CsaV3_7G011610 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G011610
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr7 : 6438215 .. 6438571 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACAGAAGAAACTCACACCAAAGCAAGCTCGATGGCAGGACTTTCTTGCCGAGTTTGATTTCCAACTACAATACAAGCCGGGCAAGGCTAATGTAGTTGCTGATGCCTTAAGTCGAAAGGCAGAGCTTGCTGTTGTTCCTACTGCCATGATCTCAGAATCCAACAAAAGAATCAAGGAGATCTTAGCAGAAAGGAAGACAAAAGGGAGAGGAGTCCCCAGCTATAACGAATATTTAATTGCTTGGGAAGGACTACCCGAAAGCGAAGCAAGTTGGGAAAAGGAGGACACCCTATGGCAATTTCAAGATGAAATCAGGAGATTTCAAGAAAGCGCAACGGGGACGTTGCGAAATCGA

mRNA sequence

ACACAGAAGAAACTCACACCAAAGCAAGCTCGATGGCAGGACTTTCTTGCCGAGTTTGATTTCCAACTACAATACAAGCCGGGCAAGGCTAATGTAGTTGCTGATGCCTTAAGTCGAAAGGCAGAGCTTGCTGTTGTTCCTACTGCCATGATCTCAGAATCCAACAAAAGAATCAAGGAGATCTTAGCAGAAAGGAAGACAAAAGGGAGAGGAGTCCCCAGCTATAACGAATATTTAATTGCTTGGGAAGGACTACCCGAAAGCGAAGCAAGTTGGGAAAAGGAGGACACCCTATGGCAATTTCAAGATGAAATCAGGAGATTTCAAGAAAGCGCAACGGGGACGTTGCGAAATCGA

Coding sequence (CDS)

ACACAGAAGAAACTCACACCAAAGCAAGCTCGATGGCAGGACTTTCTTGCCGAGTTTGATTTCCAACTACAATACAAGCCGGGCAAGGCTAATGTAGTTGCTGATGCCTTAAGTCGAAAGGCAGAGCTTGCTGTTGTTCCTACTGCCATGATCTCAGAATCCAACAAAAGAATCAAGGAGATCTTAGCAGAAAGGAAGACAAAAGGGAGAGGAGTCCCCAGCTATAACGAATATTTAATTGCTTGGGAAGGACTACCCGAAAGCGAAGCAAGTTGGGAAAAGGAGGACACCCTATGGCAATTTCAAGATGAAATCAGGAGATTTCAAGAAAGCGCAACGGGGACGTTGCGAAATCGA

Protein sequence

TQKKLTPKQARWQDFLAEFDFQLQYKPGKANVVADALSRKAELAVVPTAMISESNKRIKEILAERKTKGRGVPSYNEYLIAWEGLPESEASWEKEDTLWQFQDEIRRFQESATGTLRNR
Homology
[Close]
BLAST of CsaV3_7G011610 vs. NCBI nr
Match: PKI43755.1 (hypothetical protein CRG98_035861 [Punica granatum])

HSP 1 Score: 116.7 bits (291), Expect = 5.4e-23
Identity = 63/122 (51.64%), Postives = 80/122 (65.57%), Query Frame = 0 

Query: 1   TQKKLTPKQARWQDFLAEFDFQLQYKPGKANVVADALSR--------KAELAVVPTAMIS 60
           TQKKL+PKQARWQDFLAEFDF ++YKPG+ NVVADALSR        +AE +  P    +
Sbjct: 34  TQKKLSPKQARWQDFLAEFDFVMEYKPGRTNVVADALSRREDKGDPSRAESSRAPIGAKA 93

Query: 61  ESNKRIKEILAERKTKGRGVPSYNEYLIAWEGLPESEASWEKEDTLWQFQDEIRRF-QES 114
             ++ +++ILA+R  +        EYLI W+GLPE+EASWE    LWQF  +I  F  E 
Sbjct: 94  AYDQDVEQILADRVVRKHWCKPKREYLIKWKGLPENEASWEPAKDLWQFTKQIEAFYAED 153

[Close]
BLAST of CsaV3_7G011610 vs. NCBI nr
Match: XP_016193075.1 (uncharacterized protein LOC107634007 [Arachis ipaensis] >XP_025640965.1 uncharacterized protein LOC112735652 [Arachis hypogaea])

HSP 1 Score: 109.4 bits (272), Expect = 8.6e-21
Identity = 61/136 (44.85%), Postives = 76/136 (55.88%), Query Frame = 0 

