560Cucurbita maxima (Rimu)cmacucB0052
CsaV3_7G018560Cucurbita maxima (Rimu)cmacucB0585
CsaV3_7G018560Cucurbita moschata (Rifu)cmocucB0038
CsaV3_7G018560Cucurbita moschata (Rifu)cmocucB0575
CsaV3_7G018560Cucurbita pepo (Zucchini)cpecucB0733
CsaV3_7G018560Cucurbita pepo (Zucchini)cpecucB0991
CsaV3_7G018560Wild cucumber (PI 183967)cpicucB196
CsaV3_7G018560Bottle gourd (USVL1VR-Ls)cuclsiB539
CsaV3_7G018560Melon (DHL92) v3.5.1cucmeB556
CsaV3_7G018560Melon (DHL92) v3.6.1cucmedB528
CsaV3_7G018560Watermelon (Charleston Gray)cucwcgB549
CsaV3_7G018560Watermelon (97103) v1cucwmB594
CsaV3_7G018560Watermelon (97103) v2cucwmbB595
CsaV3_7G018560Wax gourdcucwgoB734