Query: 1   TQKKLTPKQARWQDFLAEFDFQLQYKPGKANVVADALSRKAELAVV-------------- 60
           TQ +L+PKQARWQDFL EFDF+ +YK GK NVVAD LSRKAELA +              
Sbjct: 31  TQNELSPKQARWQDFLTEFDFEFEYKLGKTNVVADVLSRKAELAAIFMVEGDMLHTIKEG 90

Query: 61  -----------------PTAMISESNKRIKEILAERKTKGRGVPSYNEYLIAWEGLPESE 106
                               +I   +K I+EILA R  + RGVP   +Y I W+GL  +E
Sbjct: 91  LHHEDQDELSRGESSRTLPVVIRSFDKEIEEILANRVVRLRGVPPSIQYFIKWKGLSITE 150

[Close]
BLAST of CsaV3_7G011610 vs. NCBI nr
Match: XP_022558247.1 (uncharacterized protein LOC106398893 [Brassica napus])

HSP 1 Score: 106.7 bits (265), Expect = 5.6e-20
Identity = 65/191 (34.03%), Postives = 85/191 (44.50%), Query Frame = 0 

Query: 1    TQKKLTPKQARWQDFLAEFDFQLQYKPGKANVVADALSRKAELAVV-------------- 60
            TQKKL+PK ARWQDFLAEFD+ L+YKPGK NVVADALSRKAELA +              
Sbjct: 831  TQKKLSPKHARWQDFLAEFDYTLEYKPGKVNVVADALSRKAELAAMSQVEGTIMARIREG 890

Query: 61   ------------------------------------------------------------ 109
                                                                        
Sbjct: 891  LERDHVAKELVKLSNEGKVHRFWTIRDSWEGGKGFLPDTLKIHPVFHVSMLKPYHADEDD 950

[Close]
BLAST of CsaV3_7G011610 vs. NCBI nr
Match: XP_008460615.1 (PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 8.3e-16
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 40   KAELAVVPTAMISESNKRIKEILAERKTKGRGVPSYNEYLIAWEGLPESEASWEKEDTLW 99
            +++ +  PT +I E +++IKEILAERK + RGVPS++EYLI WEGLPESEASWE+ED LW
Sbjct: 1354 RSKTSRAPTGVIIEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLPESEASWEREDMLW 1413

Query: 100  QFQDEIRR 108
            QFQ EI +
Sbjct: 1414 QFQAEIEK 1421


HSP 2 Score: 89.7 bits (221), Expect = 7.1e-15
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 0 

Query: 1   TQKKLTPKQARWQDFLAEFDFQLQYKPGKANVVADALSRKAELAVVPTAM-ISESNKRIK 60
           TQKKLTPKQARWQDFLAEFDF+L+YKPG+ANVVADALSRKAEL ++  +M  S   +RIK
Sbjct: 891 TQKKLTPKQARWQDFLAEFDFKLEYKPGRANVVADALSRKAELNIITRSMPTSNFLERIK 950

Query: 61  EILAERKTKGRGVPSYNEYLIAWEGLPESEASWEKEDTL 99
           E +   +       + N   +A EG  ++   WE + TL
Sbjct: 951 EGMQHDEL------AKNLLKLAKEG--KTRRFWENDGTL 981

[Close]
BLAST of CsaV3_7G011610 vs. NCBI nr
Match: XP_008442289.1 (PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 1   TQKKLTPKQARWQDFLAEFDFQLQYKPGKANVVADALSRKAELAVVPTAM-ISESNKRIK 60
           TQKKLTPKQARWQDFLAEFDF+L+YKPG+AN+VADALSRKAEL+ + T+M  S+  +RIK
Sbjct: 869 TQKKLTPKQARWQDFLAEFDFKLEYKPGRANIVADALSRKAELSTITTSMPTSDFLERIK 928

[Close]
BLAST of CsaV3_7G011610 vs. Swiss-Prot
Match: sp|Q9UR07|TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 10  ARWQDFLAEFDFQLQYKPGKANVVADALSR 40
           ARWQ FL +F+F++ Y+PG AN +ADALSR
Sbjct: 802 ARWQLFLQDFNFEINYRPGSANHIADALSR 831

[Close]
BLAST of CsaV3_7G011610 vs. Swiss-Prot
Match: sp|P0CT41|TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 10  ARWQDFLAEFDFQLQYKPGKANVVADALSR 40
           ARWQ FL +F+F++ Y+PG AN +ADALSR
Sbjct: 802 ARWQLFLQDFNFEINYRPGSANHIADALSR 831

[Close]
BLAST of CsaV3_7G011610 vs. Swiss-Prot
Match: sp|P0CT34|TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 10  ARWQDFLAEFDFQLQYKPGKANVVADALSR 40
           ARWQ FL +F+F++ Y+PG AN +ADALSR
Sbjct: 802 ARWQLFLQDFNFEINYRPGSANHIADALSR 831

[Close]
BLAST of CsaV3_7G011610 vs. Swiss-Prot
Match: sp|P0CT35|TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 10  ARWQDFLAEFDFQLQYKPGKANVVADALSR 40
           ARWQ FL +F+F++ Y+PG AN +ADALSR
Sbjct: 802 ARWQLFLQDFNFEINYRPGSANHIADALSR 831

[Close]
BLAST of CsaV3_7G011610 vs. Swiss-Prot
Match: sp|P0CT36|TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 10  ARWQDFLAEFDFQLQYKPGKANVVADALSR 40
           ARWQ FL +F+F++ Y+PG AN +ADALSR
Sbjct: 802 ARWQLFLQDFNFEINYRPGSANHIADALSR 831

[Close]
BLAST of CsaV3_7G011610 vs. TrEMBL
Match: tr|A0A2I0IIE8|A0A2I0IIE8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_035861 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.6e-23
Identity = 63/122 (51.64%), Postives = 80/122 (65.57%), Query Frame = 0 

Query: 1   TQKKLTPKQARWQDFLAEFDFQLQYKPGKANVVADALSR--------KAELAVVPTAMIS 60
           TQKKL+PKQARWQDFLAEFDF ++YKPG+ NVVADALSR        +AE +  P    +
Sbjct: 34  TQKKLSPKQARWQDFLAEFDFVMEYKPGRTNVVADALSRREDKGDPSRAESSRAPIGAKA 93

Query: 61  ESNKRIKEILAERKTKGRGVPSYNEYLIAWEGLPESEASWEKEDTLWQFQDEIRRF-QES 114
             ++ +++ILA+R  +        EYLI W+GLPE+EASWE    LWQF  +I  F  E 
Sbjct: 94  AYDQDVEQILADRVVRKHWCKPKREYLIKWKGLPENEASWEPAKDLWQFTKQIEAFYAED 153

[Close]
BLAST of CsaV3_7G011610 vs. TrEMBL
Match: tr|A0A1S3CE17|A0A1S3CE17_CUCME (uncharacterized protein LOC103499392 OS=Cucumis melo OX=3656 GN=LOC103499392 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.5e-16
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 40   KAELAVVPTAMISESNKRIKEILAERKTKGRGVPSYNEYLIAWEGLPESEASWEKEDTLW 99
            +++ +  PT +I E +++IKEILAERK + RGVPS++EYLI WEGLPESEASWE+ED LW
Sbjct: 1354 RSKTSRAPTGVIIEFDRKIKEILAERKIRRRGVPSHSEYLILWEGLPESEASWEREDMLW 1413

Query: 100  QFQDEIRR 108
            QFQ EI +
Sbjct: 1414 QFQAEIEK 1421


HSP 2 Score: 89.7 bits (221), Expect = 4.7e-15
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 0 

Query: 1   TQKKLTPKQARWQDFLAEFDFQLQYKPGKANVVADALSRKAELAVVPTAM-ISESNKRIK 60
           TQKKLTPKQARWQDFLAEFDF+L+YKPG+ANVVADALSRKAEL ++  +M  S   +RIK
Sbjct: 891 TQKKLTPKQARWQDFLAEFDFKLEYKPGRANVVADALSRKAELNIITRSMPTSNFLERIK 950

Query: 61  EILAERKTKGRGVPSYNEYLIAWEGLPESEASWEKEDTL 99
           E +   +       + N   +A EG  ++   WE + TL
Sbjct: 951 EGMQHDEL------AKNLLKLAKEG--KTRRFWENDGTL 981

[Close]
BLAST of CsaV3_7G011610 vs. TrEMBL
Match: tr|A0A1S3B5C5|A0A1S3B5C5_CUCME (uncharacterized protein LOC103486198 OS=Cucumis melo OX=3656 GN=LOC103486198 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.4e-16
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 1   TQKKLTPKQARWQDFLAEFDFQLQYKPGKANVVADALSRKAELAVVPTAM-ISESNKRIK 60
           TQKKLTPKQARWQDFLAEFDF+L+YKPG+AN+VADALSRKAEL+ + T+M  S+  +RIK
Sbjct: 869 TQKKLTPKQARWQDFLAEFDFKLEYKPGRANIVADALSRKAELSTITTSMPTSDFLERIK 928

[Close]
BLAST of CsaV3_7G011610 vs. TrEMBL
Match: tr|A0A1S3BG92|A0A1S3BG92_CUCME (uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.1e-15
Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 0 

Query: 1    TQKKLTPKQARWQDFLAEFDFQLQYKPGKANVVADALSRKAELAVVPTAM-ISESNKRIK 60
            TQKKLTPKQARWQDFLAEF+F+L+YKPG+ANVVADALSRKAEL ++ T+M  S   +RIK
Sbjct: 1012 TQKKLTPKQARWQDFLAEFNFKLEYKPGRANVVADALSRKAELNIITTSMPTSNFLERIK 1071

Query: 61   EILAERKTKGRGVPSYNEYLIAWEGLPESEASWEKEDTL 99
            E +   +       + N   +A EG  ++   WE   TL
Sbjct: 1072 EGMQHDEL------AKNLLKLAKEG--KTRRFWENNGTL 1102

[Close]
BLAST of CsaV3_7G011610 vs. TrEMBL
Match: tr|A0A2U1P6R5|A0A2U1P6R5_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA187700 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 0 

Query: 1   TQKKLTPKQARWQDFLAEFDFQLQYKPGKANVVADALSRKAELAVVPTAMISESNKRIKE 60
           TQKKL+PKQARWQDFLAEFD+QL+YKPGKANVVADALSRKAE A +  A           
Sbjct: 822 TQKKLSPKQARWQDFLAEFDYQLEYKPGKANVVADALSRKAEFAAITQAQF--------- 881

Query: 61  ILAERKTKGRGVPSYNEYLIAWEGLPESEASWEKEDTLWQFQDEI 106
            L +R  +G     + + ++  E   ++   W K D L+   D +
Sbjct: 882 FLQDRIKEGLEHDPFAKKIVDLEKEGKTRRFWLKGDMLFTKGDRL 917

The following BLAST results are available for this feature:
BLAST of CsaV3_7G011610 vs. NCBI nr
Match NameE-valueIdentityDescription
PKI43755.15.4e-2351.64hypothetical protein CRG98_035861 [Punica granatum][more]
XP_016193075.18.6e-2144.85uncharacterized protein LOC107634007 [Arachis ipaensis] >XP_025640965.1 uncharac... [more]
XP_022558247.15.6e-2034.03uncharacterized protein LOC106398893 [Brassica napus][more]
XP_008460615.18.3e-1663.24PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo][more]
XP_008442289.11.4e-1575.41PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo][more]
BLAST of CsaV3_7G011610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G011610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9UR07|TF211_SCHPO2.9e-0463.33Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
sp|P0CT41|TF212_SCHPO2.9e-0463.33Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
sp|P0CT34|TF21_SCHPO2.9e-0463.33Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
sp|P0CT35|TF22_SCHPO2.9e-0463.33Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
sp|P0CT36|TF23_SCHPO2.9e-0463.33Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of CsaV3_7G011610 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2I0IIE8|A0A2I0IIE8_PUNGR3.6e-2351.64Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_035861 PE=4 SV=1[more]
tr|A0A1S3CE17|A0A1S3CE17_CUCME5.5e-1663.24uncharacterized protein LOC103499392 OS=Cucumis melo OX=3656 GN=LOC103499392 PE=... [more]
tr|A0A1S3B5C5|A0A1S3B5C5_CUCME9.4e-1675.41uncharacterized protein LOC103486198 OS=Cucumis melo OX=3656 GN=LOC103486198 PE=... [more]
tr|A0A1S3BG92|A0A1S3BG92_CUCME6.1e-1554.55uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=... [more]
tr|A0A2U1P6R5|A0A2U1P6R5_ARTAN1.8e-1447.62Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA187700 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromo-like_dom_sf
IPR023780Chromo_domain
IPR000953Chromo/chromo_shadow_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G011610.1CsaV3_7G011610.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 54..113
e-value: 0.0052
score: 26.0
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 56..119
score: 10.947
IPR000953Chromo/chromo shadow domainCDDcd00024CHROMOcoord: 58..110
e-value: 2.74645E-9
score: 48.4143
NoneNo IPR availableGENE3DG3DSA:3.10.20.370coord: 1..26
e-value: 9.1E-12
score: 47.1
NoneNo IPR availableGENE3DG3DSA:3.30.70.270coord: 27..39
e-value: 9.1E-12
score: 47.1
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 57..113
e-value: 1.4E-11
score: 45.9
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 2..73
NoneNo IPR availablePANTHERPTHR24559:SF248TRANSPOSON TY3-G GAG-POL POLYPROTEIN-RELATEDcoord: 2..73
IPR023780Chromo domainPFAMPF00385Chromocoord: 58..110
e-value: 2.3E-11
score: 43.3
IPR016197Chromo-like domain superfamilySUPERFAMILYSSF54160Chromo domain-likecoord: 50..111

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G011610Melon (DHL92) v3.5.1cucmeB544